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Closed 9 years ago.
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Can we use ProDy to model the structure of proteins? Is there any other way we can model the structure of a protein using Python?
Thank you
Yes, ProDy may do the job.
If you like using "only" Python, then check aslo PyMOL (http://www.pymol.org/)
for visualizing proteins and molecular structures.
If you like to run simulations, then GROMACS package for molecular dynamics simulations will be my choice, but it is written (mainly) in C.
http://www.gromacs.org/
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Closed 8 years ago.
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I have been playing around with simple cellular automata in Python on a square grid, using matplotlib.
Which Python based tools would be most useful in helping me work with cellular automata on hexagonal grids?
You need to represent the grid as a hextile. Please look at this post which discusses how to represent a hexagonal grid in memory: How do I represent a hextile/hex grid in memory?
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Is there anything like wcopyfind for python?
http://plagiarism.bloomfieldmedia.com/z-wordpress/software/wcopyfind/
The inbuilt difflib might help
http://docs.python.org/2/library/difflib.html
But people seem to think this is tough
Can difflib be used to make a plagiarism detection program?
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I've seen the cheatsheet floating around the web, but I'm after something that shows assigning variables; creating literals, tuple, lists, dictionaries, sets; accessing lists, disctionaries; list of operators; list of datatype functions etc..
..so something that I memorize and remember easily.
Thanks!
You can use the Python Quick Reference (PQR), latest versions available from http://rgruet.free.fr/. It is updated for each new version by different people.
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Is there a library similar to Python's difflib on Ruby?
Particularly, I need one that has a method similar to difflib.get_close_matches. Any recommendations?
After some research, I suggest using amatch or SimMetrics (with JRuby) and manually implement the get_close_matches method. Both libs offer implementations of many string similarity algorithms.
You can take a look at diff-lcs.
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I know that NLTK has this. But...is that only for NLP?
Is there a library that specializes in classification?
http://code.google.com/p/pybayes/
Reverend may be another nice option: http://divmod.org/trac/wiki/DivmodReverend