Develop Reference

Mac m1 pyodbc.connect causes zsh: abort

When I run pyodbc.connect(...) my python crashes and I get zsh: abort error in terminal.
Running:
Mac M1 Pro Monterey
Python 3.8.9
Installed MS ODBC drivers (tried 17 and 18).
Tried running in base Python and virtual environments.
In base python, I get the following system error:
Translated Report (Full Report Below)
Process: Python [1869]
Path: /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/Resources/Python.app/Contents/MacOS/Python
Identifier: com.apple.python3
Version: 3.8.9 (3.8.9)
Build Info: python3-103000000000000~1538
Code Type: ARM-64 (Native)
Parent Process: zsh [611]
Responsible: Terminal [80951]
User ID: 501
Date/Time: 2022-03-08 17:42:55.3063 +0200
OS Version: macOS 12.2.1 (21D62)
Report Version: 12
Anonymous UUID: 919246FC-3C09-6151-CCAB-05C65A4A9B63
Sleep/Wake UUID: 4CFF985F-843A-4C63-ABC8-97435300AADE
Time Awake Since Boot: 370000 seconds
Time Since Wake: 2014 seconds
System Integrity Protection: enabled
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
stack buffer overflow
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x18ff659b8 __pthread_kill + 8
1 libsystem_pthread.dylib 0x18ff98eb0 pthread_kill + 288
2 libsystem_c.dylib 0x18fed63a0 __abort + 128
3 libsystem_c.dylib 0x18fec818c __stack_chk_fail + 96
4 pyodbc.cpython-38-darwin.so 0x102c4f5d4 GetErrorFromHandle(Connection*, char const*, void*, void*) + 1024
5 pyodbc.cpython-38-darwin.so 0x102c4f188 RaiseErrorFromHandle(Connection*, char const*, void*, void*) + 16
6 pyodbc.cpython-38-darwin.so 0x102c48cf0 Connection_New(_object*, bool, bool, long, bool, _object*, Object&) + 1324
7 pyodbc.cpython-38-darwin.so 0x102c54b34 mod_connect(_object*, _object*, _object*) + 1468
8 Python3 0x103185968 cfunction_call_varargs + 140
9 Python3 0x103185368 _PyObject_MakeTpCall + 372
10 Python3 0x1032523fc call_function + 448
11 Python3 0x10324f800 _PyEval_EvalFrameDefault + 23692
12 Python3 0x1032532e4 _PyEval_EvalCodeWithName + 3048
13 Python3 0x103249ae0 PyEval_EvalCode + 60
14 Python3 0x10328f384 PyRun_InteractiveOneObjectEx + 712
15 Python3 0x10328e92c PyRun_InteractiveLoopFlags + 156
16 Python3 0x10328e84c PyRun_AnyFileExFlags + 72
17 Python3 0x1032ac808 Py_RunMain + 2120
18 Python3 0x1032acb1c pymain_main + 340
19 Python3 0x1032acb98 Py_BytesMain + 40
20 dyld 0x1029ed0f4 start + 520
(this is just a small extract of the report because I can't figure out how to "embed" the full report in a scrollable object in my post)
I have tried zsh: abort python error when I try to run the app in venv
Any help is appreciated.

on macOS, application bundle zipped up using python shutil make_archive() crashes when unzipped

I was trying to zip up an application bundle using shutil.make_archive using zip format, like this
app_pkg = '/path/to/my.app'
shutil.make_archive(app_pkg, 'zip', '/path/to/installer')
The produced zip file extracts to /path/to/installer without issues.
But the app inside the installer folder, i.e., /path/to/installer/my.app, crashes when double-clicked.
The full crash log looks like this
Process: mia [32751]
Path: /Users/USER/Desktop/*/mia.app/Contents/MacOS/mia
Identifier: com.example.mia
Version: 1.0.0 (1)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: mia [32751]
User ID: 527235363
Date/Time: 2021-06-06 20:20:49.763 +0800
OS Version: macOS 11.3.1 (20E241)
Report Version: 12
Bridge OS Version: 5.3 (18P4556)
Anonymous UUID: 3D0E276C-DA9D-1DF6-7059-6A3AACF3A73D
Time Awake Since Boot: 1000000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
*** Terminating app due to uncaught exception 'NSInvalidArgumentException', reason: '*** -[__NSPlaceholderArray initWithObjects:count:]: attempt to insert nil object from objects[0]'
terminating with uncaught exception of type NSException
abort() called
Application Specific Backtrace 1:
0 CoreFoundation 0x00007fff208c798b __exceptionPreprocess + 242
1 libobjc.A.dylib 0x00007fff205ffd92 objc_exception_throw + 48
2 CoreFoundation 0x00007fff2097d32a _CFThrowFormattedException + 202
3 CoreFoundation 0x00007fff2097b581 -[__NSPlaceholderArray initWithCapacity:].cold.1 + 0
4 CoreFoundation 0x00007fff207d0230 -[__NSPlaceholderArray initWithObjects:count:] + 154
5 CoreFoundation 0x00007fff2082a793 +[NSArray arrayWithObjects:count:] + 40
6 FlutterMacOS 0x00000001055b1b14 -[FlutterEngine loadAOTData:] + 148
7 FlutterMacOS 0x00000001055b1766 -[FlutterEngine runWithEntrypoint:] + 1526
8 FlutterMacOS 0x00000001055be487 -[FlutterViewController launchEngine] + 87
9 FlutterMacOS 0x00000001055be0c5 -[FlutterViewController viewWillAppear] + 101
10 AppKit 0x00007fff23194320 -[NSViewController _sendViewWillAppear] + 40
11 AppKit 0x00007fff231941e0 -[NSViewController _windowWillOrderOnScreen] + 98
12 AppKit 0x00007fff238e91fe -[NSView _windowWillOrderOnScreen] + 67
13 AppKit 0x00007fff238e9294 -[NSView _windowWillOrderOnScreen] + 217
14 AppKit 0x00007fff23194071 -[NSWindow _doWindowWillBeVisibleAsSheet:] + 59
15 AppKit 0x00007fff2319201f -[NSWindow _reallyDoOrderWindowAboveOrBelow:relativeTo:findKey:forCounter:force:isModal:] + 1319
16 AppKit 0x00007fff231917a0 -[NSWindow _reallyDoOrderWindow:relativeTo:findKey:forCounter:force:isModal:] + 135
17 AppKit 0x00007fff23190797 -[NSWindow _doOrderWindow:relativeTo:findKey:forCounter:force:isModal:] + 289
18 AppKit 0x00007fff23190614 -[NSWindow orderWindow:relativeTo:] + 155
19 AppKit 0x00007fff2302675f -[NSIBObjectData nibInstantiateWithOwner:options:topLevelObjects:] + 2033
20 AppKit 0x00007fff2301abb8 loadNib + 392
21 AppKit 0x00007fff2301a1c4 +[NSBundle(NSNibLoading) _loadNibFile:nameTable:options:withZone:ownerBundle:] + 693
22 AppKit 0x00007fff23019e1a -[NSBundle(NSNibLoading) loadNibNamed:owner:topLevelObjects:] + 201
23 AppKit 0x00007fff23019bf8 +[NSBundle(NSNibLoading) loadNibNamed:owner:] + 394
24 AppKit 0x00007fff2300c762 NSApplicationMain + 566
25 mia 0x000000010559b759 main + 9
26 libdyld.dylib 0x00007fff2076ff3d start + 1
27 ??? 0x0000000000000001 0x0 + 1
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff20725946 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff20754615 pthread_kill + 263
