I got the following error while building a docker image by "docker-compose build".
ERROR: Couldn't connect to Docker daemon at http://127.0.0.1:2375 - is it running?
If it's at a non-standard location, specify the URL with the DOCKER_HOST environment variable.
Even if I try with "sudo", I got this:
Building web
Step 1/8 : FROM python:3.8.3-alpine
---> 8ecf5a48c789
Step 2/8 : WORKDIR /usr/src/app
---> Using cache
---> 87bb0088a0ba
Step 3/8 : ENV PYTHONDONTWRITEBYTECODE 1
---> Using cache
---> 4f1a6ddf9e1f
Step 4/8 : ENV PYTHONUNBUFFERED 1
---> Using cache
---> 5d22b6b7a0f5
Step 5/8 : RUN pip install --upgrade pip
---> Using cache
---> 169ee831f728
Step 6/8 : COPY ./requirements.txt .
---> Using cache
---> 4b4351e31632
Step 7/8 : RUN pip install -r requirements.txt
---> Running in a4dae2fe3761
Collecting asgiref==3.2.10
Downloading asgiref-3.2.10-py3-none-any.whl (19 kB)
Collecting cffi==1.14.3
Downloading cffi-1.14.3.tar.gz (470 kB)
Collecting cryptography==3.2.1
Downloading cryptography-3.2.1.tar.gz (540 kB)
Installing build dependencies: started
Installing build dependencies: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python /usr/local/lib/python3.8/site-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-p3ocmpkd/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'setuptools>=40.6.0' wheel 'cffi>=1.8,!=1.11.3; platform_python_implementation != '"'"'PyPy'"'"''
cwd: None
Complete output (128 lines):
Collecting setuptools>=40.6.0
Downloading setuptools-50.3.2-py3-none-any.whl (785 kB)
Collecting wheel
Downloading wheel-0.35.1-py2.py3-none-any.whl (33 kB)
Collecting cffi!=1.11.3,>=1.8
Using cached cffi-1.14.3.tar.gz (470 kB)
Collecting pycparser
Downloading pycparser-2.20-py2.py3-none-any.whl (112 kB)
Building wheels for collected packages: cffi
Building wheel for cffi (setup.py): started
Building wheel for cffi (setup.py): finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-_eoslhz1/cffi/setup.py'"'"'; __file__='"'"'/tmp/pip-install-_eoslhz1/cffi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-99ngzpxw
cwd: /tmp/pip-install-_eoslhz1/cffi/
Complete output (50 lines):
unable to execute 'gcc': No such file or directory
unable to execute 'gcc': No such file or directory
No working compiler found, or bogus compiler options passed to
the compiler from Python's standard "distutils" module. See
the error messages above. Likely, the problem is not related
to CFFI but generic to the setup.py of any Python package that
tries to compile C code. (Hints: on OS/X 10.8, for errors about
-mno-fused-madd see http://stackoverflow.com/questions/22313407/
Otherwise, see https://wiki.python.org/moin/CompLangPython or
the IRC channel #python on irc.freenode.net.)
Trying to continue anyway. If you are trying to install CFFI from
a build done in a different context, you can ignore this warning.
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/cffi
copying cffi/api.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/verifier.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/recompiler.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/vengine_gen.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/model.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/__init__.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/error.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/ffiplatform.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/cparser.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/backend_ctypes.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/cffi_opcode.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/commontypes.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/pkgconfig.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/setuptools_ext.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/lock.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/vengine_cpy.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_cffi_include.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/parse_c_type.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_embedding.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_cffi_errors.h -> build/lib.linux-x86_64-3.8/cffi
warning: build_py: byte-compiling is disabled, skipping.
