I am very new to subprocess, and I have a hard debugging it without any error code.
I'm trying to automatically call an API which respond to :
http -f POST https://api-adresse.data.gouv.fr/search/csv/ columns=voie columns=ville data#path/to/file.csv > response_file.csv
I've tried various combination with subprocess.call, but I only manage to get "1" as an error code.
What is the correct way to format this call, knowing that the answer from the API has to go in a csv file, and that I send a csv (path after the #data)?
EDIT: Here are my attempts :
ret = subprocess.call(cmd,shell=True)
ret = subprocess.call(cmd.split(),shell=True)
ret = subprocess.call([cmd],shell=True)
The same with shell = False, and with stdout = myFileHandler (open inside a with open(file,"w") as myFileHandler:)
EDIT2 : still curious about the answer, but I managed to go around with Request, as #spectras suggested
file_path = "PATH/TO/OUTPUT/FILE.csv"
url = "https://api-adresse.data.gouv.fr/search/csv/"
files = {'data': open('PATH/TO/CSV/FILE.csv','rb')}
values = {'columns': 'Adresse', 'columns': 'Ville', 'postcode': 'CP'}
r = requests.post(url, files=files, data=values)
with open(file_path, "w") as myFh:
myFh.write(r.content)
Since you are attempting to send a form, may I suggest you do it straight from python?
import requests
with open('path/to/file', 'rb') as fd:
payload = fd.read()
r = requests.post(
'https://api-adresse.data.gouv.fr/search/csv/',
data=(
('columns', 'voie'),
('columns', 'ville'),
),
files={
'data': ('filename.csv', payload, 'text/csv'),
}
)
if r.status_code not in requests.codes.ok:
r.raise_for_status()
with open('response_file.csv', 'wb') as result:
result.write(r.content)
This uses the ubiquitous python-requests module, and especially the form file upload part of the documentation.
It's untested. Basically, I opened httpie documentation and converted your command line arguments into python-requests api arguments.
Related
I'm trying to send a POST API call using requests in Python, but I'm running into a problem with how to pass both json data and multipart file at the same time. I can get it to work in Insomnia, but then recreating that in a Python module with variables that I am populating is difficult.
The API documentation says there are two parameters -- file and metadata. metadata is a json object that includes keys including matter, title, and description. matter is required. All of the options that I've looked at result with a response that the matter parameter is missing.
I've tried using requests_toolkit and it's multipart encoder:
matter_id = 5
payload_data = {}
payload_data['matter'] = matter_id
mp_encoder = MultipartEncoder(fields={'metadata': "{" + str(payload_data) + "}", 'file': (None, open(file_path, 'rb'), 'text/plain') })
response = requests.post(url, data=mp_encoder, headers={'Content-Type': mp_encoder.content_type}, auth=(apiuser, apipassword))
If I didn't use str(payload_data), I got errors about encoding. I tried adding the extra {} but that didn't seem to make that happen either.
I've tried with just requests:
matter_id = 5
payload_data = {}
payload_data['matter'] = matter_id
file_content = {'file': open(file_path, 'rb')}
payload = {'metadata': payload_data}
response = requests.post(url, data=payload, files=file_content, auth=(apiuser, apipassword))
I also tried payload=payload, params=payload instead of data=payload and no luck.
In the above example, I tried combining the payload and file_content into one dictionary to pass in the files parameter:
payloadv2 = {'file': (None, open(file_path, 'rb')), 'metadata': (None, {'matter': matter_id})}
And that also didn't work.
You should convert python dict to JSON string representation using json.dumps(payload_data) instead of concatenating "{" and "}" since the latter might be error-prone.
I'm currently struggling with a really simple problem, but cant spot the problem in detail.
