I am developing FUSE filesystem with python. The problem is that after mounting a filesystem I have no access to stdin/stdout/stderr from my fuse script. I don't see anything, even tracebacks. I am trying to launch pdb like this:
import pdb
pdb.Pdb(None, open('pdb.in', 'r'), open('pdb.out', 'w')).set_trace()
All works fine but very inconvenient. I want to make pdb.in and pdb.out as fifo files but don't know how to connect it correctly. Ideally I want to type commands and see output in one terminal, but will be happy even with two terminals (in one put commands and see output in another). Questions:
1) Is it better/other way to run pdb without stdin/stdout?
2) How can I redirect stdin to pdb.in fifo (All what I type must go to pdb.in)? How can I redirect pdb.out to stdout (I had strange errors with "cat pdb.out" but maybe I don't understand something)
Ok. Exactly what I want, has been done in http://pypi.python.org/pypi/rpdb/0.1.1 .
Before starting the python app
mkfifo pdb.in
mkfifo pdb.out
Then when pdb is called you can interact with it using these two cat commands, one running in the background
cat pdb.out & cat > pdb.in
Note the readline support does not work (i.e. up arrow)
I just ran into a similar issue in a much simpler use-case:
debug a simple Python program running from the command line that had a file piped into sys.stdin, meaning, no way to use the console for pdb.
I ended up solving it by using wdb.
Quick rundown for my use-case. In the shell, install both the wdb server and the wdb client:
pip install wdb.server wdb
Now launch the wdb server with:
wdb.server.py
Now you can navigate to localhost:1984 with your browser and see an interface listing all Python programs running. The wdb project page above has instructions on what you can do if you want to debug any of these running programs.
As for a program under your control, you can you can debug it from the start with:
wdb myscript.py --script=args < and/stdin/redirection
Or, in your code, you can do:
import wdb; wdb.set_trace()
This will pop up an interface in your browser (if local) showing the traced program.
Or you can navigate to the wdb.server.py port to see all ongoing debugging sessions on top of the list of running Python programs, which you can then use to access the specific debugging session you want.
Notice that the commands for navigating the code during the trace are different from the standard pdb ones, for example, to step into a function you use .s instead of s and to step over use .n instead of n. See the wdb README in the link above for details.
Related
I'm using Linux Eclipse (pydev) as IDE to develop python scripts that are launched by an application written in C++. I can debug the python script without problems in the IDE, but the environment is not real (the C++ program sends and receives messages through the stdin/stdout and it's a complex communication channel that I can't fully reproduce writing the messages by hand).
Until now I was using log messages to debug (poor man's debug) but it's getting too complex. When I do something similar in PHP I can just leave xdebug listening and add breakpoints in Netbeans. Very neat and easy. Is it possible to do something like that in Python 3.X (with Eclipse or other IDE)?
NOTE: I know there is a Pydev / Attach to Process functionality, but it doesn't work. Always fails to attach.
NOTE2: There is also a built-in "breakpoint()" in Python 3.7 but it links to a debugger and if also fails, the IDE never gets the control.
After some research, this is the best option I have found. Without any other solution provided, I post it just in case anyone has the same problem.
Python has an integrated debugger: pdb. It works as a module and it doesn't allow to use it if you don't have the window control (i.e. you launch the script).
To solve this there are some coders that have created modules that add a layer on pdb. I have tried some and the most easy and still visual interesting is rpudb (but have a look also to this).
To install it:
pip3 install https://github.com/msbrogli/rpudb/archive/master.zip
(if you install it using the pip3 install rpudb command it will install an old version only valid for python 2)
Then, you use it just adding an import and a function call:
import rpudb
.....
rpudb.set_trace('127.0.0.1', 4444)
.....
Launch the program and it will stop in the set_trace call. To debug it (and continue) open a terminal and launch a telnet like this:
telnet 127.0.0.1 4444
You will have a visual debugger in front of you with the advantage that you can not only debug local programs, but also remote (just change the IP).
I was able to attach PyCharm to a running python process and use break points using PyCharm attach to process
I created a bash script which exec a python script, should work the same with C++
I have python-script, which run bash-scripts via subprocess library. I need to collect stdout and stderr to files, so I have wrapper like:
def execute_chell_script(stage_name, script):
subprocess.check_output('{} &>logs/{}'.format(script, stage_name), shell=True)
And it works correct when I launch my python script on mac. But If I launch it in docker-container (FROM ubuntu:18.04) I cant see any log-files. I can fix it if I use bash -c 'command &>log_file' instead of just command &>log_file inside subprocess.check_output(...). But it looks like too much magic.
I thought about the default shell for user, which launches python-script (its root), but cat /etc/passwd shows root ... /bin/bash.
It would be nice if someone explain me what happened. And maybe I can add some lines to dockerfile to use the same python-script inside and outside docker-container?
As the OP reported in a comment that this fixed their problem, I'm posting it as an answer so they can accept it.