running build_ext
building '_cffi_backend' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/c
gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -DTHREAD_STACK_SIZE=0x100000 -fPIC -I/usr/include/ffi -I/usr/include/libffi -I/usr/local/include/python3.8 -c c/_cffi_backend.c -o build/temp.linux-x86_64-3.8/c/_cffi_backend.o
unable to execute 'gcc': No such file or directory
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for cffi
Running setup.py clean for cffi
Failed to build cffi
Installing collected packages: setuptools, wheel, pycparser, cffi
Running setup.py install for cffi: started
Running setup.py install for cffi: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-_eoslhz1/cffi/setup.py'"'"'; __file__='"'"'/tmp/pip-install-_eoslhz1/cffi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-pah2aui6/install-record.txt --single-version-externally-managed --prefix /tmp/pip-build-env-p3ocmpkd/overlay --compile --install-headers /tmp/pip-build-env-p3ocmpkd/overlay/include/python3.8/cffi
cwd: /tmp/pip-install-_eoslhz1/cffi/
Complete output (50 lines):
unable to execute 'gcc': No such file or directory
unable to execute 'gcc': No such file or directory
No working compiler found, or bogus compiler options passed to
the compiler from Python's standard "distutils" module. See
the error messages above. Likely, the problem is not related
to CFFI but generic to the setup.py of any Python package that
tries to compile C code. (Hints: on OS/X 10.8, for errors about
-mno-fused-madd see http://stackoverflow.com/questions/22313407/
Otherwise, see https://wiki.python.org/moin/CompLangPython or
the IRC channel #python on irc.freenode.net.)
Trying to continue anyway. If you are trying to install CFFI from
a build done in a different context, you can ignore this warning.
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/cffi
copying cffi/api.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/verifier.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/recompiler.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/vengine_gen.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/model.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/__init__.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/error.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/ffiplatform.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/cparser.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/backend_ctypes.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/cffi_opcode.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/commontypes.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/pkgconfig.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/setuptools_ext.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/lock.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/vengine_cpy.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_cffi_include.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/parse_c_type.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_embedding.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_cffi_errors.h -> build/lib.linux-x86_64-3.8/cffi
warning: build_py: byte-compiling is disabled, skipping.
running build_ext
building '_cffi_backend' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/c
gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -DTHREAD_STACK_SIZE=0x100000 -fPIC -I/usr/include/ffi -I/usr/include/libffi -I/usr/local/include/python3.8 -c c/_cffi_backend.c -o build/temp.linux-x86_64-3.8/c/_cffi_backend.o
unable to execute 'gcc': No such file or directory
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-_eoslhz1/cffi/setup.py'"'"'; __file__='"'"'/tmp/pip-install-_eoslhz1/cffi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-pah2aui6/install-record.txt --single-version-externally-managed --prefix /tmp/pip-build-env-p3ocmpkd/overlay --compile --install-headers /tmp/pip-build-env-p3ocmpkd/overlay/include/python3.8/cffi Check the logs for full command output.
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/bin/python /usr/local/lib/python3.8/site-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-p3ocmpkd/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'setuptools>=40.6.0' wheel 'cffi>=1.8,!=1.11.3; platform_python_implementation != '"'"'PyPy'"'"'' Check the logs for full command output.
ERROR: Service 'web' failed to build: The command '/bin/sh -c pip install -r requirements.txt' returned a non-zero code: 1
That is my Dockerfile:
# pull official base image
FROM python:3.8.3-alpine
# set work directory
WORKDIR /usr/src/app
# set environment variables
ENV PYTHONDONTWRITEBYTECODE 1
ENV PYTHONUNBUFFERED 1
# install dependencies
RUN pip install --upgrade pip
COPY ./requirements.txt .
RUN pip install -r requirements.txt
# copy project
COPY . .
and docker-compose.yml:
version: '3.7'
services:
web:
build: .
command: python manage.py runserver 0.0.0.0:8000
volumes:
- ./:/usr/src/app/
ports:
- 8000:8000
env_file:
- ./.env.dev
I will add that I bought my laptop a few months ago, and already had problems with Docker on my previous system on this device (that's one of the reasons I changed my system). I switched from Fedora to Ubuntu.
Additionally, there is no "python" alias for python3 in my shell, and because of the unknown reason I need to put "python3 -m" before simple "pip freeze".
I hope that information may be useful.
Thank You.
.
.
.
