converting an HTML table in Pandas Dataframe - python

I am reading an HTML table with pd.read_html but the result is coming in a list, I want to convert it inot a pandas dataframe, so I can continue further operations on the same. I am using the following script
import pandas as pd
import html5lib
data=pd.read_html('http://www.espn.com/nhl/statistics/player/_/stat/points/sort/points/year/2015/seasontype/2',skiprows=1)
and since My results are coming as 1 list, I tried to convert it into a data frame with
data1=pd.DataFrame(Data)
and result came as
0
0 0 1 2 3 4...
and because of result as a list, I can't apply any functions such as rename, dropna, drop.
I will appreciate every help


I think you need add [0] if need select first item of list, because read_html return list of DataFrames:
So you can use:
import pandas as pd
data1 = pd.read_html('http://www.espn.com/nhl/statis‌​tics/player/‌​_/stat/point‌​s/sort/point‌​s/year/2015&‌​#47;seasontype/2‌​',skiprows=1)[0]
print (data1)
0 1 2 3 4 5 6 7 8 9 \
0 RK PLAYER TEAM GP G A PTS +/- PIM PTS/G
1 1 Jamie Benn, LW DAL 82 35 52 87 1 64 1.06
2 2 John Tavares, C NYI 82 38 48 86 5 46 1.05
3 3 Sidney Crosby, C PIT 77 28 56 84 5 47 1.09
4 4 Alex Ovechkin, LW WSH 81 53 28 81 10 58 1.00
5 NaN Jakub Voracek, RW PHI 82 22 59 81 1 78 0.99
6 6 Nicklas Backstrom, C WSH 82 18 60 78 5 40 0.95
7 7 Tyler Seguin, C DAL 71 37 40 77 -1 20 1.08
8 8 Jiri Hudler, LW CGY 78 31 45 76 17 14 0.97
9 NaN Daniel Sedin, LW VAN 82 20 56 76 5 18 0.93
10 10 Vladimir Tarasenko, RW STL 77 37 36 73 27 31 0.95
11 NaN PP SH NaN NaN NaN NaN NaN NaN NaN
12 RK PLAYER TEAM GP G A PTS +/- PIM PTS/G
13 NaN Nick Foligno, LW CBJ 79 31 42 73 16 50 0.92
14 NaN Claude Giroux, C PHI 81 25 48 73 -3 36 0.90
15 NaN Henrik Sedin, C VAN 82 18 55 73 11 22 0.89
16 14 Steven Stamkos, C TB 82 43 29 72 2 49 0.88
17 NaN Tyler Johnson, C TB 77 29 43 72 33 24 0.94
18 16 Ryan Johansen, C CBJ 82 26 45 71 -6 40 0.87
19 17 Joe Pavelski, C SJ 82 37 33 70 12 29 0.85
20 NaN Evgeni Malkin, C PIT 69 28 42 70 -2 60 1.01
21 NaN Ryan Getzlaf, C ANA 77 25 45 70 15 62 0.91
22 20 Rick Nash, LW NYR 79 42 27 69 29 36 0.87
23 NaN PP SH NaN NaN NaN NaN NaN NaN NaN
24 RK PLAYER TEAM GP G A PTS +/- PIM PTS/G
25 21 Max Pacioretty, LW MTL 80 37 30 67 38 32 0.84
26 NaN Logan Couture, C SJ 82 27 40 67 -6 12 0.82
27 23 Jonathan Toews, C CHI 81 28 38 66 30 36 0.81
28 NaN Erik Karlsson, D OTT 82 21 45 66 7 42 0.80
29 NaN Henrik Zetterberg, LW DET 77 17 49 66 -6 32 0.86
30 26 Pavel Datsyuk, C DET 63 26 39 65 12 8 1.03
31 NaN Joe Thornton, C SJ 78 16 49 65 -4 30 0.83
32 28 Nikita Kucherov, RW TB 82 28 36 64 38 37 0.78
33 NaN Patrick Kane, RW CHI 61 27 37 64 10 10 1.05
34 NaN Mark Stone, RW OTT 80 26 38 64 21 14 0.80
35 NaN PP SH NaN NaN NaN NaN NaN NaN NaN
36 RK PLAYER TEAM GP G A PTS +/- PIM PTS/G
37 NaN Alexander Steen, LW STL 74 24 40 64 8 33 0.86
38 NaN Kyle Turris, C OTT 82 24 40 64 5 36 0.78
39 NaN Johnny Gaudreau, LW CGY 80 24 40 64 11 14 0.80
40 NaN Anze Kopitar, C LA 79 16 48 64 -2 10 0.81
41 35 Radim Vrbata, RW VAN 79 31 32 63 6 20 0.80
42 NaN Jaden Schwartz, LW STL 75 28 35 63 13 16 0.84
43 NaN Filip Forsberg, C NSH 82 26 37 63 15 24 0.77
44 NaN Jordan Eberle, RW EDM 81 24 39 63 -16 24 0.78
45 NaN Ondrej Palat, LW TB 75 16 47 63 31 24 0.84
46 40 Zach Parise, LW MIN 74 33 29 62 21 41 0.84
10 11 12 13 14 15 16
0 SOG PCT GWG G A G A
1 253 13.8 6 10 13 2 3
2 278 13.7 8 13 18 0 1
3 237 11.8 3 10 21 0 0
4 395 13.4 11 25 9 0 0
5 221 10.0 3 11 22 0 0
6 153 11.8 3 3 30 0 0
7 280 13.2 5 13 16 0 0
8 158 19.6 5 6 10 0 0
9 226 8.9 5 4 21 0 0
10 264 14.0 6 8 10 0 0
11 NaN NaN NaN NaN NaN NaN NaN
12 SOG PCT GWG G A G A
13 182 17.0 3 11 15 0 0
14 279 9.0 4 14 23 0 0
15 101 17.8 0 5 20 0 0
16 268 16.0 6 13 12 0 0
17 203 14.3 6 8 9 0 0
18 202 12.9 0 7 19 2 0
19 261 14.2 5 19 12 0 0
20 212 13.2 4 9 17 0 0
21 191 13.1 6 3 10 0 2
22 304 13.8 8 6 6 4 1
23 NaN NaN NaN NaN NaN NaN NaN
24 SOG PCT GWG G A G A
25 302 12.3 10 7 4 3 2
26 263 10.3 4 6 18 2 0
27 192 14.6 7 6 11 2 1
28 292 7.2 3 6 24 0 0
29 227 7.5 3 4 24 0 0
30 165 15.8 5 8 16 0 0
31 131 12.2 0 4 18 0 0
32 190 14.7 2 2 13 0 0
33 186 14.5 5 6 16 0 0
34 157 16.6 6 5 8 1 0
35 NaN NaN NaN NaN NaN NaN NaN
36 SOG PCT GWG G A G A
37 223 10.8 5 8 16 0 0
38 215 11.2 6 4 12 1 0
39 167 14.4 4 8 13 0 0
40 134 11.9 4 6 18 0 0
41 267 11.6 7 12 11 0 0
42 184 15.2 4 8 8 0 2
43 237 11.0 6 6 13 0 0
44 183 13.1 2 6 15 0 0
45 139 11.5 5 3 8 1 1
46 259 12.7 3 11 5 0 0