Using check_output when you don't get expect any output is weird; and requiring shell=True here is misdirected. You want
with open(os.path.join('logs', stage_name)) as output:
subprocess.run([script], stdout=ouput, stderr=output)
I have an embedded system on which I run code live. Every time I want to run code, I start two scripts in two different terminals: "run1.sh" and "run2.sh". I can see the output of those scripts in my terminals (I wish to too).
Now I want to make a python script that starts those two scripts in two different terminals. I want to still see their output. Also I want to insert a password from the python script to the terminals, since the scripts run in sudo mode. I've played a lot with supbrocess and the PIPES but I've never achieved all of the above requirements simultaneously. How can these requirements be met?
I'm using Ubuntu btw (so I have gnome terminal)
Update : I was probably not clear in my question, but this has to be inside a python script. It is not for my convenience, it's part of an integration process. The code of the script will be part of a larger python program, so the whole point of the question is how do I do it in python.
Based on your new information added I've created an small python script which will launch two terminals and their output separately:
Main script:
mortiz#florida:~/Documents/projects/python/split_python_execution$ cat split_pythonstuff.py
#!/usr/bin/python3
import subprocess
subprocess.call(['gnome-terminal', '-x', 'python', '/home/mortiz/Documents/projects/python/split_python_execution/script1.py'])
subprocess.call(['gnome-terminal', '-x', 'python', '/home/mortiz/Documents/projects/python/split_python_execution/script2.py'])
Script 1:
mortiz#florida:~/Documents/projects/python/split_python_execution$ cat script1.py
#!/usr/bin/python3
while True :
print ('script 1')
Script 2:
mortiz#florida:~/Documents/projects/python/split_python_execution$ cat script2.py
#!/usr/bin/python3
while True:
print ('script 2')
From here I guess you can develop anything you want.
UPDATE: About sudo
Sudoers is a great way of controlling which things can be executed by specific users providing passwords or not.
If you add this line in /etc/sudoers there's not need for a password when you pass sudo to your command:
<YOUR_USER> ALL = NOPASSWD : /usr/bin/python <SCRIPT.py>
In your question as far as I understand you have the password stored inside the script. There's no need to do that and it's a bad practice. Sudoers would be a better way.
Anyway, if you want to do it in an insecure way then refer to this question and place it before the commands in the scripts provided in this answer.
The linked provided works:
echo -e "mypassword\n" | sudo -S python test.py
15
You only need to implement that on the previous code.
You could install Terminator and configure one profile per terminal to run any script you want.
I have a default template which will load 3 terminals and run 3 different commands / or scripts if you wanted to:
When I load that profile the first one will move me to my projects dir and list them. The next one will run df -h to see the space available and the lower my ip configuration.
This way would save you lots of programming and it's quite easy.
UPDATE: It will run any command, bash, zsh, python, etc.. available for your terminal. If the script is locally in your machine:
python <your_script_1> # first terminal profile
python <your_script_2> # second terminal profile
both would be executed "at the same time".
If your scripts are remote in the target machine, simply create a bash script using ssh to connect to the remote machine with a private key and then running the script, the result is the same in both scenarios.
EDIT: The best thing is setting colors and transparency for each terminal, so you can enjoy the penguin's selfie while you work.
I would like to create a simple Python program that will concurrently execute 2 independent scripts. For now, the two scripts just print a sequence of numbers but my intention is to use this program to concurrently run a few Twitter streaming programs in the future.
I suspect I need to use subprocess.Popen but I cannot quite get my head around what arguments I should put in there. There was a similar question on StackOverflow but the code provided there (pasted below) doesn't print anything. I will appreciate your help.
My files are:
thread1.py
thread2.py
import subprocess
subprocess.Popen(['screen', './thread1.py']))
subprocess.Popen(['screen', './thread2.py'])
Use supervisord
supervisord is process control system just for the purpose of running multiple command line scripts.
It features:
multiple controlled processes
autorestarting failed runs
log stdout and stderr output
starting scripts in order (using priority)
command line utility to view latest log output, stop, start, restart the processes
This solution works only on *nix based systems, it is not available on Windows.
As wanderlust mentioned, why do you want to do it this way and not via linux command line?
Otherwise, the solution you post is doing what it is meant to, i.e, you are doing this at the command line:
screen ./thread1.py
screen ./thread2.py
This will open a screen session and run the program and output within this screen session, such that you will not see the output on your terminal directly. To trouble shoot your output, just execute the scripts without the screen call:
import subprocess
subprocess.Popen(['./thread1.py'])
subprocess.Popen(['./thread2.py'])
Content of thread1.py:
#!/usr/bin/env python
def countToTen():
for i in range(10):
print i
countToTen()
Content of thread2.py:
#!/usr/bin/env python
def countToHundreds():
for i in range(10):
print i*100
countToHundreds()
Then don't forget to do this on the command line:
chmod u+x thread*.py
You can also just open several Command Prompt windows to run several Python programs at once - just run one in each of them:
In each Command Prompt window, go to the correct directory (such as C:/Python27) and then type 'python YourCodeNo1.py' in one Command Prompt window, 'python YourCodeNo2.py' in the next one ect. .