After adding a "RUN apk add builder-base" in my Dockerfile, following error appears:
Step 8/9 : RUN pip install -r requirements.txt
---> Running in cd9c74fbd831
Collecting asgiref==3.2.10
Downloading asgiref-3.2.10-py3-none-any.whl (19 kB)
Collecting cffi==1.14.3
Downloading cffi-1.14.3.tar.gz (470 kB)
Collecting cryptography==3.2.1
Downloading cryptography-3.2.1.tar.gz (540 kB)
Installing build dependencies: started
Installing build dependencies: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python /usr/local/lib/python3.8/site-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-gbfaltlj/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'setuptools>=40.6.0' wheel 'cffi>=1.8,!=1.11.3; platform_python_implementation != '"'"'PyPy'"'"''
cwd: None
Complete output (104 lines):
Collecting setuptools>=40.6.0
Downloading setuptools-50.3.2-py3-none-any.whl (785 kB)
Collecting wheel
Downloading wheel-0.35.1-py2.py3-none-any.whl (33 kB)
Collecting cffi!=1.11.3,>=1.8
Using cached cffi-1.14.3.tar.gz (470 kB)
Collecting pycparser
Downloading pycparser-2.20-py2.py3-none-any.whl (112 kB)
Building wheels for collected packages: cffi
Building wheel for cffi (setup.py): started
Building wheel for cffi (setup.py): finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-myhajkmm/cffi/setup.py'"'"'; __file__='"'"'/tmp/pip-install-myhajkmm/cffi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9jsg5veu
cwd: /tmp/pip-install-myhajkmm/cffi/
Complete output (38 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/cffi
copying cffi/api.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/verifier.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/recompiler.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/vengine_gen.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/model.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/__init__.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/error.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/ffiplatform.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/cparser.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/backend_ctypes.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/cffi_opcode.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/commontypes.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/pkgconfig.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/setuptools_ext.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/lock.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/vengine_cpy.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_cffi_include.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/parse_c_type.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_embedding.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_cffi_errors.h -> build/lib.linux-x86_64-3.8/cffi
warning: build_py: byte-compiling is disabled, skipping.
running build_ext
building '_cffi_backend' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/c
gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -DTHREAD_STACK_SIZE=0x100000 -fPIC -DUSE__THREAD -DHAVE_SYNC_SYNCHRONIZE -I/usr/include/ffi -I/usr/include/libffi -I/usr/local/include/python3.8 -c c/_cffi_backend.c -o build/temp.linux-x86_64-3.8/c/_cffi_backend.o
c/_cffi_backend.c:15:10: fatal error: ffi.h: No such file or directory
15 | #include <ffi.h>
| ^~~~~~~
compilation terminated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for cffi
Running setup.py clean for cffi
Failed to build cffi
Installing collected packages: setuptools, wheel, pycparser, cffi
Running setup.py install for cffi: started
Running setup.py install for cffi: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-myhajkmm/cffi/setup.py'"'"'; __file__='"'"'/tmp/pip-install-myhajkmm/cffi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-s86a1yn7/install-record.txt --single-version-externally-managed --prefix /tmp/pip-build-env-gbfaltlj/overlay --compile --install-headers /tmp/pip-build-env-gbfaltlj/overlay/include/python3.8/cffi
cwd: /tmp/pip-install-myhajkmm/cffi/
Complete output (38 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/cffi
copying cffi/api.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/verifier.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/recompiler.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/vengine_gen.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/model.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/__init__.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/error.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/ffiplatform.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/cparser.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/backend_ctypes.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/cffi_opcode.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/commontypes.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/pkgconfig.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/setuptools_ext.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/lock.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/vengine_cpy.py -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_cffi_include.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/parse_c_type.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_embedding.h -> build/lib.linux-x86_64-3.8/cffi
copying cffi/_cffi_errors.h -> build/lib.linux-x86_64-3.8/cffi
warning: build_py: byte-compiling is disabled, skipping.
running build_ext
building '_cffi_backend' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/c
gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -DTHREAD_STACK_SIZE=0x100000 -fPIC -DUSE__THREAD -DHAVE_SYNC_SYNCHRONIZE -I/usr/include/ffi -I/usr/include/libffi -I/usr/local/include/python3.8 -c c/_cffi_backend.c -o build/temp.linux-x86_64-3.8/c/_cffi_backend.o
c/_cffi_backend.c:15:10: fatal error: ffi.h: No such file or directory
15 | #include <ffi.h>
| ^~~~~~~
compilation terminated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-myhajkmm/cffi/setup.py'"'"'; __file__='"'"'/tmp/pip-install-myhajkmm/cffi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-s86a1yn7/install-record.txt --single-version-externally-managed --prefix /tmp/pip-build-env-gbfaltlj/overlay --compile --install-headers /tmp/pip-build-env-gbfaltlj/overlay/include/python3.8/cffi Check the logs for full command output.