If your dataframe ends up with columns indexed as 0,1,2 etc and the headings in the first row, (as above) just specify that the column names are in the first row with header=0
Without this, pandas may see a mix of data types - text in row 1 and numbers in the rest and cast the column as object rather than, say, int64.
Full line would be:
data1 = pd.read_html(url, skiprows=1, header=0)[0]
[0] is the first table in the list of possible tables.
There are options for handling NA values as well. Check out the documentation here:
https://pandas.pydata.org/docs/reference/api/pandas.read_html.html


I know this is late, but here's a better way...
I noticed that the DataFrames in the list are all part of the same table/dataset you are trying to analyze, so instead of breaking them up and then merging them together, a better solution is to contact the list of DataFrames.
Check out the results of this code:
df = pd.concat(pd.read_html('https://www.espn.com/nhl/stats/player/_/view/goaltending'),axis=1)
output:
df.head(1)
index RK Name POS GP W L OTL GA/G SA GA SV SV% SO TOI PIM SOSA SOS SOS%
0 1 Igor ShesterkinNYR G 53 36 13 4 2.07 1622 106 1516 0.935 6 3070:32 2 28 20 0.714

Related

Calculate a weighted average on a dataframe without using a loop in python

Let's say I have the following dataframe:
Individual stop x y z time
0 23 1 20 27 4 21
1 23 2 23 24 13 63
2 1756 2 5 41 73 12
3 1756 3 7 42 72 6
4 1756 4 4.5 39 72 45
5 1756 4 3 50 73 98
6 2153 2 121 12 6 33
7 2153 3 122.5 2 6 0
8 3276 1 54 33 -12 0
9 5609 1 -2 44 -32 56
10 5609 2 8 44 -32 23
11 5609 5 102 -23 16 76
I would like to calculate the average of the position x, y, z weighted by the time for each Individual. I would like to then put the results in a new dataframe like this:
Individual bar_x bar_y bar_z
0 23 22.5 24.75 10.75
2 1756 3.72 45.96 72.68
6 2153 121 12 6
9 5609 50.48 11.15 24.16
I have done this with a loop going through every Individual and calculate the weighted average. It works well, but the running time is VERY long when the dataframe gets bigger. I am pretty sure there is a much faster solution using pandas but I haven't find the way yet, any idea please?
Thanks in advance!

