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What are the best libaries for creating interactive (zoom, pan, create online annotations) charts in python?
I've checked Pretty graphs and charts in Python
but this does not address zoom, pan, and annotation capabilities.
I'm not sure what you mean by "annotation" in this context, but matplotlib graphs are well-suited for interactive work, and include very good zooming and panning capabilities built-in.
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I have been playing around with simple cellular automata in Python on a square grid, using matplotlib.
Which Python based tools would be most useful in helping me work with cellular automata on hexagonal grids?
You need to represent the grid as a hextile. Please look at this post which discusses how to represent a hexagonal grid in memory: How do I represent a hextile/hex grid in memory?
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Is there anything like wcopyfind for python?
http://plagiarism.bloomfieldmedia.com/z-wordpress/software/wcopyfind/
The inbuilt difflib might help
http://docs.python.org/2/library/difflib.html
But people seem to think this is tough
Can difflib be used to make a plagiarism detection program?
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I want to modify image files (bmp, jpg, and png) by adding text on top of it in a specific area. For example if I were to draw an picture for an envelope and print different addresses on top in a designated area with specified fonts and colors which library would I use?
I am looking for something like this http://python-catalin.blogspot.com/2010/06/add-text-on-image-with-pil-module.html
But with a BSD license that can work with numpy and scipy with Python 3 since I just switched.
Is this a job for Scikit-image or Pillow (Not sure if it is BSD)? if not what can I use and which part of the library?
This can be achieved using freetype-py. See the example here: https://code.google.com/p/freetype-py/source/browse/trunk/examples/hello-world.py
This would also be a good fit for the skimage.draw module, and we can certainly consider adding it.
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Can we use ProDy to model the structure of proteins? Is there any other way we can model the structure of a protein using Python?
Thank you
Yes, ProDy may do the job.
If you like using "only" Python, then check aslo PyMOL (http://www.pymol.org/)
for visualizing proteins and molecular structures.
If you like to run simulations, then GROMACS package for molecular dynamics simulations will be my choice, but it is written (mainly) in C.
http://www.gromacs.org/
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I need to make a very simple image that will illustrate a cash flow diagram based on user input. Basically, I just need to make an axis and some arrows facing up and down and proportional to the value of the cash flow. I would like to know how to do this with matplot.
The best tool can be matplotlib. You can simply store the values in a list and then use 'stem' to draw the lines. Then you can use markers with triangle_up and triangle_down to show the arrow.
If you simply need arrows pointing up and down, use Unicode arrows like "↑" and "↓". This would be really simple if rendering in a browser.