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/bin/python /usr/local/lib/python3.8/site-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-gbfaltlj/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'setuptools>=40.6.0' wheel 'cffi>=1.8,!=1.11.3; platform_python_implementation != '"'"'PyPy'"'"'' Check the logs for full command output.
ERROR: Service 'web' failed to build: The command '/bin/sh -c pip install -r requirements.txt' returned a non-zero code: 1
Alpine Linux does not support the binary wheels Python packages ship under the manylinux tag, so you have to compile things like cffi and cryptography yourself. To do so you'll need a compiler and the correct set of headers. This is documented in the cryptography installation documentation for Alpine.
Update September 2021: There is now a musllinux standard which allows binary wheels that work with Alpine. To use them you must have pip 21.2.4 or greater.
in your dockerfile you can use a base image that has more libraries for compiling the dependencies
# pull official base image
FROM python:3.8
this should allow you to compile the app
Related
I am trying to install mysqlclient on macOS BigSur(running on M1 chip mac) as a part of implementing django project using MySQL DB. However, I am getting below error:
Collecting mysqlclient
Using cached mysqlclient-2.0.3.tar.gz (88 kB)
Using legacy 'setup.py install' for mysqlclient, since package 'wheel' is not installed.
Installing collected packages: mysqlclient
Running setup.py install for mysqlclient ... error
ERROR: Command errored out with exit status 1:
command: /Library/Frameworks/Python.framework/Versions/3.9/bin/python3.9 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/rs/vv5212l55ys7lk0vx4p87gxw0000gn/T/pip-install-73_o12ze/mysqlclient_23e4f763c971433c863260eda891b9d0/setup.py'"'"'; __file__='"'"'/private/var/folders/rs/vv5212l55ys7lk0vx4p87gxw0000gn/T/pip-install-73_o12ze/mysqlclient_23e4f763c971433c863260eda891b9d0/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/rs/vv5212l55ys7lk0vx4p87gxw0000gn/T/pip-record-jl3d35rj/install-record.txt --single-version-externally-managed --compile --install-headers /Library/Frameworks/Python.framework/Versions/3.9/include/python3.9/mysqlclient
cwd: /private/var/folders/rs/vv5212l55ys7lk0vx4p87gxw0000gn/T/pip-install-73_o12ze/mysqlclient_23e4f763c971433c863260eda891b9d0/
Complete output (41 lines):
mysql_config --version
['8.0.22']
mysql_config --libs
['-L/usr/local/mysql/lib', '-lmysqlclient', '-lssl', '-lcrypto', '-lresolv']
mysql_config --cflags
['-I/usr/local/mysql/include']
ext_options:
library_dirs: ['/usr/local/mysql/lib']
libraries: ['mysqlclient', 'resolv']
extra_compile_args: ['-std=c99']
extra_link_args: []
include_dirs: ['/usr/local/mysql/include']
extra_objects: []
define_macros: [('version_info', "(2,0,3,'final',0)"), ('__version__', '2.0.3')]
running install
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.9
creating build/lib.macosx-10.9-x86_64-3.9/MySQLdb
copying MySQLdb/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb
copying MySQLdb/_exceptions.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb
copying MySQLdb/connections.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb
copying MySQLdb/converters.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb
copying MySQLdb/cursors.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb
copying MySQLdb/release.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb
copying MySQLdb/times.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb
creating build/lib.macosx-10.9-x86_64-3.9/MySQLdb/constants
copying MySQLdb/constants/__init__.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb/constants
copying MySQLdb/constants/CLIENT.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb/constants
copying MySQLdb/constants/CR.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb/constants
copying MySQLdb/constants/ER.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb/constants
copying MySQLdb/constants/FIELD_TYPE.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb/constants
copying MySQLdb/constants/FLAG.py -> build/lib.macosx-10.9-x86_64-3.9/MySQLdb/constants
running build_ext
building 'MySQLdb._mysql' extension
creating build/temp.macosx-10.9-x86_64-3.9
creating build/temp.macosx-10.9-x86_64-3.9/MySQLdb
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g -I/usr/local/opt/openssl#1.1/include -Dversion_info=(2,0,3,'final',0) -D__version__=2.0.3 -I/usr/local/mysql/include -I/Library/Frameworks/Python.framework/Versions/3.9/include/python3.9 -c MySQLdb/_mysql.c -o build/temp.macosx-10.9-x86_64-3.9/MySQLdb/_mysql.o -std=c99