I'm currently running 3 codes at one time in this way, without slowing any of them down.
I'd like to call a separate non-child python program from a python script and have it run externally in a new shell instance. The original python script doesn't need to be aware of the instance it launches, it shouldn't block when the launched process is running and shouldn't care if it dies. This is what I have tried which returns no error but seems to do nothing...
import subprocess
python_path = '/usr/bin/python'
args = [python_path, '&']
p = subprocess.Popen(args, shell=True)
What should I be doing differently
EDIT
The reason for doing this is I have an application with a built in version of python, I have written some python tools that should be run separately alongside this application but there is no assurance that the user will have python installed on their system outside the application with the builtin version I'm using. Because of this I can get the python binary path from the built in version programatically and I'd like to launch an external version of the built in python. This eliminates the need for the user to install python themselves. So in essence I need a simple way to call an external python script using my current running version of python programatically.
I don't need to catch any output into the original program, in fact once launched I'd like it to have nothing to do with the original program
EDIT 2
So it seems that my original question was very unclear so here are more details, I think I was trying to over simplify the question:
I'm running OSX but the code should also work on windows machines.
The main application that has a built in version of CPython is a compiled c++ application that ships with a python framework that it uses at runtime. You can launch the embedded version of this version of python by doing this in a Terminal window on OSX
/my_main_app/Contents/Frameworks/Python.framework/Versions/2.7/bin/python
From my main application I'd like to be able to run a command in the version of python embedded in the main app that launches an external copy of a python script using the above python version just like I would if I did the following command in a Terminal window. The new launched orphan process should have its own Terminal window so the user can interact with it.
/my_main_app/Contents/Frameworks/Python.framework/Versions/2.7/bin/python my_python_script
I would like the child python instance not to block the main application and I'd like it to have its own terminal window so the user can interact with it. The main application doesn't need to be aware of the child once its launched in any way. The only reason I would do this is to automate launching an external application using a Terminal for the user
If you're trying to launch a new terminal window to run a new Python in (which isn't what your question asks for, but from a comment it sounds like it's what you actually want):
You can't. At least not in a general-purpose, cross-platform way.
Python is just a command-line program that runs with whatever stdin/stdout/stderr it's given. If those happen to be from a terminal, then it's running in a terminal. It doesn't know anything about the terminal beyond that.
If you need to do this for some specific platform and some specific terminal program—e.g., Terminal.app on OS X, iTerm on OS X, the "DOS prompt" on Windows, gnome-terminal on any X11 system, etc.—that's generally doable, but the way to do it is by launching or scripting the terminal program and telling it to open a new window and run Python in that window. And, needless to say, they all have completely different ways of doing that.
And even then, it's not going to be possible in all cases. For example, if you ssh in to a remote machine and run Python on that machine, there is no way it can reach back to your machine and open a new terminal window.
On most platforms that have multiple possible terminals, you can write some heuristic code that figures out which terminal you're currently running under by just walking os.getppid() until you find something that looks like a terminal you know how to deal with (and if you get to init/launchd/etc. without finding one, then you weren't running in a terminal).
The problem is that you're running Python with the argument &. Python has no idea what to do with that. It's like typing this at the shell:
/usr/bin/python '&'
In fact, if you pay attention, you're almost certainly getting something like this through your stderr:
python: can't open file '&': [Errno 2] No such file or directory
… which is exactly what you'd get from doing the equivalent at the shell.
What you presumably wanted was the equivalent of this shell command:
/usr/bin/python &
But the & there isn't an argument at all, it's part of sh syntax. The subprocess module doesn't know anything about sh syntax, and you're telling it not to use a shell, so there's nobody to interpret that &.
You could tell subprocess to use a shell, so it can do this for you:
cmdline = '{} &'.format(python_path)
p = subprocess.Popen(cmdline, shell=True)
But really, there's no good reason to. Just opening a subprocess and not calling communicate or wait on it already effectively "puts it in the background", just like & does on the shell. So:
args = [python_path]
p = subprocess.Popen(args)
This will start a new Python interpreter that sits there running in the background, trying to use the same stdin/stdout/stderr as your parent. I'm not sure why you want that, but it's the same thing that using & in the shell would have done.
Actually I think there might be a solution to your problem, I found a useful solution at another question here.
This way subprocess.popen starts a new python shell instance and runs the second script from there. It worked perfectly for me on Windows 10.
You can try using screen command
with this command a new shell instance created and the current instance runs in the background.
# screen; python script1.py
After running above command, a new shell prompt will be seen where we can run another script and script1.py will be running in the background.
Hope it helps.