2 libsystem_c.dylib 0x00007fff206a9411 abort + 120
3 libc++abi.dylib 0x00007fff20717ef2 abort_message + 241
4 libc++abi.dylib 0x00007fff207095fd demangling_terminate_handler() + 266
5 libobjc.A.dylib 0x00007fff2060258d _objc_terminate() + 96
6 libc++abi.dylib 0x00007fff20717307 std::__terminate(void (*)()) + 8
7 libc++abi.dylib 0x00007fff20719beb __cxxabiv1::failed_throw(__cxxabiv1::__cxa_exception*) + 27
8 libc++abi.dylib 0x00007fff20719bb2 __cxa_throw + 116
9 libobjc.A.dylib 0x00007fff205ffec0 objc_exception_throw + 350
10 com.apple.CoreFoundation 0x00007fff2097d32a _CFThrowFormattedException + 202
11 com.apple.CoreFoundation 0x00007fff2097b581 -[__NSPlaceholderArray initWithObjects:count:].cold.3 + 38
12 com.apple.CoreFoundation 0x00007fff207d0230 -[__NSPlaceholderArray initWithObjects:count:] + 154
13 com.apple.CoreFoundation 0x00007fff2082a793 +[NSArray arrayWithObjects:count:] + 40
14 io.flutter.flutter-macos 0x00000001055b1b14 -[FlutterEngine loadAOTData:] + 148
15 io.flutter.flutter-macos 0x00000001055b1766 -[FlutterEngine runWithEntrypoint:] + 1526
16 io.flutter.flutter-macos 0x00000001055be487 -[FlutterViewController launchEngine] + 87
17 io.flutter.flutter-macos 0x00000001055be0c5 -[FlutterViewController viewWillAppear] + 101
18 com.apple.AppKit 0x00007fff23194320 -[NSViewController _sendViewWillAppear] + 40
19 com.apple.AppKit 0x00007fff231941e0 -[NSViewController _windowWillOrderOnScreen] + 98
20 com.apple.AppKit 0x00007fff238e91fe -[NSView _windowWillOrderOnScreen] + 67
21 com.apple.AppKit 0x00007fff238e9294 -[NSView _windowWillOrderOnScreen] + 217
22 com.apple.AppKit 0x00007fff23194071 -[NSWindow _doWindowWillBeVisibleAsSheet:] + 59
23 com.apple.AppKit 0x00007fff2319201f -[NSWindow _reallyDoOrderWindowAboveOrBelow:relativeTo:findKey:forCounter:force:isModal:] + 1319
24 com.apple.AppKit 0x00007fff231917a0 -[NSWindow _reallyDoOrderWindow:relativeTo:findKey:forCounter:force:isModal:] + 135
25 com.apple.AppKit 0x00007fff23190797 -[NSWindow _doOrderWindow:relativeTo:findKey:forCounter:force:isModal:] + 289
26 com.apple.AppKit 0x00007fff23190614 -[NSWindow orderWindow:relativeTo:] + 155
27 com.apple.AppKit 0x00007fff2302675f -[NSIBObjectData nibInstantiateWithOwner:options:topLevelObjects:] + 2033
28 com.apple.AppKit 0x00007fff2301abb8 loadNib + 392
29 com.apple.AppKit 0x00007fff2301a1c4 +[NSBundle(NSNibLoading) _loadNibFile:nameTable:options:withZone:ownerBundle:] + 693
30 com.apple.AppKit 0x00007fff23019e1a -[NSBundle(NSNibLoading) loadNibNamed:owner:topLevelObjects:] + 201
31 com.apple.AppKit 0x00007fff23019bf8 +[NSBundle(NSNibLoading) loadNibNamed:owner:] + 394
32 com.apple.AppKit 0x00007fff2300c762 NSApplicationMain + 566
33 com.example.mia 0x000000010559b759 main + 9 (AppDelegate.swift:5)
34 libdyld.dylib 0x00007fff2076ff3d start + 1
Thread 1:
0 libsystem_pthread.dylib 0x00007fff20750484 start_wqthread + 0
Thread 2:
0 libsystem_pthread.dylib 0x00007fff20750484 start_wqthread + 0
Thread 3:
0 libsystem_pthread.dylib 0x00007fff20750484 start_wqthread + 0
Thread 4:
0 libsystem_pthread.dylib 0x00007fff20750484 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010c7eae00 rcx: 0x00007ffeea664318 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007ffeea664340 rsp: 0x00007ffeea664318
r8: 0x00007ffeea6641e0 r9: 0x0000000000000000 r10: 0x000000010c7eae00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x0000003000000008 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff20725946 rfl: 0x0000000000000246 cr2: 0x00007fff87442fd0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
Binary Images:
0x105599000 - 0x10559cfff +com.example.mia (1.0.0 - 1) <6FDB6C75-DD8C-3E3A-AC4E-B7DE513EB0F5> /Users/USER/Desktop/*/mia.app/Contents/MacOS/mia
0x1055ad000 - 0x106014fff +io.flutter.flutter-macos (1.0 - 1.0) <E04597C4-4CD7-3C8C-9387-DE1D1C021257> /Users/USER/Desktop/*/mia.app/Contents/Frameworks/FlutterMacOS.framework/Versions/A/FlutterMacOS
0x1099c1000 - 0x1099d0fff libobjc-trampolines.dylib (824) <443A76FC-45AB-380A-98BF-EF0466708A33> /usr/lib/libobjc-trampolines.dylib
0x10a810000 - 0x10ab23fff +App (0) <7CF9C6C2-B0CB-33AD-B315-07BAFEA054D7> /Users/USER/Desktop/*/mia.app/Contents/Frameworks/App.framework/App
0x10c713000 - 0x10c7aefff dyld (851.27) <7EAA668B-F906-3BAA-A980-139BBE6E8766> /usr/lib/dyld
0x7fff2048c000 - 0x7fff2048dfff libsystem_blocks.dylib (79) <1C8538C3-F2BE-3F02-89AE-E7052DE66D51> /usr/lib/system/libsystem_blocks.dylib
0x7fff2048e000 - 0x7fff204c3fff libxpc.dylib (2038.100.48) <CFB56DA8-7462-3E8F-9CFB-20926C6A2BB5> /usr/lib/system/libxpc.dylib
0x7fff204c4000 - 0x7fff204dbfff libsystem_trace.dylib (1277.100.21) <1AAE1F8F-9F9D-3327-8A95-3A6887CED713> /usr/lib/system/libsystem_trace.dylib
0x7fff204dc000 - 0x7fff20579fff libcorecrypto.dylib (1000.100.38) <96A88875-7771-394E-A88E-389DCD02A935> /usr/lib/system/libcorecrypto.dylib
0x7fff2057a000 - 0x7fff205a6fff libsystem_malloc.dylib (317.100.9) <029B5632-62B4-39F6-981C-BCA99C1FBF1D> /usr/lib/system/libsystem_malloc.dylib
0x7fff205a7000 - 0x7fff205ebfff libdispatch.dylib (1271.100.5) <6B7B23E3-2FD4-3EA2-8A89-CE06244CCA98> /usr/lib/system/libdispatch.dylib
0x7fff205ec000 - 0x7fff20625fff libobjc.A.dylib (824) <929E3040-4605-3C14-885B-D742EF02F2CB> /usr/lib/libobjc.A.dylib
0x7fff20626000 - 0x7fff20628fff libsystem_featureflags.dylib (28.60.1) <FEA91919-A5BB-3606-9445-F2077D90BF87> /usr/lib/system/libsystem_featureflags.dylib
0x7fff20629000 - 0x7fff206b1fff libsystem_c.dylib (1439.100.3) <DF45CDEC-6B7E-3586-94B4-F3679A762661> /usr/lib/system/libsystem_c.dylib
0x7fff206b2000 - 0x7fff20707fff libc++.1.dylib (905.6) <B027735F-B398-381C-84A7-606D7BBE4997> /usr/lib/libc++.1.dylib
0x7fff20708000 - 0x7fff2071dfff libc++abi.dylib (905.6) <22AFC7FC-2DB6-3EF0-9CC0-EFFB9B65D5E2> /usr/lib/libc++abi.dylib
0x7fff2071e000 - 0x7fff2074dfff libsystem_kernel.dylib (7195.101.2) <62A19DE4-50C5-3866-B5B2-43220E379C3B> /usr/lib/system/libsystem_kernel.dylib
0x7fff2074e000 - 0x7fff20759fff libsystem_pthread.dylib (454.100.8) <52F807B1-41A0-3D1E-AE89-115CA570863F> /usr/lib/system/libsystem_pthread.dylib