Is this what you are looking for?
(df[['x','y','z']].mul(df.groupby('Individual')['time']
.transform(lambda x: x.div(x.sum())).fillna(0),axis=0)
.groupby(df['Individual'])
.sum()
.round(2))
Output:
x y z
Individual
23 22.25 24.75 10.75
1756 3.72 45.96 72.68
2153 121.00 12.00 6.00
3276 0.00 0.00 0.00
5609 50.48 11.15 -8.46

Sum up previous rows upto 3 and multiply with value from another column using pandas

I have 2 dataframes, i want to get sum value of every row based on groupby of unique id each previous 3rows & each row value should be multiply by other dataframe value
for example : dataframe A dataframe B
unique_id value out_value num_values
1 1 45 0.15
2 1 33 0.30
3 1 18 0.18
#4 1 26 20.7
5 2 66
6 2 44
7 2 22
#8 2 19. 28.3
expected output_value column
4th row = 18 * 0.15 + 33*0.30 + 45*0.18 = 2.7+9.9+8.1 = 20.7
8th row = 22 * 0.15 + 44*0.30 + 66*0.18 = 3.3+ 13.2 + 11.88= 28.3
based on Unique_id each value should calculate based previous 3values.
for every row there will be previous 3 rows available

import pandas as pd
import numpy as np
df_a = pd.DataFrame({
'uni_id':[1, 1, 1, 1, 2, 2, 2, 2, 152, 152, 152, 152, 152],
'value':[45,33,18,26,66,44,22,19,36,27,45,81,90]
}, index=range(1,14))
df_b = pd.DataFrame({
'num_values':[0.15,0.30,0.18]
})
df_a
###
uni_id value
1 1 45
2 1 33
3 1 18
4 1 26
5 2 66
6 2 44
7 2 22
8 2 19
9 152 36
10 152 27
11 152 45
12 152 81
13 152 90
df_b
###
num_values
0 0.15
1 0.30
2 0.18
# main calculation
arr = [df_a['value'].shift(x+1).values[::-1][:3] for x in range(len(df_a['value']))[::-1]]
arr_b = pd.Series(np.inner(arr, df_b['num_values']))
# filter and clean
mask = df_a.groupby('uni_id').cumcount()+1 > 3
output = arr_b * mask
output[output == 0] = np.nan
# concat result to df_a
df_a['out_value'] = output
df_a
###
uni_id value out_value
1 1 45 NaN
2 1 33 NaN
3 1 18 NaN
4 1 26 20.70
5 2 66 NaN
6 2 44 NaN
7 2 22 NaN
8 2 19 28.38
9 152 36 NaN
10 152 27 NaN
11 152 45 NaN
12 152 81 21.33
13 152 90 30.51
If you want to keep non-null values through filtrate:
df_a.query('out_value.notnull()')
###
uni_id value out_value
4 1 26 20.70
8 2 19 28.38
12 152 81 21.33
13 152 90 30.51
Group with metrics uni_id,Year_Month
Data preparation:
# create date range series with 7 days
import pandas as pd
import numpy as np
rng = np.random.default_rng(42)
rng.integers(10,100, 26)
date_range = pd.Series(pd.date_range(start='01.30.2020', periods=27, freq='5D')).dt.to_period('M')
df_a = pd.DataFrame({
'uni_id':[1, 1, 1, 1,1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 152, 152, 152, 152, 152,152, 152, 152, 152, 152],
'Year_Month':date_range,
'value':rng.integers(10,100, 26)
}, index=range(1,27))
df_b = pd.DataFrame({
'num_values':[0.15,0.30,0.18]
})
df_a
###
uni_id Year_Month value
1 1 2020-02 46
2 1 2020-02 84
3 1 2020-02 59
4 1 2020-02 49
5 1 2020-02 50
6 1 2020-02 30
7 1 2020-03 18
8 1 2020-03 59
9 2 2020-03 89
10 2 2020-03 15
11 2 2020-03 87
12 2 2020-03 84
13 2 2020-04 34
14 2 2020-04 66
15 2 2020-04 24
16 2 2020-04 78
17 152 2020-04 73
18 152 2020-04 41
19 152 2020-05 16
20 152 2020-05 97
21 152 2020-05 50
22 152 2020-05 90
23 152 2020-05 71
24 152 2020-05 80
25 152 2020-06 78
26 152 2020-06 27
Processing
arr = [df_a['value'].shift(x+1).values[::-1][:3] for x in range(len(df_a['value']))[::-1]]
arr_b = pd.Series(np.inner(arr, df_b['num_values']))
# filter and clean
mask = df_a.groupby(['uni_id','Year_Month']).cumcount()+1 > 3
output = arr_b * mask
output[output == 0] = np.nan
# concat result to df_a
df_a['out_value'] = output
df_a
###
uni_id Year_Month value out_value
1 1 2020-02 46 NaN
2 1 2020-02 84 NaN
3 1 2020-02 59 NaN
4 1 2020-02 49 40.17
5 1 2020-02 50 32.82
6 1 2020-02 30 28.32
7 1 2020-03 18 NaN
8 1 2020-03 59 NaN
9 2 2020-03 89 NaN
10 2 2020-03 15 NaN
11 2 2020-03 87 NaN
12 2 2020-03 84 41.4
13 2 2020-04 34 NaN
14 2 2020-04 66 NaN
15 2 2020-04 24 NaN
16 2 2020-04 78 30.78
17 152 2020-04 73 NaN
18 152 2020-04 41 NaN
19 152 2020-05 16 NaN
20 152 2020-05 97 NaN
21 152 2020-05 50 NaN
22 152 2020-05 90 45.96
23 152 2020-05 71 46.65
24 152 2020-05 80 49.5
25 152 2020-06 78 NaN
26 152 2020-06 27 NaN