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
error: command '/usr/bin/gcc' failed with exit code 1
----------------------------------------
ERROR: Command errored out with exit status 1: /Library/Frameworks/Python.framework/Versions/3.9/bin/python3.9 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/rs/vv5212l55ys7lk0vx4p87gxw0000gn/T/pip-install-73_o12ze/mysqlclient_23e4f763c971433c863260eda891b9d0/setup.py'"'"'; __file__='"'"'/private/var/folders/rs/vv5212l55ys7lk0vx4p87gxw0000gn/T/pip-install-73_o12ze/mysqlclient_23e4f763c971433c863260eda891b9d0/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/rs/vv5212l55ys7lk0vx4p87gxw0000gn/T/pip-record-jl3d35rj/install-record.txt --single-version-externally-managed --compile --install-headers /Library/Frameworks/Python.framework/Versions/3.9/include/python3.9/mysqlclient Check the logs for full command output.
Please note that I have already checked out many questions opened for this same issue. But none of the suggested fix working for me.
Please help
This Issue is fixed now for me and for that I did 2 things:
1 - Installed wheel package
pip3 install wheel
2 - I followed this thread - Git is not working after macOS Update (xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools)
try to install the latest version of mysqlclient
mysqlclient==2.0.3
version 2.0.3 worked for me in python 3.9 (win)
I'm trying to deploy my flask application on a cpanel with CloudLinux license, I need some modules, but when I try to install mysqlclient and flask-mysqldb I get errors, I have seen that people have a lot of problems with this module and I have seen how to fix it but in Ubuntu, Debian, etc... and I would like to know how to fix it in CloudLinux, here is the error when I type pip install mysqlclient:
ERROR: Command errored out with exit status 1:
command: /home/clouxlla/virtualenv/flask/3.8/bin/python3.8_bin -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-oenqn_iu/mysqlcli ent/setup.py'"'"'; __file__='"'"'/tmp/pip-install-oenqn_iu/mysqlclient/setup.py' "'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace(' "'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"' "'))' bdist_wheel -d /tmp/pip-wheel-opkxp_ee
cwd: /tmp/pip-install-oenqn_iu/mysqlclient/
Complete output (29 lines):
/opt/alt/python38/lib64/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long_description_content_type'
warnings.warn(msg)
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/__init__.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/_exceptions.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/connections.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/converters.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/cursors.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/release.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/times.py -> build/lib.linux-x86_64-3.8/MySQLdb
creating build/lib.linux-x86_64-3.8/MySQLdb/constants
copying MySQLdb/constants/__init__.py -> build/lib.linux-x86_64-3.8/MySQLdb/co nstants
copying MySQLdb/constants/CLIENT.py -> build/lib.linux-x86_64-3.8/MySQLdb/cons tants
copying MySQLdb/constants/CR.py -> build/lib.linux-x86_64-3.8/MySQLdb/constant s
copying MySQLdb/constants/ER.py -> build/lib.linux-x86_64-3.8/MySQLdb/constant s
copying MySQLdb/constants/FIELD_TYPE.py -> build/lib.linux-x86_64-3.8/MySQLdb/ constants
copying MySQLdb/constants/FLAG.py -> build/lib.linux-x86_64-3.8/MySQLdb/consta nts
running build_ext
building 'MySQLdb._mysql' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/MySQLdb
/opt/rh/devtoolset-7/root/usr/bin/gcc -pthread -Wno-unused-result -Wsign-compa re -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURC E -fPIC -fwrapv -fPIC -Dversion_info=(2,0,1,'final',0) -D__version__=2.0.1 -I/us r/include/mysql -I/usr/include/mysql/.. -I/opt/alt/python38/include/python3.8 -c MySQLdb/_mysql.c -o build/temp.linux-x86_64-3.8/MySQLdb/_mysql.o
unable to execute '/opt/rh/devtoolset-7/root/usr/bin/gcc': No such file or dir ectory
error: command '/opt/rh/devtoolset-7/root/usr/bin/gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for mysqlclient
DEPRECATION: Could not build wheels for mysqlclient which do not use PEP 517. pip will fall back to legacy 'setup.py install' for these. pip 21.0 will remove support for this functionality. A possible replacement is to fix the wheel build issue reported above. You can find discussion regarding this at https://github.com/pypa/pip/issues/8368.