0x7fff2075a000 - 0x7fff20795fff libdyld.dylib (851.27) <9F95C644-D1BD-38D9-9612-6188FE9EA53C> /usr/lib/system/libdyld.dylib
0x7fff20796000 - 0x7fff2079ffff libsystem_platform.dylib (254.80.2) <03429519-EBEA-3549-84A6-0FD426CB7373> /usr/lib/system/libsystem_platform.dylib
0x7fff207a0000 - 0x7fff207cbfff libsystem_info.dylib (542.40.3) <C189F0D7-A430-328D-BD7F-7EB0FA023736> /usr/lib/system/libsystem_info.dylib
0x7fff207cc000 - 0x7fff20c69fff com.apple.CoreFoundation (6.9 - 1775.118.101) <895AFD1C-0307-32B3-81CB-BA33DA368DE1> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff20c6a000 - 0x7fff20e9cfff com.apple.LaunchServices (1122.33 - 1122.33) <CBFF2714-646C-3DDB-906D-672E420683E6> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
0x7fff20e9d000 - 0x7fff20f70fff com.apple.gpusw.MetalTools (1.0 - 1) <CD0A257C-70F9-3C42-A13E-76FD54BEFD96> /System/Library/PrivateFrameworks/MetalTools.framework/Versions/A/MetalTools
0x7fff20f71000 - 0x7fff211cdfff libBLAS.dylib (1336.101.1) <28ABAD61-A323-33C6-8674-8A14118D4C20> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x7fff211ce000 - 0x7fff2121afff com.apple.Lexicon-framework (1.0 - 86.1) <27959773-C4F4-33BC-9A68-39EF2037F1E5> /System/Library/PrivateFrameworks/Lexicon.framework/Versions/A/Lexicon
0x7fff2121b000 - 0x7fff21289fff libSparse.dylib (106) <A666D9B0-8979-3C9C-83D6-1C0B535B8B0F> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparse.dylib
0x7fff2128a000 - 0x7fff21307fff com.apple.SystemConfiguration (1.20 - 1.20) <BEDC3BFB-D680-3E56-9A3A-2FAB181C52A9> /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
0x7fff21308000 - 0x7fff2133cfff libCRFSuite.dylib (50) <E49A8F87-3F3A-3A0F-853E-65FA6FB33E77> /usr/lib/libCRFSuite.dylib
0x7fff2133d000 - 0x7fff21575fff libmecabra.dylib (929.9) <87ACCBB5-FD09-3044-B6FF-1A94A7129DDF> /usr/lib/libmecabra.dylib
0x7fff21576000 - 0x7fff218d3fff com.apple.Foundation (6.9 - 1775.118.101) <5B112EDB-35C1-31A7-BFDA-E185D1B49D93> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x7fff218d4000 - 0x7fff219bcfff com.apple.LanguageModeling (1.0 - 247.3) <81DEF845-C1A0-3BD0-9820-D1C308AFBE09> /System/Library/PrivateFrameworks/LanguageModeling.framework/Versions/A/LanguageModeling
0x7fff219bd000 - 0x7fff21af3fff com.apple.CoreDisplay (236.4 - 236.4) <C1F98CC6-5C02-372D-BFC8-420DEF159C9D> /System/Library/Frameworks/CoreDisplay.framework/Versions/A/CoreDisplay
0x7fff21af4000 - 0x7fff21d64fff com.apple.audio.AudioToolboxCore (1.0 - 1180.90) <EB4DE2B5-7947-3422-8151-9E1BDA2B3183> /System/Library/PrivateFrameworks/AudioToolboxCore.framework/Versions/A/AudioToolboxCore
0x7fff21d65000 - 0x7fff21f49fff com.apple.CoreText (677.4.0.4 - 677.4.0.4) <F65330BD-9D48-3DE5-9E6B-1232B5BDB656> /System/Library/Frameworks/CoreText.framework/Versions/A/CoreText
0x7fff21f4a000 - 0x7fff225dafff com.apple.audio.CoreAudio (5.0 - 5.0) <68667A4E-B4BC-3DF4-9D34-1E3ECECF7E0F> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
0x7fff225db000 - 0x7fff2292ffff com.apple.security (7.0 - 59754.100.106) <E9261CB0-E729-3F58-98B7-172F243D4427> /System/Library/Frameworks/Security.framework/Versions/A/Security
0x7fff22930000 - 0x7fff22b8ffff libicucore.A.dylib (66112) <478D57C3-FFF8-35E1-A64F-8490A616AB37> /usr/lib/libicucore.A.dylib
0x7fff22b90000 - 0x7fff22b99fff libsystem_darwin.dylib (1439.100.3) <28AB0CBC-61F6-3A01-BCE2-A53DA1AECB0F> /usr/lib/system/libsystem_darwin.dylib
0x7fff22b9a000 - 0x7fff22e85fff com.apple.CoreServices.CarbonCore (1307.2 - 1307.2) <C43BE82A-9E75-39C3-807F-2E87B97B7A78> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x7fff22e86000 - 0x7fff22ec4fff com.apple.CoreServicesInternal (476.1 - 476.1) <65BD8E8C-2F23-3790-B9CB-C04671BE34EE> /System/Library/PrivateFrameworks/CoreServicesInternal.framework/Versions/A/CoreServicesInternal
0x7fff22ec5000 - 0x7fff22efffff com.apple.CSStore (1122.33 - 1122.33) <209D2E9A-FC95-3E51-A0DC-4F32C21B2266> /System/Library/PrivateFrameworks/CoreServicesStore.framework/Versions/A/CoreServicesStore
0x7fff22f00000 - 0x7fff22faefff com.apple.framework.IOKit (2.0.2 - 1845.100.19) <99034CC2-EC1B-38C0-A8DE-CE37672DF139> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x7fff22faf000 - 0x7fff22fbafff libsystem_notify.dylib (279.40.4) <1AA89769-E07F-37CD-BBCF-6DBD345862EB> /usr/lib/system/libsystem_notify.dylib
0x7fff22fbb000 - 0x7fff23008fff libsandbox.1.dylib (1441.101.1) <EC86BFE6-4909-356F-BBEF-DDB1C886D38E> /usr/lib/libsandbox.1.dylib
0x7fff23009000 - 0x7fff23d50fff com.apple.AppKit (6.9 - 2022.44.151) <10AFBC3A-E9A4-3E62-B9F5-97DF579B7A84> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x7fff23d51000 - 0x7fff23f9ffff com.apple.UIFoundation (1.0 - 728.6) <C815FD3F-C0F0-31F6-B60D-C544D807384F> /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff23fa0000 - 0x7fff23fb2fff com.apple.UniformTypeIdentifiers (636.9 - 636.9) <5F110054-A401-34EA-B789-F62B6B152DC4> /System/Library/Frameworks/UniformTypeIdentifiers.framework/Versions/A/UniformTypeIdentifiers
0x7fff23fb3000 - 0x7fff2413dfff com.apple.desktopservices (1.19 - 1346.4.7) <A3CAC396-18DC-3B13-9505-54BE001014CE> /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
0x7fff2441d000 - 0x7fff24a9cfff libnetwork.dylib (2288.100.111) <8D567D13-AE70-34BF-834D-9A65C702A8EA> /usr/lib/libnetwork.dylib
0x7fff24a9d000 - 0x7fff24f3bfff com.apple.CFNetwork (1237 - 1237) <347078F9-34AC-3AD5-AA02-B7E5E1D11FB6> /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
0x7fff24f3c000 - 0x7fff24f4afff libsystem_networkextension.dylib (1295.101.1) <33F45B5A-D346-3E7F-AB34-DFC4387E5A3C> /usr/lib/system/libsystem_networkextension.dylib
0x7fff24f4b000 - 0x7fff24f4bfff libenergytrace.dylib (22.100.1) <C6283CA4-26A1-352B-B678-C81D0E5E02D6> /usr/lib/libenergytrace.dylib
0x7fff24f4c000 - 0x7fff24fa8fff libMobileGestalt.dylib (978.100.37) <1B957D3E-C0F7-36AF-98E4-8897F8633BEA> /usr/lib/libMobileGestalt.dylib
0x7fff24fa9000 - 0x7fff24fbffff libsystem_asl.dylib (385) <4D4E0D4F-8B40-3ACC-85E1-16375966D6CC> /usr/lib/system/libsystem_asl.dylib
0x7fff24fc0000 - 0x7fff24fd7fff com.apple.TCC (1.0 - 1) <10E022E6-5939-32DF-80E7-11BEA294F987> /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