how to split an integer value from one column to two columns in text file using pandas or numpy (python)

I have a text file which has a number of integer values like this.
20180701 20180707 52 11 1 2 4 1 0 0 10 7 1 3 1 0 4 5 2
20180708 20180714 266 8 19 3 2 9 7 25 20 17 12 9 9 27 34 54 11
20180715 20180721 654 52 34 31 20 16 12 25 84 31 38 37 38 69 66 87 14
20180722 201807281017 110 72 46 52 29 29 22 204 41 46 51 57 67 82 92 17
20180729 201808041106 276 37 11 87 20 10 8 284 54 54 72 38 49 41 53 12
20180805 20180811 624 78 19 15 55 16 8 9 172 15 31 35 38 47 29 36 21
20180812 20180818 488 63 17 7 26 10 9 7 116 17 14 39 31 34 27 64 7
20180819 20180825 91 4 7 0 4 5 1 3 16 3 4 5 10 10 7 11 1
20180826 20180901 49 2 2 1 0 4 0 1 2 0 1 4 8 2 6 6 10
I have to make a file by merging several files like this but you guys can see a problem with this data.
In 4 and 5 lines, the first values, 1017 and 1106, right next to period index make a problem.
When I try to read these two lines, I always have had this result.
It came out that first values in first column next to index columns couldn't recognized as first values themselves.
In [14]: fw.iloc[80,:]
Out[14]:
3 72.0
4 46.0
5 52.0
6 29.0
7 29.0
8 22.0
9 204.0
10 41.0
11 46.0
12 51.0
13 57.0
14 67.0
15 82.0
16 92.0
17 17.0
18 NaN
Name: (20180722, 201807281017), dtype: float64
I tried to make it correct with indexing but failed.
The desirable result is,
In [14]: fw.iloc[80,:]
Out[14]:
2 1017.0
3 110.0
4 72.0
5 46.0
6 52.0
7 29.0
8 29.0
9 22.0
10 204.0
11 41.0
12 46.0
13 51.0
14 57.0
15 67.0
16 82.0
17 92.0
18 17.0
Name: (20180722, 201807281017), dtype: float64
How can I solve this problem?
+
I used this code to read this file.
fw = pd.read_csv('warm_patient.txt', index_col=[0,1], header=None, delim_whitespace=True)

A better fit for this would be pandas.read_fwf. For your example:
df = pd.read_fwf(filename, index_col=[0,1], header=None, widths=2*[10]+17*[4])
I don't know if the column widths can be inferred for all your data or need to be hardcoded.

One possibility would be to manually construct the dataframe, this way we can parse the text by splitting the values every 4 characters.
from textwrap import wrap
import pandas as pd
def read_file(f_name):
data = []
with open(f_name) as f:
for line in f.readlines():
idx1 = line[0:8]
idx2 = line[10:18]
points = map(lambda x: int(x.replace(" ", "")), wrap(line.rstrip()[18:], 4))
data.append([idx1, idx2, *points])
return pd.DataFrame(data).set_index([0, 1])