ERROR: Command errored out with exit status 1:
command: /home/clouxlla/virtualenv/flask/3.8/bin/python3.8_bin -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-oenqn_iu/mysqlclient/setup.py'"'"'; __file__='"'"'/tmp/pip-install-oenqn_iu/mysqlclient/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-jckn3ad2/install-record.txt --single-version-externally-managed --compile --install-headers /home/clouxlla/virtualenv/flask/3.8/include/site/python3.8/mysqlclient
cwd: /tmp/pip-install-oenqn_iu/mysqlclient/
Complete output (29 lines):
/opt/alt/python38/lib64/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long_description_content_type'
warnings.warn(msg)
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/__init__.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/_exceptions.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/connections.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/converters.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/cursors.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/release.py -> build/lib.linux-x86_64-3.8/MySQLdb
copying MySQLdb/times.py -> build/lib.linux-x86_64-3.8/MySQLdb
creating build/lib.linux-x86_64-3.8/MySQLdb/constants
copying MySQLdb/constants/__init__.py -> build/lib.linux-x86_64-3.8/MySQLdb/constants
copying MySQLdb/constants/CLIENT.py -> build/lib.linux-x86_64-3.8/MySQLdb/constants
copying MySQLdb/constants/CR.py -> build/lib.linux-x86_64-3.8/MySQLdb/constants
copying MySQLdb/constants/ER.py -> build/lib.linux-x86_64-3.8/MySQLdb/constants
copying MySQLdb/constants/FIELD_TYPE.py -> build/lib.linux-x86_64-3.8/MySQLdb/constants
copying MySQLdb/constants/FLAG.py -> build/lib.linux-x86_64-3.8/MySQLdb/constants
running build_ext
building 'MySQLdb._mysql' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/MySQLdb
/opt/rh/devtoolset-7/root/usr/bin/gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Dversion_info=(2,0,1,'final',0) -D__version__=2.0.1 -I/usr/include/mysql -I/usr/include/mysql/.. -I/opt/alt/python38/include/python3.8 -c MySQLdb/_mysql.c -o build/temp.linux-x86_64-3.8/MySQLdb/_mysql.o
unable to execute '/opt/rh/devtoolset-7/root/usr/bin/gcc': No such file or directory
error: command '/opt/rh/devtoolset-7/root/usr/bin/gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /home/clouxlla/virtualenv/flask/3.8/bin/python3.8_bin -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-oenqn_iu/mysqlclient/setup.py'"'"'; __file__='"'"'/tmp/pip-install-oenqn_iu/mysqlclient/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-jckn3ad2/install-record.txt --single-version-externally-managed --compile --install-headers /home/clouxlla/virtualenv/flask/3.8/include/site/python3.8/mysqlclient Check the logs for full command output.
What should I do? Thanks you all in advance.
MySQL provides their own version of MySQL adapter - MySQL connector, an all-in python module that uses MySQL API with no C modules dependencies and only standard python modules used.
It works inside the CloudLinux CageFS without the installation of any modules or modifications of any configs.
You may read more about it here:
https://dev.mysql.com/doc/connector-python/en/connector-python-introduction.html
I am trying to run my windows created python script on MacOS.
I have managed to install all of the needed modules apart from MySQLdb.