0x7fff24fd8000 - 0x7fff2533bfff com.apple.SkyLight (1.600.0 - 585) <5DB42D5D-CF51-3433-96E6-B2987E0C33C8> /System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight
0x7fff2533c000 - 0x7fff259c5fff com.apple.CoreGraphics (2.0 - 1463.14.2) <E16063AD-03D6-3DC7-A1D4-7103D3721A5A> /System/Library/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x7fff259c6000 - 0x7fff25abcfff com.apple.ColorSync (4.13.0 - 3473.4.3) <69831124-C7EE-3E6E-AC2E-6DCF8A96DB02> /System/Library/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x7fff25abd000 - 0x7fff25b18fff com.apple.HIServices (1.22 - 715) <7F4A58B2-2A3A-321D-BD82-536D0E37A759> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
0x7fff25ebf000 - 0x7fff262defff com.apple.CoreData (120 - 1048) <E44CC602-AE8E-3AC0-A3D4-37E9A5AA949F> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
0x7fff262df000 - 0x7fff262f4fff com.apple.ProtocolBuffer (1 - 285.24.10.20.1) <B83422A6-FA4A-3E24-891F-15851A8D8265> /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
0x7fff262f5000 - 0x7fff264a8fff libsqlite3.dylib (321.3) <39129A81-0E78-3130-85AD-5FA0BFBCC6FA> /usr/lib/libsqlite3.dylib
0x7fff264a9000 - 0x7fff26525fff com.apple.Accounts (113 - 113) <928FC136-F5E1-3865-8384-AB5B7A626C7C> /System/Library/Frameworks/Accounts.framework/Versions/A/Accounts
0x7fff26526000 - 0x7fff2653dfff com.apple.commonutilities (8.0 - 900) <951F55FB-F13F-30E6-AB97-1CEEBE0E78DE> /System/Library/PrivateFrameworks/CommonUtilities.framework/Versions/A/CommonUtilities
0x7fff2653e000 - 0x7fff265bdfff com.apple.BaseBoard (526 - 526) <E88C7B2A-5372-3E8C-B719-AAC35B0F4E91> /System/Library/PrivateFrameworks/BaseBoard.framework/Versions/A/BaseBoard
0x7fff265be000 - 0x7fff26606fff com.apple.RunningBoardServices (1.0 - 505.100.7.0.1) <2E2672F5-C9F1-36E4-B3BA-D3561D7D8BEC> /System/Library/PrivateFrameworks/RunningBoardServices.framework/Versions/A/RunningBoardServices
0x7fff26607000 - 0x7fff2667bfff com.apple.AE (918.4 - 918.4) <5377134F-CCA8-3610-8888-8598115A8E8F> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
0x7fff2667c000 - 0x7fff26682fff libdns_services.dylib (1310.100.10) <CCC9994C-9A07-3740-98AE-908617A67CA5> /usr/lib/libdns_services.dylib
0x7fff26683000 - 0x7fff2668afff libsystem_symptoms.dylib (1431.100.22) <226C631F-5380-395A-AA20-D686AEA05B9B> /usr/lib/system/libsystem_symptoms.dylib
0x7fff2668b000 - 0x7fff2680ffff com.apple.Network (1.0 - 1) <E70D5387-9843-34AB-B8C4-F468EB7EB1EF> /System/Library/Frameworks/Network.framework/Versions/A/Network
0x7fff26810000 - 0x7fff2683ffff com.apple.analyticsd (1.0 - 1) <356D0732-7AC4-3579-A96E-640FD4C9AB56> /System/Library/PrivateFrameworks/CoreAnalytics.framework/Versions/A/CoreAnalytics
0x7fff26840000 - 0x7fff26842fff
If I zip up the /path/to/installer folder using macOS's own zip utility, the app works fine.
I made a binary comparison between both results and couldn't find obvious differences, except for the .DS_Store file. But I never had issues with .DS_Store before in this sort of scenarios, so I don't believe that's the cause.
Where am I wrong?

Found the issue. shutil.make_archive() does not follow symlinks as of python 3.9.5. So the symlinks are not included in the zips.
This corrupts the lib and executable bundles such as *.framework's.
A workaround I round is to use gztar instead of zip, which preserves the essential symlinks.
shutil.make_archive(app_pkg, 'gztar', '/path/to/installer')

Why my PySimpleGUI crash on Mac OS X 10.15.1, but works fine on Mac OS X 10.13

Crash logs:
Process: Test6 [1858]
Path: /Users/USER/Desktop/*/App-1.1.app/Contents/MacOS/Test6
Identifier: App-1.1
Version: 0
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: Test6 [1858]
User ID: 501
Date/Time: 2019-12-23 18:29:43.866 +0800
OS Version: Mac OS X 10.15.1 (19B88)
Report Version: 12
Bridge OS Version: 3.0 (14Y906)
Anonymous UUID: 9952FE86-6763-6994-E7F6-20DEB896E05E
Sleep/Wake UUID: E4ED98DC-0E7E-4921-BCA0-511DE41E4C5D
Time Awake Since Boot: 28000 seconds
Time Since Wake: 1400 seconds
System Integrity Protection: enabled
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
dyld2 mode
abort() called
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff7064249a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff706ff6cb pthread_kill + 384
2 libsystem_c.dylib 0x00007fff705caa1c abort + 120
3 Python 0x000000010ac1b1ae fatal_error + 547
4 Python 0x000000010ac1a7de Py_InitializeEx + 136
5 App-1.1 0x000000010ab47768 main + 440
6 libdyld.dylib 0x00007fff704f32e5 start + 1
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000114b46dc0 rcx: 0x00007ffee50b9518 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007ffee50b9540 rsp: 0x00007ffee50b9518
r8: 0x0000000000000000 r9: 0x0000000054f023e4 r10: 0x0000000000000000 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000000000000 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff7064249a rfl: 0x0000000000000246 cr2: 0x000000010aea5020
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
0x10ab46000 - 0x10ab47fff +App-1.1 (0) <F8D9BE9C-E118-36FB-A55B-5FE23569915D> /Users/USER/Desktop/*/App-1.1.app/Contents/MacOS/Test6
0x10ab4c000 - 0x10acd3fff +Python (0) <836E2A2F-2279-3E85-B279-61047DAB23C5> /Users/USER/Desktop/*/App-1.1.app/Contents/MacOS/Python
0x114a7d000 - 0x114b0db5f dyld (733.6) <DAFEA246-2F9A-3DCB-A37C-4246D4F92770> /usr/lib/dyld
0x7fff2d695000 - 0x7fff2d6a4ff7 libSimplifiedChineseConverter.dylib (76) <D25428B0-07E7-33DA-8939-5ED3C50D3154> /System/Library/CoreServices/Encodings/libSimplifiedChineseConverter.dylib
0x7fff38fdf000 - 0x7fff3945efe7 com.apple.CoreFoundation (6.9 - 1673.126) <15D61616-B29B-3BDB-8624-4B84A4956485> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff6ce76000 - 0x7fff6ce78fff libDiagnosticMessagesClient.dylib (112) <83F42398-DB41-3BB2-B8A1-10D78C4B5778> /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff6d33e000 - 0x7fff6d33fff3 libSystem.B.dylib (1281) <1DD1BCD2-2C85-3B81-8CAF-224FB042F441> /usr/lib/libSystem.B.dylib
0x7fff6d61c000 - 0x7fff6d66ffff libc++.1.dylib (800.7) <1D42387D-206A-3F06-9B5F-705B83EAC295> /usr/lib/libc++.1.dylib