It could be made somewhat more efficient (in particular if this is a particularly long text file), but here's one solution.
fw = pd.read_csv('test.txt', header=None, delim_whitespace=True)
for i in fw[pd.isna(fw.iloc[:,-1])].index:
num_str = str(fw.iat[i,1])
a,b = map(int,[num_str[:-4],num_str[-4:]])
fw.iloc[i,3:] = fw.iloc[i,2:-1]
fw.iloc[i,:3] = [fw.iat[i,0],a,b]
fw = fw.set_index([0,1])
The result of print(fw) from there is
2 3 4 5 6 7 8 9 10 11 12 13 14 15 \
0 1
20180701 20180707 52 11 1 2 4 1 0 0 10 7 1 3 1 0
20180708 20180714 266 8 19 3 2 9 7 25 20 17 12 9 9 27
20180715 20180721 654 52 34 31 20 16 12 25 84 31 38 37 38 69
20180722 20180728 1017 110 72 46 52 29 29 22 204 41 46 51 57 67
20180729 20180804 1106 276 37 11 87 20 10 8 284 54 54 72 38 49
20180805 20180811 624 78 19 15 55 16 8 9 172 15 31 35 38 47
20180812 20180818 488 63 17 7 26 10 9 7 116 17 14 39 31 34
20180819 20180825 91 4 7 0 4 5 1 3 16 3 4 5 10 10
20180826 20180901 49 2 2 1 0 4 0 1 2 0 1 4 8 2
16 17 18
0 1
20180701 20180707 4 5 2.0
20180708 20180714 34 54 11.0
20180715 20180721 66 87 14.0
20180722 20180728 82 92 17.0
20180729 20180804 41 53 12.0
20180805 20180811 29 36 21.0
20180812 20180818 27 64 7.0
20180819 20180825 7 11 1.0
20180826 20180901 6 6 10.0
Here's the result of the print after applying your initial solution of fw = pd.read_csv('test.txt', index_col=[0,1], header=None, delim_whitespace=True) for comparison.
2 3 4 5 6 7 8 9 10 11 12 13 14 \
0 1
20180701 20180707 52 11 1 2 4 1 0 0 10 7 1 3 1
20180708 20180714 266 8 19 3 2 9 7 25 20 17 12 9 9
20180715 20180721 654 52 34 31 20 16 12 25 84 31 38 37 38
20180722 201807281017 110 72 46 52 29 29 22 204 41 46 51 57 67
20180729 201808041106 276 37 11 87 20 10 8 284 54 54 72 38 49
20180805 20180811 624 78 19 15 55 16 8 9 172 15 31 35 38
20180812 20180818 488 63 17 7 26 10 9 7 116 17 14 39 31
20180819 20180825 91 4 7 0 4 5 1 3 16 3 4 5 10
20180826 20180901 49 2 2 1 0 4 0 1 2 0 1 4 8
15 16 17 18
0 1
20180701 20180707 0 4 5 2.0
20180708 20180714 27 34 54 11.0
20180715 20180721 69 66 87 14.0
20180722 201807281017 82 92 17 NaN
20180729 201808041106 41 53 12 NaN
20180805 20180811 47 29 36 21.0
20180812 20180818 34 27 64 7.0
20180819 20180825 10 7 11 1.0
20180826 20180901 2 6 6 10.0

pandas dataframe in def

I tried the below code to pass a df to a def function.
the first line works fine with df.dropna.
however the df.replace has issue as I found that it does not do the replace as I expected.
def Max(df):
df.dropna(subset=df.columns[3:10], inplace=True)
print(df)
df.replace(to_replace=65535, value=-10, inplace=True)
print(df)
return df
anyone know the issue and how to solve it?

Your code works well. Maybe try this version without inplace modifications:
>>> df
A B C D E F G H I J
0 1 2 3 4 5.0 6 7 8 9 10.0
1 11 65535 13 14 15.0 16 17 18 19 20.0
2 21 22 23 24 25.0 26 27 28 29 NaN
3 65535 32 33 34 NaN 36 37 38 39 40.0
4 41 42 65535 44 45.0 46 47 48 49 50.0
5 51 52 53 54 55.0 56 57 58 59 60.0
def Max(df):
return df.dropna(subset=df.columns[3:10]).replace(65535, -10)
>>> Max(df)
A B C D E F G H I J
0 1 2 3 4 5.0 6 7 8 9 10.0
1 11 -10 13 14 15.0 16 17 18 19 20.0
4 41 42 -10 44 45.0 46 47 48 49 50.0
5 51 52 53 54 55.0 56 57 58 59 60.0