I am trying to install from pip3 using this command:
pip3 install mysqlclient
But get a massive error:
Collecting mysqlclient
Using cached https://files.pythonhosted.org/packages/4d/38/c5f8bac9c50f3042c8f05615f84206f77f03db79781db841898fde1bb284/mysqlclient-1.4.4.tar.gz
Building wheels for collected packages: mysqlclient
Building wheel for mysqlclient (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /Applications/Xcode.app/Contents/Developer/usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/11/bj20_z594y1562dx9p3bc4km0000gn/T/pip-install-cbceeulv/mysqlclient/setup.py'"'"'; __file__='"'"'/private/var/folders/11/bj20_z594y1562dx9p3bc4km0000gn/T/pip-install-cbceeulv/mysqlclient/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/11/bj20_z594y1562dx9p3bc4km0000gn/T/pip-wheel-md6mses2 --python-tag cp37
cwd: /private/var/folders/11/bj20_z594y1562dx9p3bc4km0000gn/T/pip-install-cbceeulv/mysqlclient/
Complete output (30 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.14-x86_64-3.7
creating build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/__init__.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/_exceptions.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/compat.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/connections.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/converters.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/cursors.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/release.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/times.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
creating build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/__init__.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/CLIENT.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/CR.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/ER.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/FIELD_TYPE.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/FLAG.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
running build_ext
building 'MySQLdb._mysql' extension
creating build/temp.macosx-10.14-x86_64-3.7
creating build/temp.macosx-10.14-x86_64-3.7/MySQLdb
xcrun -sdk macosx clang -arch x86_64 -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -iwithsysroot/System/Library/Frameworks/System.framework/PrivateHeaders -iwithsysroot/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/Headers -Dversion_info=(1,4,4,'final',0) -D__version__=1.4.4 -I/usr/local/Cellar/mysql-connector-c/6.1.11/include -I/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/include/python3.7m -c MySQLdb/_mysql.c -o build/temp.macosx-10.14-x86_64-3.7/MySQLdb/_mysql.o
xcrun -sdk macosx clang -arch x86_64 -bundle -undefined dynamic_lookup build/temp.macosx-10.14-x86_64-3.7/MySQLdb/_mysql.o -L/usr/local/Cellar/mysql-connector-c/6.1.11/lib -lmysqlclient -lssl -lcrypto -o build/lib.macosx-10.14-x86_64-3.7/MySQLdb/_mysql.cpython-37m-darwin.so
ld: library not found for -lssl
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'xcrun' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for mysqlclient
Running setup.py clean for mysqlclient
Failed to build mysqlclient
Installing collected packages: mysqlclient
Running setup.py install for mysqlclient ... error
ERROR: Command errored out with exit status 1:
command: /Applications/Xcode.app/Contents/Developer/usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/11/bj20_z594y1562dx9p3bc4km0000gn/T/pip-install-cbceeulv/mysqlclient/setup.py'"'"'; __file__='"'"'/private/var/folders/11/bj20_z594y1562dx9p3bc4km0000gn/T/pip-install-cbceeulv/mysqlclient/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/11/bj20_z594y1562dx9p3bc4km0000gn/T/pip-record-zi37f1af/install-record.txt --single-version-externally-managed --compile
cwd: /private/var/folders/11/bj20_z594y1562dx9p3bc4km0000gn/T/pip-install-cbceeulv/mysqlclient/
Complete output (30 lines):
running install
running build
running build_py
creating build
creating build/lib.macosx-10.14-x86_64-3.7
creating build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/__init__.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/_exceptions.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/compat.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/connections.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/converters.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/cursors.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/release.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
copying MySQLdb/times.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb
creating build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/__init__.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/CLIENT.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/CR.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/ER.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/FIELD_TYPE.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