0x7fff6d670000 - 0x7fff6d684fff libc++abi.dylib (800.7) <D89ABFBF-3754-35AB-BAEE-FBF14857F79B> /usr/lib/libc++abi.dylib
0x7fff6e0e5000 - 0x7fff6e0e7ff7 libfakelink.dylib (149) <528A0ABE-B583-3DA1-8E5B-9CA7E89303DE> /usr/lib/libfakelink.dylib
0x7fff6e1f7000 - 0x7fff6e44fff7 libicucore.A.dylib (64243.0.1) <4CBF52D7-7235-34C8-9FF1-8657076B604F> /usr/lib/libicucore.A.dylib
0x7fff6f17e000 - 0x7fff6f1afff6 libobjc.A.dylib (781) <D866A31E-5CB1-3327-8D22-C4F83C9225D0> /usr/lib/libobjc.A.dylib
0x7fff6f856000 - 0x7fff6f868fff libz.1.dylib (76) <3EC7A143-AF2D-35EE-9C08-542B2907E3D2> /usr/lib/libz.1.dylib
0x7fff702ce000 - 0x7fff702d3ff7 libcache.dylib (83) <74F6459D-3606-3ADB-9808-F6B0FE70062D> /usr/lib/system/libcache.dylib
0x7fff702d4000 - 0x7fff702dfff7 libcommonCrypto.dylib (60165) <1333752F-5117-3E86-803A-06E166D80C8C> /usr/lib/system/libcommonCrypto.dylib
0x7fff702e0000 - 0x7fff702e7fff libcompiler_rt.dylib (101.2) <0437EBEF-8191-3912-A365-D6BB75C7A810> /usr/lib/system/libcompiler_rt.dylib
0x7fff702e8000 - 0x7fff702f1fff libcopyfile.dylib (166.40.1) <7FAF372E-BAD5-30E6-A8F2-A3D06B91DC80> /usr/lib/system/libcopyfile.dylib
0x7fff702f2000 - 0x7fff70389fef libcorecrypto.dylib (866.40.8) <AE25C9EE-5D63-3E49-B3AA-D482D35C085A> /usr/lib/system/libcorecrypto.dylib
0x7fff704a0000 - 0x7fff704e1ff0 libdispatch.dylib (1173.40.5) <1FF421B6-4BF0-3B5F-8F56-5ED3B3EFE06F> /usr/lib/system/libdispatch.dylib
0x7fff704e2000 - 0x7fff70517fff libdyld.dylib (733.6) <2FA4B359-624B-337C-9207-CDCF841C2E52> /usr/lib/system/libdyld.dylib
0x7fff70518000 - 0x7fff70518ffb libkeymgr.dylib (30) <7EEF9246-30B4-34DD-8AD6-79679D1A7784> /usr/lib/system/libkeymgr.dylib
0x7fff70526000 - 0x7fff70526ff7 liblaunch.dylib (1738.40.10) <CC02D5B3-A95D-3B16-8EE5-D62521CFE899> /usr/lib/system/liblaunch.dylib
0x7fff70527000 - 0x7fff7052cff7 libmacho.dylib (949.0.1) <6C3E49B2-594D-3B9D-82DB-C4ABEB9788AB> /usr/lib/system/libmacho.dylib
0x7fff7052d000 - 0x7fff7052fff3 libquarantine.dylib (110.40.3) <A1BCAA32-A194-3DBE-9930-8F49A4AEF284> /usr/lib/system/libquarantine.dylib
0x7fff70530000 - 0x7fff70531ff7 libremovefile.dylib (48) <DD7AE862-F179-3C07-A4FC-5775DDD4D3E6> /usr/lib/system/libremovefile.dylib
0x7fff70532000 - 0x7fff70549fff libsystem_asl.dylib (377.40.1) <ECE44856-D279-3B5D-A0AA-8BE421D200C4> /usr/lib/system/libsystem_asl.dylib
0x7fff7054a000 - 0x7fff7054afff libsystem_blocks.dylib (74) <DC521115-905A-3A0D-9337-C55FACCEA85F> /usr/lib/system/libsystem_blocks.dylib
0x7fff7054b000 - 0x7fff705d2ff7 libsystem_c.dylib (1353.41.1) <5AD50779-955E-3F56-BCB9-1E14833B3455> /usr/lib/system/libsystem_c.dylib
0x7fff705d3000 - 0x7fff705d6fff libsystem_configuration.dylib (1061.40.2) <7A2329E0-3C84-3DB7-BC32-E7796C50D621> /usr/lib/system/libsystem_configuration.dylib
0x7fff705d7000 - 0x7fff705daff7 libsystem_coreservices.dylib (114) <DF341577-A307-3722-BB24-D4AACEAB19B3> /usr/lib/system/libsystem_coreservices.dylib
0x7fff705db000 - 0x7fff705e2fff libsystem_darwin.dylib (1353.41.1) <E862B5B1-A367-39CA-8319-B2F9DFADF606> /usr/lib/system/libsystem_darwin.dylib
0x7fff705e3000 - 0x7fff705eaffb libsystem_dnssd.dylib (1096.40.7) <2A9C6F3E-427B-332E-BDD3-D4651306F3DE> /usr/lib/system/libsystem_dnssd.dylib
0x7fff705eb000 - 0x7fff705ecffb libsystem_featureflags.dylib (17) <B94C0052-B75A-3169-80AA-5F480588AF6E> /usr/lib/system/libsystem_featureflags.dylib
0x7fff705ed000 - 0x7fff7063aff7 libsystem_info.dylib (538) <18CC56C5-5325-3375-BF99-FAE7F4F19DDD> /usr/lib/system/libsystem_info.dylib
0x7fff7063b000 - 0x7fff70667ff7 libsystem_kernel.dylib (6153.41.3) <18918E9C-45BC-3D5A-A6B6-3DBC60EEE2E1> /usr/lib/system/libsystem_kernel.dylib
0x7fff70668000 - 0x7fff706afff7 libsystem_m.dylib (3178) <636A1A1C-7AFC-3E82-B86B-0173912A3437> /usr/lib/system/libsystem_m.dylib
0x7fff706b0000 - 0x7fff706d7ff7 libsystem_malloc.dylib (283.40.1) <F82A587B-44A2-3699-A218-9D3ECEE23D5A> /usr/lib/system/libsystem_malloc.dylib
0x7fff706d8000 - 0x7fff706e5ff3 libsystem_networkextension.dylib (1095.40.22) <7F206A43-A941-3BAB-AE3A-16169F2FE6AB> /usr/lib/system/libsystem_networkextension.dylib
0x7fff706e6000 - 0x7fff706effff libsystem_notify.dylib (241) <C95CC58E-35E7-3828-AA2A-6EED73C12DE5> /usr/lib/system/libsystem_notify.dylib
0x7fff706f0000 - 0x7fff706f9fe7 libsystem_platform.dylib (220) <0CCDD81F-0891-3400-8A97-6CAC3BBBE2F9> /usr/lib/system/libsystem_platform.dylib
0x7fff706fa000 - 0x7fff70704ff7 libsystem_pthread.dylib (416.40.3) <53C65598-9E9E-36FF-BDC2-74F228E58C5C> /usr/lib/system/libsystem_pthread.dylib
0x7fff70705000 - 0x7fff70709ffb libsystem_sandbox.dylib (1217.41.1) <2183D15E-2CFD-3160-80CE-A948F0529005> /usr/lib/system/libsystem_sandbox.dylib
0x7fff7070a000 - 0x7fff7070cfff libsystem_secinit.dylib (62.40.2) <D2782294-ACDC-30FF-A794-B4C1B324526B> /usr/lib/system/libsystem_secinit.dylib
0x7fff7070d000 - 0x7fff70714ffb libsystem_symptoms.dylib (1238.40.4) <A44E4405-E22E-32E9-83DE-8C7A82401DA0> /usr/lib/system/libsystem_symptoms.dylib
0x7fff70715000 - 0x7fff7072bff2 libsystem_trace.dylib (1147.40.13) <376CC435-E656-37D9-A5FF-C49B6E4525E2> /usr/lib/system/libsystem_trace.dylib
0x7fff7072d000 - 0x7fff70732ffb libunwind.dylib (35.4) <44448F1F-08E5-3425-ADBA-C38A9E8F90C7> /usr/lib/system/libunwind.dylib
0x7fff70733000 - 0x7fff70767ff6 libxpc.dylib (1738.40.10) <99CC9436-D653-3762-ADBB-9054EBD1BA2B> /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 16785
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=366.5M resident=0K(0%) swapped_out_or_unallocated=366.5M(100%)
Writable regions: Total=557.6M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=557.6M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Kernel Alloc Once 8K 1
MALLOC 164.3M 19
MALLOC guard page 16K 4
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
STACK GUARD 56.0M 1
Stack 8192K 1
VM_ALLOCATE 1024K 4
__DATA 2581K 49
__DATA_CONST 20K 1
__LINKEDIT 353.3M 4
__OBJC_RO 32.0M 1
__OBJC_RW 1780K 2
__TEXT 13.2M 47
__UNICODE 564K 1
shared memory 8K 2
=========== ======= =======
TOTAL 1.0G 138
TOTAL, minus reserved VM space 632.6M 138
Model: MacBookPro14,2, BootROM 202.0.0.0.0, 2 processors, Dual-Core Intel Core i5, 3.1 GHz, 8 GB, SMC 2.44f2