Pandas compare 2 dataframes by specific rows in all columns

I have the following Pandas dataframe of some raw numbers:
import numpy as np
import pandas as pd
pd.set_option('display.max_rows', 500)
pd.set_option('display.max_columns', 500)
pd.set_option('display.width', 10000)
col_raw_headers = ['07_08_19 #1','07_08_19 #2','07_08_19 #2.1','11_31_19 #1','11_31_19 #1.1','11_31_19 #1.3','12_15_20 #1','12_15_20 #2','12_15_20 #2.1','12_15_20 #2.2']
col_raw_trial_info = ['Quantity1','Quantity2','Quantity3','Quantity4','Quantity5','Quantity6','TimeStamp',np.nan,np.nan,np.nan,np.nan,np.nan,np.nan,np.nan,np.nan,np.nan]
cols_raw = [[1,75,9,7,-4,0.4,'07/08/2019 05:11'],[1,11,20,-17,12,0.8,'07/08/2019 10:54'],[2,0.9,17,102,56,0.6,'07/08/2019 21:04'],[1,70,4,75,0.8,0.4,'11/31/2019 11:15'],[2,60,74,41,-36,0.3,'11/31/2019 16:50'],[3,17,12,-89,30,0.1,'11/31/2019 21:33'],[1,6,34,496,-84,0.5,'12/15/2020 01:36'],[1,3,43,12,-23,0.5,'12/15/2020 07:01'],[2,5,92,17,64,0.5,'12/15/2020 11:15'],[3,7,11,62,-11,0.5,'12/15/2020 21:45']]
both_values = [[1,2,3,4,8,4,3,8,7],[6,5,3,7,3,23,27,3,11],[65,3,6,78,9,2,45,6,7],[4,3,6,8,3,5,66,32,84],[2,3,11,55,3,7,33,65,34],[22,1,6,32,5,6,4,3,898],[1,6,3,2,6,55,22,6,23],[34,37,46,918,0,37,91,12,68],[51,20,1,34,12,59,78,6,101],[12,71,34,94,1,73,46,51,21]]
processed_cols = ['c_1trial','14_1','14_2','8_1','8_2','8_3','28_1','24_1','24_2','24_3']
df_raw = pd.DataFrame(zip(*cols_raw))
df_temp = pd.DataFrame(zip(*both_values))
df_raw = pd.concat([df_raw,df_temp])
df_raw.columns=col_raw_headers
df_raw.insert(0,'Tr_id',col_raw_trial_info)
df_raw.reset_index(drop=True,inplace=True)
It looks like this:
Tr_id 07_08_19 #1 07_08_19 #2 07_08_19 #2.1 11_31_19 #1 11_31_19 #1.1 11_31_19 #1.3 12_15_20 #1 12_15_20 #2 12_15_20 #2.1 12_15_20 #2.2
0 Quantity1 1 1 2 1 2 3 1 1 2 3
1 Quantity2 75 11 0.9 70 60 17 6 3 5 7
2 Quantity3 9 20 17 4 74 12 34 43 92 11
3 Quantity4 7 -17 102 75 41 -89 496 12 17 62
4 Quantity5 -4 12 56 0.8 -36 30 -84 -23 64 -11
5 Quantity6 0.4 0.8 0.6 0.4 0.3 0.1 0.5 0.5 0.5 0.5
6 TimeStamp 07/08/2019 05:11 07/08/2019 10:54 07/08/2019 21:04 11/31/2019 11:15 11/31/2019 16:50 11/31/2019 21:33 12/15/2020 01:36 12/15/2020 07:01 12/15/2020 11:15 12/15/2020 21:45
7 NaN 1 6 65 4 2 22 1 34 51 12
8 NaN 2 5 3 3 3 1 6 37 20 71
9 NaN 3 3 6 6 11 6 3 46 1 34
10 NaN 4 7 78 8 55 32 2 918 34 94
11 NaN 8 3 9 3 3 5 6 0 12 1
12 NaN 4 23 2 5 7 6 55 37 59 73
13 NaN 3 27 45 66 33 4 22 91 78 46
14 NaN 8 3 6 32 65 3 6 12 6 51
15 NaN 7 11 7 84 34 898 23 68 101 21
I have a separate dataframe of a processed version of these numbers where:
some of the header rows from above have been deleted,
the column names have been changed
Here is the second dataframe:
df_processed = pd.DataFrame(zip(*both_values),columns=processed_cols)
df_processed = df_processed[[3,4,9,7,0,2,1,6,8,5]]
8_1 8_2 24_3 24_1 c_1trial 14_2 14_1 28_1 24_2 8_3
0 4 2 12 34 1 65 6 1 51 22
1 3 3 71 37 2 3 5 6 20 1
2 6 11 34 46 3 6 3 3 1 6
3 8 55 94 918 4 78 7 2 34 32
4 3 3 1 0 8 9 3 6 12 5
5 5 7 73 37 4 2 23 55 59 6
6 66 33 46 91 3 45 27 22 78 4
7 32 65 51 12 8 6 3 6 6 3
8 84 34 21 68 7 7 11 23 101 898
Common parts of each dataframe:
For each column, rows 8 onwards of the raw dataframe are the same as row 1 onwards from the processed dataframe. The order of columns in both dataframes is not the same.
Output combination:
I am looking to compare rows 8-16 in columns 1-10 of the raw dataframe dr_raw to the processed dataframe df_processed. If the columns match each other, then I would like to extract rows 1-7 of the df_raw and the column header from df_processed.
Example:
the values in column c_1trial only matches values in rows 8-16 from the column 07_08_19 #1. I would 2 steps: (1) I would like to find some way to determine that these 2 columns are matching each other, (2) if 2 columns do match eachother, then in the sample output, I would like to select rows from the matching columns.
Here is the output I am looking to get:
Tr_id 07_08_19 #1 07_08_19 #2 07_08_19 #2.1 11_31_19 #1 11_31_19 #1.1 11_31_19 #1.3 12_15_20 #1 12_15_20 #2 12_15_20 #2.1 12_15_20 #2.2
Quantity1 1 1 2 1 2 3 1 1 2 3
Quantity2 75 11 0.9 70 60 17 6 3 5 7
Quantity3 9 20 17 4 74 12 34 43 92 11
Proc_Name c_1trial 14_1 14_2 8_1 8_2 8_3 28_1 24_1 24_2 24_3
Quantity4 7 -17 102 75 41 -89 496 12 17 62
Quantity5 -4 12 56 0.8 -36 30 -84 -23 64 -11
Quantity6 0.4 0.8 0.6 0.4 0.3 0.1 0.5 0.5 0.5 0.5
TimeStamp 07/08/2019 05:11 07/08/2019 10:54 07/08/2019 21:04 11/31/2019 11:15 11/31/2019 16:50 11/31/2019 21:33 12/15/2020 01:36 12/15/2020 07:01 12/15/2020 11:15 12/15/2020 21:45
My attempts are giving trouble:
print (df_raw.iloc[7:,1:] == df_processed).all(axis=1)
gives
ValueError: Can only compare identically-labeled DataFrame objects
and
print (df_raw.ix[7:].values == df_processed.values) #gives False
gives
False
The problem with my second attempt is that I am not selecting .all(axis=1). When I make a comparison I want to do this across all rows of every column, not just one row.
Question:
Is there a way to select out the output I showed above from these 2 dataframes?