I want to upload a file via requests.post, the current approach looks kinda like:
fin = open(f"{path_dtl}{filename}.dtl", "rb")
files = {"file": fin}
headers = CaseInsensitiveDict()
headers["Authorization"] = f"Bearer {auth_token}"
headers["Content-Type"] = "application/octet-stream"
headers["Content-Disposition"] = f"form-data;filename ='{filename}.dtl'"
upload_dtl = requests.post(url, headers=headers, files=files)
The result is a {'error': 'Invalid Media Type/Mime Type'} response. Is there a need to open a .dtl file in different manner? The usage of a request with this configuration via Postman works fine so I guess I missed a silly mistake. Thanks in advance.
UPDATE
Alright... for anyone interested. The cause of the issue was the default key-value "file" in files = {"file": fin} is different for my API. Following workaround fixed my issue.
with open(f"{path_dtl}{filename}.dtl", "rb") as f: files = f.read()
...
upload_dtl = requests.post(url, headers=headers, files=files)
Have you tried specifying a type? You can do so like this:
files = {'file': ('aaa.csv', open('aaa.csv', 'rb'),'text/csv')}
I'm performing a simple task of uploading a file using Python requests library. I searched Stack Overflow and no one seemed to have the same problem, namely, that the file is not received by the server:
import requests
url='http://nesssi.cacr.caltech.edu/cgi-bin/getmulticonedb_release2.cgi/post'
files={'files': open('file.txt','rb')}
values={'upload_file' : 'file.txt' , 'DB':'photcat' , 'OUT':'csv' , 'SHORT':'short'}
r=requests.post(url,files=files,data=values)
I'm filling the value of 'upload_file' keyword with my filename, because if I leave it blank, it says
Error - You must select a file to upload!
And now I get
File file.txt of size bytes is uploaded successfully!
Query service results: There were 0 lines.
Which comes up only if the file is empty. So I'm stuck as to how to send my file successfully. I know that the file works because if I go to this website and manually fill in the form it returns a nice list of matched objects, which is what I'm after. I'd really appreciate all hints.
Some other threads related (but not answering my problem):
Send file using POST from a Python script
http://docs.python-requests.org/en/latest/user/quickstart/#response-content
Uploading files using requests and send extra data
http://docs.python-requests.org/en/latest/user/advanced/#body-content-workflow
If upload_file is meant to be the file, use:
files = {'upload_file': open('file.txt','rb')}
values = {'DB': 'photcat', 'OUT': 'csv', 'SHORT': 'short'}
r = requests.post(url, files=files, data=values)
and requests will send a multi-part form POST body with the upload_file field set to the contents of the file.txt file.
The filename will be included in the mime header for the specific field:
>>> import requests
>>> open('file.txt', 'wb') # create an empty demo file
<_io.BufferedWriter name='file.txt'>
>>> files = {'upload_file': open('file.txt', 'rb')}
>>> print(requests.Request('POST', 'http://example.com', files=files).prepare().body.decode('ascii'))
--c226ce13d09842658ffbd31e0563c6bd
Content-Disposition: form-data; name="upload_file"; filename="file.txt"
--c226ce13d09842658ffbd31e0563c6bd--
Note the filename="file.txt" parameter.
You can use a tuple for the files mapping value, with between 2 and 4 elements, if you need more control. The first element is the filename, followed by the contents, and an optional content-type header value and an optional mapping of additional headers:
files = {'upload_file': ('foobar.txt', open('file.txt','rb'), 'text/x-spam')}
This sets an alternative filename and content type, leaving out the optional headers.
If you are meaning the whole POST body to be taken from a file (with no other fields specified), then don't use the files parameter, just post the file directly as data. You then may want to set a Content-Type header too, as none will be set otherwise. See Python requests - POST data from a file.
(2018) the new python requests library has simplified this process, we can use the 'files' variable to signal that we want to upload a multipart-encoded file
url = 'http://httpbin.org/post'
files = {'file': open('report.xls', 'rb')}
r = requests.post(url, files=files)
r.text
Client Upload
If you want to upload a single file with Python requests library, then requests lib supports streaming uploads, which allow you to send large files or streams without reading into memory.
with open('massive-body', 'rb') as f:
requests.post('http://some.url/streamed', data=f)
Server Side
Then store the file on the server.py side such that save the stream into file without loading into the memory. Following is an example with using Flask file uploads.