Graphics: kHW_IntelIrisGraphics650Item, Intel Iris Plus Graphics 650, spdisplays_builtin
Memory Module: BANK 0/DIMM0, 4 GB, LPDDR3, 2133 MHz, 0x80CE, 0x4B3445364533303445422D45474347202020
Memory Module: BANK 1/DIMM0, 4 GB, LPDDR3, 2133 MHz, 0x80CE, 0x4B3445364533303445422D45474347202020
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x171), Broadcom BCM43xx 1.0 (7.77.106.3 AirPortDriverBrcmNIC-1435.3)
Bluetooth: Version 7.0.1f1, 3 services, 18 devices, 1 incoming serial ports
Network Service: Wi-Fi, AirPort, en0
USB Device: USB 3.0 Bus
USB Device: Apple T1 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.3
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.3

osx 10.10.5 Python 2.7 "Fatal Python error: PyThreadState_Get: no current thread Abort trap: 6" error

I am using homebrew python 2.7 and I installed nupic
$ pip install nupic
Then I get error when i try to import nupic
$ python
Python 2.7.11 (default, Jan 22 2016, 08:28:37)
[GCC 4.2.1 Compatible Apple LLVM 7.0.2 (clang-700.1.81)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> from nupic.bindings.algorithms import SpatialPooler as SP
Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6
$
After I get the error:
Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6
Python exits and it asks if i want to report it to apple.
Here is the report.
Process: Python [72449]
Path: /usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 2.7.11 (2.7.11)
Code Type: X86-64 (Native)
Parent Process: bash [93469]
Responsible: Terminal [93466]
User ID: 501
Date/Time: 2016-02-06 17:30:50.442 +0900
OS Version: Mac OS X 10.10.5 (14F1021)
Report Version: 11
Anonymous UUID: 855D5299-1DD9-879D-F358-9483D5CA0033
Sleep/Wake UUID: A2948A3A-B3AB-4F3C-8214-250AAC8AB13F
Time Awake Since Boot: 75000 seconds
Time Since Wake: 7800 seconds
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Application Specific Information:
abort() called
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff85532286 __pthread_kill + 10
1 libsystem_c.dylib 0x00007fff932e79b3 abort + 129
2 org.python.python 0x000000010a8fa2a3 Py_FatalError + 49
3 org.python.python 0x000000010a8f9785 PyThreadState_Get + 28
4 org.python.python 0x000000010a8f6522 Py_InitModule4_64 + 62
5 _algorithms.so 0x000000010a0d7c7c init_algorithms + 796
6 org.python.python 0x0000000108fdb98b _PyImport_LoadDynamicModule + 140
7 org.python.python 0x0000000108fdb422 imp_load_module + 243
8 org.python.python 0x0000000108fc5be5 PyEval_EvalFrameEx + 26858
9 org.python.python 0x0000000108fc9745 fast_function + 264
10 org.python.python 0x0000000108fc5b0b PyEval_EvalFrameEx + 26640
11 org.python.python 0x0000000108fbf109 PyEval_EvalCodeEx + 1583
12 org.python.python 0x0000000108fbead4 PyEval_EvalCode + 54
13 org.python.python 0x0000000108fd7f0f PyImport_ExecCodeModuleEx + 241
14 org.python.python 0x0000000108fdac27 load_source_module + 1089
15 org.python.python 0x0000000108fda689 import_submodule + 267
16 org.python.python 0x0000000108fda24f load_next + 284
17 org.python.python 0x0000000108fd946b PyImport_ImportModuleLevel + 1195
18 org.python.python 0x0000000108fba70a builtin___import__ + 135
19 org.python.python 0x0000000108f45ef0 PyObject_Call + 99
20 org.python.python 0x0000000108fc9087 PyEval_CallObjectWithKeywords + 165
21 org.python.python 0x0000000108fc438a PyEval_EvalFrameEx + 20623
22 org.python.python 0x0000000108fbf109 PyEval_EvalCodeEx + 1583
23 org.python.python 0x0000000108fbead4 PyEval_EvalCode + 54
24 org.python.python 0x0000000108fe2eb9 run_mod + 53
25 org.python.python 0x0000000108fe2f5c PyRun_FileExFlags + 133
26 org.python.python 0x0000000108fe2aab PyRun_SimpleFileExFlags + 698
27 org.python.python 0x0000000108ff445d Py_Main + 3137
28 libdyld.dylib 0x00007fff9331a5c9 start + 1
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx: 0x00007fff56ccd9f8 rdx: 0x0000000000000000
rdi: 0x0000000000000713 rsi: 0x0000000000000006 rbp: 0x00007fff56ccda20 rsp: 0x00007fff56ccd9f8
r8: 0x00007fff56ccda10 r9: 0x00007fff75557300 r10: 0x0000000008000000 r11: 0x0000000000000206
r12: 0x0000000109d92e94 r13: 0x000000010a4a9010 r14: 0x00007fff75557300 r15: 0x000000010906c310
rip: 0x00007fff85532286 rfl: 0x0000000000000206 cr2: 0x00007fff75ea9fd8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff92c13000 - 0x7fff92c1efff libcommonCrypto.dylib (60061.30.1) <E789748D-F9A7-3CFF-B317-90DF348B1E95> /usr/lib/system/libcommonCrypto.dylib
0x7fff9328a000 - 0x7fff93316fe7 libsystem_c.dylib (1044.40.1) <F0635E0F-FE4B-34DB-ACF9-A58C1E9070E9> /usr/lib/system/libsystem_c.dylib
0x7fff93317000 - 0x7fff9331aff7 libdyld.dylib (353.2.3) <CFBBE540-D503-3AFC-B5D6-644F1E69949B> /usr/lib/system/libdyld.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 73166
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=109.5M resident=95.1M(87%) swapped_out_or_unallocated=14.4M(13%)
Writable regions: Total=53.9M written=13.3M(25%) resident=15.8M(29%) swapped_out=0K(0%) unallocated=38.1M(71%)
REGION TYPE VIRTUAL
=========== =======
Kernel Alloc Once 4K
MALLOC 44.8M
MALLOC (admin) 16K
STACK GUARD 56.0M
Stack 8192K
VM_ALLOCATE 16K
__DATA 2940K
__LINKEDIT 75.9M
__TEXT 33.6M
__UNICODE 552K
shared memory 4K
=========== =======
TOTAL 221.8M
Model: MacBookPro12,1, BootROM MBP121.0167.B14, 2 processors, Intel Core i5, 2.7 GHz, 8 GB, SMC 2.28f7
Graphics: Intel Iris Graphics 6100, Intel Iris Graphics 6100, Built-In
Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1867 MHz, 0x80AD, 0x483943434E4E4E424C54414C41522D4E5544
Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1867 MHz, 0x80AD, 0x483943434E4E4E424C54414C41522D4E5544
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x133), Broadcom BCM43xx 1.0 (7.15.166.24.3)
Bluetooth: Version 4.3.6f3 16238, 3 services, 27 devices, 1 incoming serial ports
Network Service: Wi-Fi, AirPort, en0
Serial ATA Device: APPLE SSD SM0256G, 251 GB
USB Device: Internal Memory Card Reader
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 27.1
The problem does not happen if I run the native python installed on my mac. The following works just fine.