Does this look like the output you're looking for?
Raw dataframe df:
Tr_id 07_08_19 07_08_19.1 07_08_19.2 11_31_19 11_31_19.1
0 Quantity1 1 1 2 1 2
1 Quantity2 75 11 0.9 70 60
2 Quantity3 9 20 17 4 74
3 Quantity4 7 -17 102 75 41
4 Quantity5 -4 12 56 0.8 -36
5 Quantity6 0.4 0.8 0.6 0.4 0.3
6 TimeStamp 07/08/2019 07/08/2019 07/08/2019 11/31/2019 11/31/2019
7 NaN 1 6 65 4 2
8 NaN 2 5 3 3 3
9 NaN 3 3 6 6 11
10 NaN 4 7 78 8 55
11 NaN 8 3 9 3 3
12 NaN 4 23 2 5 7
13 NaN 3 27 45 66 33
14 NaN 8 3 6 32 65
15 NaN 7 11 7 84 34
11_31_19.2 12_15_20 12_15_20.1 12_15_20.2 12_15_20.3
0 3 1 1 2 3
1 17 6 3 5 7
2 12 34 43 92 11
3 -89 496 12 17 62
4 30 -84 -23 64 -11
5 0.1 0.5 0.5 0.5 0.5
6 11/31/2019 12/15/2020 12/15/2020 12/15/2020 12/15/2020
7 22 1 34 51 12
8 1 6 37 20 71
9 6 3 46 1 34
10 32 2 918 34 94
11 5 6 0 12 1
12 6 55 37 59 73
13 4 22 91 78 46
14 3 6 12 6 51
15 898 23 68 101 21
Processed dataframe dfp:
8_1 8_2 24_3 24_1 c_1trial 14_2 14_1 28_1 24_2 8_3
0 4 2 12 34 1 65 6 1 51 22
1 3 3 71 37 2 3 5 6 20 1
2 6 11 34 46 3 6 3 3 1 6
3 8 55 94 918 4 78 7 2 34 32
4 3 3 1 0 8 9 3 6 12 5
5 5 7 73 37 4 2 23 55 59 6
6 66 33 46 91 3 45 27 22 78 4
7 32 65 51 12 8 6 3 6 6 3
8 84 34 21 68 7 7 11 23 101 898
Code:
df = pd.read_csv('raw_df.csv') # raw dataframe
dfp = pd.read_csv('processed_df.csv') # processed dataframe
dfr = df.drop('Tr_id', axis=1)
x = pd.DataFrame()
for col_raw in dfr.columns:
for col_p in dfp.columns:
if (dfr.tail(9).astype(int)[col_raw] == dfp[col_p]).all():
series = dfr[col_raw].head(7).tolist()
series.append(col_raw)
x[col_p] = series
x = pd.concat([df['Tr_id'].head(7), x], axis=1)
Output:
Tr_id c_1trial 14_1 14_2 8_1 8_2
0 Quantity1 1 1 2 1 2
1 Quantity2 75 11 0.9 70 60
2 Quantity3 9 20 17 4 74
3 Quantity4 7 -17 102 75 41
4 Quantity5 -4 12 56 0.8 -36
5 Quantity6 0.4 0.8 0.6 0.4 0.3
6 TimeStamp 07/08/2019 07/08/2019 07/08/2019 11/31/2019 11/31/2019
7 NaN 07_08_19 07_08_19.1 07_08_19.2 11_31_19 11_31_19.1
8_3 28_1 24_1 24_2 24_3
0 3 1 1 2 3
1 17 6 3 5 7
2 12 34 43 92 11
3 -89 496 12 17 62
4 30 -84 -23 64 -11
5 0.1 0.5 0.5 0.5 0.5
6 11/31/2019 12/15/2020 12/15/2020 12/15/2020 12/15/2020
7 11_31_19.2 12_15_20 12_15_20.1 12_15_20.2 12_15_20.3
I think the code could be more concise but maybe this does the job.