#app.route("/upload", methods=['POST'])
def upload_file():
from werkzeug.datastructures import FileStorage
FileStorage(request.stream).save(os.path.join(app.config['UPLOAD_FOLDER'], filename))
return 'OK', 200
Or use werkzeug Form Data Parsing as mentioned in a fix for the issue of "large file uploads eating up memory" in order to avoid using memory inefficiently on large files upload (s.t. 22 GiB file in ~60 seconds. Memory usage is constant at about 13 MiB.).
#app.route("/upload", methods=['POST'])
def upload_file():
def custom_stream_factory(total_content_length, filename, content_type, content_length=None):
import tempfile
tmpfile = tempfile.NamedTemporaryFile('wb+', prefix='flaskapp', suffix='.nc')
app.logger.info("start receiving file ... filename => " + str(tmpfile.name))
return tmpfile
import werkzeug, flask
stream, form, files = werkzeug.formparser.parse_form_data(flask.request.environ, stream_factory=custom_stream_factory)
for fil in files.values():
app.logger.info(" ".join(["saved form name", fil.name, "submitted as", fil.filename, "to temporary file", fil.stream.name]))
# Do whatever with stored file at `fil.stream.name`
return 'OK', 200
You can send any file via post api while calling the API just need to mention files={'any_key': fobj}
import requests
import json
url = "https://request-url.com"
headers = {"Content-Type": "application/json; charset=utf-8"}
with open(filepath, 'rb') as fobj:
response = requests.post(url, headers=headers, files={'file': fobj})
print("Status Code", response.status_code)
print("JSON Response ", response.json())
#martijn-pieters answer is correct, however I wanted to add a bit of context to data= and also to the other side, in the Flask server, in the case where you are trying to upload files and a JSON.
From the request side, this works as Martijn describes:
files = {'upload_file': open('file.txt','rb')}
values = {'DB': 'photcat', 'OUT': 'csv', 'SHORT': 'short'}
r = requests.post(url, files=files, data=values)
However, on the Flask side (the receiving webserver on the other side of this POST), I had to use form
#app.route("/sftp-upload", methods=["POST"])
def upload_file():
if request.method == "POST":
# the mimetype here isnt application/json
# see here: https://stackoverflow.com/questions/20001229/how-to-get-posted-json-in-flask
body = request.form
print(body) # <- immutable dict
body = request.get_json() will return nothing. body = request.get_data() will return a blob containing lots of things like the filename etc.
Here's the bad part: on the client side, changing data={} to json={} results in this server not being able to read the KV pairs! As in, this will result in a {} body above:
r = requests.post(url, files=files, json=values). # No!
This is bad because the server does not have control over how the user formats the request; and json= is going to be the habbit of requests users.
Upload:
with open('file.txt', 'rb') as f:
files = {'upload_file': f.read()}
values = {'DB': 'photcat', 'OUT': 'csv', 'SHORT': 'short'}
r = requests.post(url, files=files, data=values)
Download (Django):
with open('file.txt', 'wb') as f:
f.write(request.FILES['upload_file'].file.read())
Regarding the answers given so far, there was always something missing that prevented it to work on my side. So let me show you what worked for me:
import json
import os
import requests
API_ENDPOINT = "http://localhost:80"
access_token = "sdfJHKsdfjJKHKJsdfJKHJKysdfJKHsdfJKHs" # TODO: get fresh Token here
def upload_engagement_file(filepath):
url = API_ENDPOINT + "/api/files" # add any URL parameters if needed
hdr = {"Authorization": "Bearer %s" % access_token}
with open(filepath, "rb") as fobj:
file_obj = fobj.read()
file_basename = os.path.basename(filepath)
file_to_upload = {"file": (str(file_basename), file_obj)}
finfo = {"fullPath": filepath}
upload_response = requests.post(url, headers=hdr, files=file_to_upload, data=finfo)
fobj.close()
# print("Status Code ", upload_response.status_code)
# print("JSON Response ", upload_response.json())
return upload_response
Note that requests.post(...) needs
a url parameter, containing the full URL of the API endpoint you're calling, using the API_ENDPOINT, assuming we have an http://localhost:8000/api/files endpoint to POST a file
a headers parameter, containing at least the authorization (bearer token)
a files parameter taking the name of the file plus the entire file content
a data parameter taking just the path and file name
Installation required (console):
pip install requests
What you get back from the function call is a response object containing a status code and also the full error message in JSON format. The commented print statements at the end of upload_engagement_file are showing you how you can access them.