$ /usr/bin/python
Python 2.7.10 (default, Jul 14 2015, 19:46:27)
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.39)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> from nupic.bindings.algorithms import SpatialPooler as SP
>>>
Any help would be greatly appreciated.

malloc error when extending Python to call C++ function

I am trying to wrap a C++ function to call from Python.
My C++ code compiles and runs successfully, but when I call it from python I get the following error:
python(6805,0x7fff78401300) malloc: *** mach_vm_map(size=8245930807582093312) failed (error code=3)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
libc++abi.dylib: terminating with uncaught exception of type std::bad_alloc: std::bad_alloc
zsh: abort python
Here is my C++ function, which crawls my filesystem:
const char * crawlDirectory(const string directory)
{
std::vector<std::string> filesVector;
std::vector<std::string> dirsVector;
dirsVector.push_back(directory);
int currDirectoryIndex = 0;
while (currDirectoryIndex < dirsVector.size()) {
GetFilesInDirectory(filesVector, dirsVector, dirsVector[currDirectoryIndex].c_str());
currDirectoryIndex++;
}
std::string filesListString = "";
for (int i=0; i<filesVector.size()-1; i++) {
filesListString += filesVector[i].c_str() + SEPARATOR;
}
//add the last file path without the separator -- faster than a conditional for every iteration
filesListString += filesVector[filesVector.size()-1].c_str();
const char * retString = filesListString.c_str();
return retString;
}
I don't think the problem is in 'GetFilesInDirectory()', but I will post it if necessary.
Here is the extern block, which helps me wrap the function:
extern "C" {
Crawler* Crawler_new(){ return new Crawler(); }
const char * Crawler_crawlDirectory(Crawler* crawler, const string directory){ return(crawler->crawlDirectory(directory)); }
}
Here is the python file that defines the Crawler class:
from ctypes import cdll
from ctypes import *
lib = cdll.LoadLibrary('./libcrawler.so')
lib.Crawler_crawlDirectory.restype = c_char_p
lib.Crawler_crawlDirectory.argtypes = [c_void_p, c_char_p]
lib.Crawler_new.restype = c_void_p
class Crawler(object):
def __init__(self):
self.obj = lib.Crawler_new()
def crawlDirectory(self, path):
return lib.Crawler_crawlDirectory(self.obj, path)
I am positive that my C++ code is being compiled correctly (with g++ as a dylib), because I have tested the wrapper with other functions that return simple things like char*s and integers, and they work correctly.
Here is how I am calling the function from python:
>>> from wrapper import *
>>> c = Crawler()
>>> files = c.crawlDirectory('/Users/whatever/desktop')
Can anyone give insight about solving this issue?
Edit: here is the problem report:
Process: Python [7057]
Path: /System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 2.7.6 (2.7.6)
Code Type: X86-64 (Native)
Parent Process: zsh [390]
Responsible: Terminal [285]
User ID: 501
PlugIn Path: /Users/USER/Documents/*/libcrawler.so
PlugIn Identifier: libcrawler.so
PlugIn Version: ??? (0)
Date/Time: 2014-06-08 16:36:24.623 -0700
OS Version: Mac OS X 10.10 (14A238x)
Report Version: 11
Anonymous UUID: F5B91E6D-C318-117A-A457-522AB46FF6DC
Sleep/Wake UUID: E228A7B4-D89E-4DBF-ABF3-510F4CF0EC3B
Time Awake Since Boot: 29000 seconds
Time Since Wake: 8000 seconds
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Application Specific Information:
abort() called
terminating with uncaught exception of type std::bad_alloc: std::bad_alloc
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff90f5637a __pthread_kill + 10
1 libsystem_c.dylib 0x00007fff88fcc5ff abort + 129
2 libc++abi.dylib 0x00007fff8b95fb31 abort_message + 257
3 libc++abi.dylib 0x00007fff8b9879b9 default_terminate_handler() + 243
4 libobjc.A.dylib 0x00007fff8849c522 _objc_terminate() + 124
5 libc++abi.dylib 0x00007fff8b9850a1 std::__terminate(void (*)()) + 8
6 libc++abi.dylib 0x00007fff8b984b2c __cxa_throw + 121
7 libc++abi.dylib 0x00007fff8b98527a operator new(unsigned long) + 90
8 libc++.1.dylib 0x00007fff94fd1f05 std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::__init(char const*, unsigned long) + 59
9 libcrawler.so 0x000000010747cce0 Crawler_crawlDirectory + 32
10 libffi.dylib 0x00007fff90eaaf44 ffi_call_unix64 + 76
11 libffi.dylib 0x00007fff90eab781 ffi_call + 853
12 _ctypes.so 0x0000000106d3c76e _ctypes_callproc + 874
13 _ctypes.so 0x0000000106d36bb9 PyCData_set + 2386
14 org.python.python 0x00000001069f03b8 PyObject_Call + 99
15 org.python.python 0x0000000106a6cc23 PyEval_EvalFrameEx + 11365
16 org.python.python 0x0000000106a7062a 0x1069e6000 + 566826
17 org.python.python 0x0000000106a6d406 PyEval_EvalFrameEx + 13384
18 org.python.python 0x0000000106a69d8a PyEval_EvalCodeEx + 1413
19 org.python.python 0x0000000106a697ff PyEval_EvalCode + 54
20 org.python.python 0x0000000106a897d1 0x1069e6000 + 669649
21 org.python.python 0x0000000106a895ed PyRun_InteractiveOneFlags + 353
22 org.python.python 0x0000000106a890fc PyRun_InteractiveLoopFlags + 192
23 org.python.python 0x0000000106a88fa6 PyRun_AnyFileExFlags + 60
24 org.python.python 0x0000000106a9ab0f Py_Main + 3051
25 libdyld.dylib 0x00007fff8a5575c9 start + 1
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx: 0x00007fff59221af8 rdx: 0x0000000000000000
rdi: 0x0000000000000d0f rsi: 0x0000000000000006 rbp: 0x00007fff59221b20 rsp: 0x00007fff59221af8
r8: 0x0000000000000000 r9: 0x00007fff88ff6e80 r10: 0x0000000008000000 r11: 0x0000000000000206