alternative solution, using DataFrame.isin() method:
In [171]: df1
Out[171]:
a b c
0 1 1 3
1 0 2 4
2 4 2 2
3 0 3 3
4 0 4 4
In [172]: df2
Out[172]:
a b c
0 0 3 3
1 1 1 1
2 0 3 4
3 4 2 3
4 0 4 4
In [173]: common = pd.merge(df1, df2)
In [174]: common
Out[174]:
a b c
0 0 3 3
1 0 4 4
In [175]: df1[df1.isin(common.to_dict('list')).all(axis=1)]
Out[175]:
a b c
3 0 3 3
4 0 4 4
Or if you want to subtract second data set from the first one. I.e. Pandas equivalent for SQL's:
select col1, .., colN from tableA
minus
select col1, .., colN from tableB
in Pandas:
In [176]: df1[~df1.isin(common.to_dict('list')).all(axis=1)]
Out[176]:
a b c
0 1 1 3
1 0 2 4
2 4 2 2

I came up with this using loops. It is very disappointing:
holder = []
for randm,pp in enumerate(list(df_processed)):
list1 = df_processed[pp].tolist()
for car,rr in enumerate(list(df_raw)):
list2 = df_raw.loc[7:,rr].tolist()
if list1==list2:
holder.append([rr,pp])
df_intermediate = pd.DataFrame(holder,columns=['A','B'])
df_c = df_raw.loc[:6,df_intermediate.iloc[:,0].tolist()]
df_c.loc[df_c.shape[0]] = df_intermediate.iloc[:,1].tolist()
df_c.insert(0,list(df_raw)[0],df_raw[list(df_raw)[0]])
df_c.iloc[-1,0]='Proc_Name'
df_c = df_c.reindex([0,1,2]+[7]+[3,4,5,6]).reset_index(drop=True)
Output:
Tr_id 11_31_19 #1 11_31_19 #1.1 12_15_20 #2.2 12_15_20 #2 07_08_19 #1 07_08_19 #2.1 07_08_19 #2 12_15_20 #1 12_15_20 #2.1 11_31_19 #1.3
0 Quantity1 1 2 3 1 1 2 1 1 2 3
1 Quantity2 70 60 7 3 75 0.9 11 6 5 17
2 Quantity3 4 74 11 43 9 17 20 34 92 12
3 Proc_Name 8_1 8_2 24_3 24_1 c_1trial 14_2 14_1 28_1 24_2 8_3
4 Quantity4 75 41 62 12 7 102 -17 496 17 -89
5 Quantity5 0.8 -36 -11 -23 -4 56 12 -84 64 30
6 Quantity6 0.4 0.3 0.5 0.5 0.4 0.6 0.8 0.5 0.5 0.1
7 TimeStamp 11/31/2019 11:15 11/31/2019 16:50 12/15/2020 21:45 12/15/2020 07:01 07/08/2019 05:11 07/08/2019 21:04 07/08/2019 10:54 12/15/2020 01:36 12/15/2020 11:15 11/31/2019 21:33
The order of the columns is different than what I required, but that is a minor problem.
The real problem with this approach is using loops.
I wish there was a better way to do this using some built-in Pandas functionality. If you have a better solution, please post it. thank you.

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