Note: Some useful additional information about the requests library can be found here
Some may need to upload via a put request and this is slightly different that posting data. It is important to understand how the server expects the data in order to form a valid request. A frequent source of confusion is sending multipart-form data when it isn't accepted. This example uses basic auth and updates an image via a put request.
url = 'foobar.com/api/image-1'
basic = requests.auth.HTTPBasicAuth('someuser', 'password123')
# Setting the appropriate header is important and will vary based
# on what you upload
headers = {'Content-Type': 'image/png'}
with open('image-1.png', 'rb') as img_1:
r = requests.put(url, auth=basic, data=img_1, headers=headers)
While the requests library makes working with http requests a lot easier, some of its magic and convenience obscures just how to craft more nuanced requests.
In Ubuntu you can apply this way,
to save file at some location (temporary) and then open and send it to API
path = default_storage.save('static/tmp/' + f1.name, ContentFile(f1.read()))
path12 = os.path.join(os.getcwd(), "static/tmp/" + f1.name)
data={} #can be anything u want to pass along with File
file1 = open(path12, 'rb')
header = {"Content-Disposition": "attachment; filename=" + f1.name, "Authorization": "JWT " + token}
res= requests.post(url,data,header)
I'm having a zip file that needs to be uploaded. When I use the CURL command, it is uploading it but when I try the same using Python Requests, i get HTTP 405 Method Not Allowed.
The zip file is usually around 500kb.
Curl command -
curl -u<username>:<password> -T /log/system/check/index.zip "<target URL>"
Python Script (tried 2 different ways) -
1:
import requests
files = {'file': open('/log/system/check/index.zip', 'rb')}
r = requests.post(url, files=files, auth=('<username>', '<password>'))
2:
import requests
fileobj = open('/log/system/check/index.zip', 'rb')
r = requests.post(url, auth=('<username>', '<password>'), files={"archive": ("index.zip", fileobj)})
Am I missing something obvious?
may be this will help you.
with open(zipname, 'rb') as f:
uploadbase = requests.put('url',
auth=(base, pwd),
data=f,
headers={'X-File-Name' : zipname,
'Content-Disposition': 'form-data; name="{0}"; filename="{0}"'.format(zipname),
'content-type': 'multipart/form-data'})
the difference between put and post
curl -T ... uses PUT method instead of POST.
As the error message says, you should use
r = requests.put(url, ...)
I'm performing a simple task of uploading a file using Python requests library. I searched Stack Overflow and no one seemed to have the same problem, namely, that the file is not received by the server:
import requests
url='http://nesssi.cacr.caltech.edu/cgi-bin/getmulticonedb_release2.cgi/post'
files={'files': open('file.txt','rb')}
values={'upload_file' : 'file.txt' , 'DB':'photcat' , 'OUT':'csv' , 'SHORT':'short'}
r=requests.post(url,files=files,data=values)
I'm filling the value of 'upload_file' keyword with my filename, because if I leave it blank, it says
Error - You must select a file to upload!
And now I get
File file.txt of size bytes is uploaded successfully!
Query service results: There were 0 lines.
Which comes up only if the file is empty. So I'm stuck as to how to send my file successfully. I know that the file works because if I go to this website and manually fill in the form it returns a nice list of matched objects, which is what I'm after. I'd really appreciate all hints.