r12: 0x00007fff59221c80 r13: 0x00007fff592222e0 r14: 0x00007fff78401300 r15: 0x00007fff59221b60
rip: 0x00007fff90f5637a rfl: 0x0000000000000206 cr2: 0x00007fff785f2fc8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff8ea25000 - 0x7fff8ea25ff7 libkeymgr.dylib (28) <552CCAE4-E242-3005-AB85-24C6E533D6E9> /usr/lib/system/libkeymgr.dylib
0x7fff8f039000 - 0x7fff8f03bff7 libsystem_sandbox.dylib (344) <69ACEB2A-8DC9-3B89-8ECF-667AD6B485FC> /usr/lib/system/libsystem_sandbox.dylib
0x7fff8f6af000 - 0x7fff8f6c4ff7 libsystem_asl.dylib (260) <3398113B-8429-3D3E-B728-E44205BAD4E2> /usr/lib/system/libsystem_asl.dylib
0x7fff8fa82000 - 0x7fff8fa89ff7 libcopyfile.dylib (115) <802774AD-A71F-3A46-A7A9-810F8B8DA205> /usr/lib/system/libcopyfile.dylib
0x7fff8fbae000 - 0x7fff8fc73fef libvMisc.dylib (497) <658E4CC2-DA85-30A1-978E-5386DAA361E3> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x7fff902c1000 - 0x7fff902d4ff7 libLinearAlgebra.dylib (1119) <F6A6D050-E257-3427-A05D-A46D2F4B57AB> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLinearAlgebra.dylib
0x7fff90eaa000 - 0x7fff90eabfff libffi.dylib (18.1) <BE2846BF-C1BA-3136-903F-A914CDBC7328> /usr/lib/libffi.dylib
0x7fff90f40000 - 0x7fff90f5dfff libsystem_kernel.dylib (2738.0.0.0.5) <07664A85-DF08-3113-8817-B726F7774B14> /usr/lib/system/libsystem_kernel.dylib
0x7fff9106e000 - 0x7fff910e3fff libcorecrypto.dylib (211.0.0.0.1) <6D9E2007-EF3B-3665-AA15-A356090540B6> /usr/lib/system/libcorecrypto.dylib
0x7fff9162d000 - 0x7fff91632fff libsystem_networkextension.dylib (112) <4C3B20D2-18FB-35BE-A695-8E56BAC1D3A8> /usr/lib/system/libsystem_networkextension.dylib
0x7fff91638000 - 0x7fff91638fff com.apple.Accelerate.vecLib (3.10 - vecLib 3.10) <1AEEC774-2F65-3763-B52E-C04C0DD05F63> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
0x7fff918e2000 - 0x7fff918e7ff7 libunwind.dylib (35.3) <4BD86D0A-A203-3FEB-BFED-5668B180AB49> /usr/lib/system/libunwind.dylib
0x7fff93093000 - 0x7fff93099fff libsystem_trace.dylib (47.0.0.0.2) <3496EA08-6D61-37F0-A557-8AD734F0480E> /usr/lib/system/libsystem_trace.dylib
0x7fff93945000 - 0x7fff93946fff libunc.dylib (28) <43600429-64D7-3578-ACCE-7642190EE835> /usr/lib/system/libunc.dylib
0x7fff93947000 - 0x7fff9394ffff libsystem_platform.dylib (61) <90DD0380-D3ED-346A-B4A8-1F1D11D42032> /usr/lib/system/libsystem_platform.dylib
0x7fff93952000 - 0x7fff9395bffb libsystem_notify.dylib (129) <7F8F5086-AD7A-3C80-BBCB-AD54EA44376B> /usr/lib/system/libsystem_notify.dylib
0x7fff94168000 - 0x7fff945bafef com.apple.vImage (8.0 - 8.0) <ACD86E88-A9F7-3E95-BA51-4208E2D879B8> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x7fff9469e000 - 0x7fff946a0ff7 libquarantine.dylib (73) <EE50CAE5-1596-3344-8760-579EFAF176F2> /usr/lib/system/libquarantine.dylib
0x7fff94f92000 - 0x7fff94fe6fff libc++.1.dylib (120) <C6EFD658-B948-36F4-905D-A9780797D0D1> /usr/lib/libc++.1.dylib
0x7fff9556f000 - 0x7fff95580fff libsystem_coretls.dylib (29) <B95FEAC8-6C16-382A-BE5C-5B34F6A4E8FD> /usr/lib/system/libsystem_coretls.dylib
0x7fff9574c000 - 0x7fff958d9fff libBLAS.dylib (1119) <93F54197-FEA7-31A1-B960-CCD78F87702E> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x7fff95ce4000 - 0x7fff95ce4ff7 liblaunch.dylib (496.0.0.0.4) <25D0EE80-85D2-379D-BF76-09B417C0FD19> /usr/lib/system/liblaunch.dylib
0x7fff95d83000 - 0x7fff95d88ff7 libmacho.dylib (861) <BF14A7C8-2711-38E7-B05E-6AE66D5323CA> /usr/lib/system/libmacho.dylib
0x7fff961f6000 - 0x7fff96207ff7 libz.1.dylib (55) <68DE8C8A-0320-3269-AABF-D26D73F50001> /usr/lib/libz.1.dylib
0x7fff96564000 - 0x7fff96565fff libDiagnosticMessagesClient.dylib (100) <9F8277CE-07E0-39CD-A2EE-581D02EBE58B> /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff96672000 - 0x7fff9669aff3 libsystem_info.dylib (456) <E997A3CF-82FE-36F5-B246-3E73C98BEE02> /usr/lib/system/libsystem_info.dylib
0x7fff96a65000 - 0x7fff96a66fff libsystem_secinit.dylib (16) <F2CA96CB-D627-3407-830C-E2E1D48E457B> /usr/lib/system/libsystem_secinit.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 203216
thread_create: 0
thread_set_state: 493
VM Region Summary:
ReadOnly portion of Libraries: Total=100.7M resident=15.8M(16%) swapped_out_or_unallocated=85.0M(84%)
Writable regions: Total=31.9M written=8868K(27%) resident=11.9M(37%) swapped_out=0K(0%) unallocated=20.0M(63%)
REGION TYPE VIRTUAL
=========== =======
Kernel Alloc Once 4K
MALLOC 23.3M
MALLOC (admin) 16K
STACK GUARD 56.0M
Stack 8192K
VM_ALLOCATE 16K
__DATA 2080K
__LINKEDIT 74.3M
__TEXT 26.4M
__UNICODE 544K
shared memory 4K
=========== =======
TOTAL 190.7M
Model: MacBookPro5,4, BootROM MBP53.00AC.B03, 2 processors, Intel Core 2 Duo, 2.53 GHz, 8 GB, SMC 1.49f2
Graphics: NVIDIA GeForce 9400M, NVIDIA GeForce 9400M, PCI, 256 MB
Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1067 MHz, 0x857F, 0x483634353155363446373036364700000000
Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1067 MHz, 0x857F, 0x483634353155363446373036364700000000
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x8D), Broadcom BCM43xx 1.0 (5.106.98.100.24)
Bluetooth: Version 4.3.0d49 14130, 3 services, 24 devices, 1 incoming serial ports
Network Service: AirPort, AirPort, en1
Serial ATA Device: Samsung SSD 840 EVO 750GB, 750.16 GB
Serial ATA Device: MATSHITADVD-R UJ-868
USB Device: Built-in iSight
USB Device: Internal Memory Card Reader
USB Device: Apple Internal Keyboard / Trackpad
USB Device: IR Receiver
USB Device: BRCM2046 Hub
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus:
Edit: Stack trace from gdb:
http://pastebin.com/ncx5fTRg
(reached SO question size limit).
Thanks.