Some other threads related (but not answering my problem):
Send file using POST from a Python script
http://docs.python-requests.org/en/latest/user/quickstart/#response-content
Uploading files using requests and send extra data
http://docs.python-requests.org/en/latest/user/advanced/#body-content-workflow
If upload_file is meant to be the file, use:
files = {'upload_file': open('file.txt','rb')}
values = {'DB': 'photcat', 'OUT': 'csv', 'SHORT': 'short'}
r = requests.post(url, files=files, data=values)
and requests will send a multi-part form POST body with the upload_file field set to the contents of the file.txt file.
The filename will be included in the mime header for the specific field:
>>> import requests
>>> open('file.txt', 'wb') # create an empty demo file
<_io.BufferedWriter name='file.txt'>
>>> files = {'upload_file': open('file.txt', 'rb')}
>>> print(requests.Request('POST', 'http://example.com', files=files).prepare().body.decode('ascii'))
--c226ce13d09842658ffbd31e0563c6bd
Content-Disposition: form-data; name="upload_file"; filename="file.txt"
--c226ce13d09842658ffbd31e0563c6bd--
Note the filename="file.txt" parameter.
You can use a tuple for the files mapping value, with between 2 and 4 elements, if you need more control. The first element is the filename, followed by the contents, and an optional content-type header value and an optional mapping of additional headers:
files = {'upload_file': ('foobar.txt', open('file.txt','rb'), 'text/x-spam')}
This sets an alternative filename and content type, leaving out the optional headers.
If you are meaning the whole POST body to be taken from a file (with no other fields specified), then don't use the files parameter, just post the file directly as data. You then may want to set a Content-Type header too, as none will be set otherwise. See Python requests - POST data from a file.
(2018) the new python requests library has simplified this process, we can use the 'files' variable to signal that we want to upload a multipart-encoded file
url = 'http://httpbin.org/post'
files = {'file': open('report.xls', 'rb')}
r = requests.post(url, files=files)
r.text
Client Upload
If you want to upload a single file with Python requests library, then requests lib supports streaming uploads, which allow you to send large files or streams without reading into memory.
with open('massive-body', 'rb') as f:
requests.post('http://some.url/streamed', data=f)
Server Side
Then store the file on the server.py side such that save the stream into file without loading into the memory. Following is an example with using Flask file uploads.
#app.route("/upload", methods=['POST'])
def upload_file():
from werkzeug.datastructures import FileStorage
FileStorage(request.stream).save(os.path.join(app.config['UPLOAD_FOLDER'], filename))
return 'OK', 200
Or use werkzeug Form Data Parsing as mentioned in a fix for the issue of "large file uploads eating up memory" in order to avoid using memory inefficiently on large files upload (s.t. 22 GiB file in ~60 seconds. Memory usage is constant at about 13 MiB.).
#app.route("/upload", methods=['POST'])
def upload_file():
def custom_stream_factory(total_content_length, filename, content_type, content_length=None):
import tempfile
tmpfile = tempfile.NamedTemporaryFile('wb+', prefix='flaskapp', suffix='.nc')
app.logger.info("start receiving file ... filename => " + str(tmpfile.name))
return tmpfile
import werkzeug, flask
stream, form, files = werkzeug.formparser.parse_form_data(flask.request.environ, stream_factory=custom_stream_factory)
for fil in files.values():
app.logger.info(" ".join(["saved form name", fil.name, "submitted as", fil.filename, "to temporary file", fil.stream.name]))
# Do whatever with stored file at `fil.stream.name`
return 'OK', 200
You can send any file via post api while calling the API just need to mention files={'any_key': fobj}
import requests
import json
url = "https://request-url.com"
headers = {"Content-Type": "application/json; charset=utf-8"}
with open(filepath, 'rb') as fobj:
response = requests.post(url, headers=headers, files={'file': fobj})
print("Status Code", response.status_code)
print("JSON Response ", response.json())
#martijn-pieters answer is correct, however I wanted to add a bit of context to data= and also to the other side, in the Flask server, in the case where you are trying to upload files and a JSON.
From the request side, this works as Martijn describes:
files = {'upload_file': open('file.txt','rb')}
values = {'DB': 'photcat', 'OUT': 'csv', 'SHORT': 'short'}
r = requests.post(url, files=files, data=values)
However, on the Flask side (the receiving webserver on the other side of this POST), I had to use form
#app.route("/sftp-upload", methods=["POST"])
def upload_file():
if request.method == "POST":
# the mimetype here isnt application/json
# see here: https://stackoverflow.com/questions/20001229/how-to-get-posted-json-in-flask
body = request.form
print(body) # <- immutable dict
body = request.get_json() will return nothing. body = request.get_data() will return a blob containing lots of things like the filename etc.
Here's the bad part: on the client side, changing data={} to json={} results in this server not being able to read the KV pairs! As in, this will result in a {} body above:
r = requests.post(url, files=files, json=values). # No!
This is bad because the server does not have control over how the user formats the request; and json= is going to be the habbit of requests users.
Upload:
with open('file.txt', 'rb') as f:
files = {'upload_file': f.read()}
values = {'DB': 'photcat', 'OUT': 'csv', 'SHORT': 'short'}
r = requests.post(url, files=files, data=values)
Download (Django):
with open('file.txt', 'wb') as f:
f.write(request.FILES['upload_file'].file.read())
Regarding the answers given so far, there was always something missing that prevented it to work on my side. So let me show you what worked for me:
import json
import os
import requests
API_ENDPOINT = "http://localhost:80"
access_token = "sdfJHKsdfjJKHKJsdfJKHJKysdfJKHsdfJKHs" # TODO: get fresh Token here
def upload_engagement_file(filepath):
url = API_ENDPOINT + "/api/files" # add any URL parameters if needed
hdr = {"Authorization": "Bearer %s" % access_token}
with open(filepath, "rb") as fobj:
file_obj = fobj.read()
file_basename = os.path.basename(filepath)
file_to_upload = {"file": (str(file_basename), file_obj)}
finfo = {"fullPath": filepath}
upload_response = requests.post(url, headers=hdr, files=file_to_upload, data=finfo)
fobj.close()
# print("Status Code ", upload_response.status_code)
# print("JSON Response ", upload_response.json())
return upload_response
Note that requests.post(...) needs
a url parameter, containing the full URL of the API endpoint you're calling, using the API_ENDPOINT, assuming we have an http://localhost:8000/api/files endpoint to POST a file
a headers parameter, containing at least the authorization (bearer token)
a files parameter taking the name of the file plus the entire file content
a data parameter taking just the path and file name
Installation required (console):
pip install requests
What you get back from the function call is a response object containing a status code and also the full error message in JSON format. The commented print statements at the end of upload_engagement_file are showing you how you can access them.
Note: Some useful additional information about the requests library can be found here
Some may need to upload via a put request and this is slightly different that posting data. It is important to understand how the server expects the data in order to form a valid request. A frequent source of confusion is sending multipart-form data when it isn't accepted. This example uses basic auth and updates an image via a put request.
url = 'foobar.com/api/image-1'
basic = requests.auth.HTTPBasicAuth('someuser', 'password123')
# Setting the appropriate header is important and will vary based
# on what you upload
headers = {'Content-Type': 'image/png'}
with open('image-1.png', 'rb') as img_1:
r = requests.put(url, auth=basic, data=img_1, headers=headers)
While the requests library makes working with http requests a lot easier, some of its magic and convenience obscures just how to craft more nuanced requests.
In Ubuntu you can apply this way,
to save file at some location (temporary) and then open and send it to API
path = default_storage.save('static/tmp/' + f1.name, ContentFile(f1.read()))
path12 = os.path.join(os.getcwd(), "static/tmp/" + f1.name)
data={} #can be anything u want to pass along with File
file1 = open(path12, 'rb')
header = {"Content-Disposition": "attachment; filename=" + f1.name, "Authorization": "JWT " + token}
res= requests.post(url,data,header)