copying MySQLdb/constants/FLAG.py -> build/lib.macosx-10.14-x86_64-3.7/MySQLdb/constants
running build_ext
building 'MySQLdb._mysql' extension
creating build/temp.macosx-10.14-x86_64-3.7
creating build/temp.macosx-10.14-x86_64-3.7/MySQLdb
xcrun -sdk macosx clang -arch x86_64 -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -iwithsysroot/System/Library/Frameworks/System.framework/PrivateHeaders -iwithsysroot/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/Headers -Dversion_info=(1,4,4,'final',0) -D__version__=1.4.4 -I/usr/local/Cellar/mysql-connector-c/6.1.11/include -I/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.7/include/python3.7m -c MySQLdb/_mysql.c -o build/temp.macosx-10.14-x86_64-3.7/MySQLdb/_mysql.o
xcrun -sdk macosx clang -arch x86_64 -bundle -undefined dynamic_lookup build/temp.macosx-10.14-x86_64-3.7/MySQLdb/_mysql.o -L/usr/local/Cellar/mysql-connector-c/6.1.11/lib -lmysqlclient -lssl -lcrypto -o build/lib.macosx-10.14-x86_64-3.7/MySQLdb/_mysql.cpython-37m-darwin.so
ld: library not found for -lssl
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'xcrun' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /Applications/Xcode.app/Contents/Developer/usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/11/bj20_z594y1562dx9p3bc4km0000gn/T/pip-install-cbceeulv/mysqlclient/setup.py'"'"'; __file__='"'"'/private/var/folders/11/bj20_z594y1562dx9p3bc4km0000gn/T/pip-install-cbceeulv/mysqlclient/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/11/bj20_z594y1562dx9p3bc4km0000gn/T/pip-record-zi37f1af/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.
I have tried multiple forum posts that I have found and nothing is working. I have also tried to build from Source but I get an error about ConfigParser not being installed - which it has been via pip.
Please could someone help?!
P.S Pip has been updated to the latest version.
try this:
brew install mysql
or
https://github.com/PyMySQL/mysqlclient-python/issues/169
I have the following Dockerfile:
FROM python:2.7
RUN pip install MySQL-python==1.2.5
I build it like this:
docker build -t my-image .
But it fails. Below is the failure. How can I get this image to build successfully?
I swear this was working last time I tried it a few months ago.
Installing collected packages: MySQL-python
Running setup.py install for MySQL-python: started
Running setup.py install for MySQL-python: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-JjSDFe/MySQL-python/setup.py'"'"'; __file__='"'"'/tmp/pip-install-JjSDFe/MySQL-python/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-_GF1e3/install-record.txt --single-version-externally-managed --compile
cwd: /tmp/pip-install-JjSDFe/MySQL-python/
Complete output (38 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.7
copying _mysql_exceptions.py -> build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/__init__.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/converters.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/connections.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/cursors.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/release.py -> build/lib.linux-x86_64-2.7/MySQLdb
copying MySQLdb/times.py -> build/lib.linux-x86_64-2.7/MySQLdb
creating build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/__init__.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/CR.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/FIELD_TYPE.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/ER.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/FLAG.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/REFRESH.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/CLIENT.py -> build/lib.linux-x86_64-2.7/MySQLdb/constants
running build_ext
building '_mysql' extension
creating build/temp.linux-x86_64-2.7
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Dversion_info=(1,2,5,'final',1) -D__version__=1.2.5 -I/usr/include/mariadb -I/usr/include/mariadb/mysql -I/usr/local/include/python2.7 -c _mysql.c -o build/temp.linux-x86_64-2.7/_mysql.o
In file included from _mysql.c:44:
/usr/include/mariadb/my_config.h:3:2: warning: #warning This file should not be included by clients, include only <mysql.h> [-Wcpp]
#warning This file should not be included by clients, include only <mysql.h>
^~~~~~~
In file included from _mysql.c:46:
/usr/include/mariadb/mysql.h:441:3: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
MYSQL_CLIENT_PLUGIN_HEADER
^~~~~~~~~~~~~~~~~~~~~~~~~~
_mysql.c: In function ‘_mysql_ConnectionObject_ping’:
_mysql.c:2005:41: error: ‘MYSQL’ {aka ‘struct st_mysql’} has no member named ‘reconnect’
if ( reconnect != -1 ) self->connection.reconnect = reconnect;
^
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-JjSDFe/MySQL-python/setup.py'"'"'; __file__='"'"'/tmp/pip-install-JjSDFe/MySQL-python/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-_GF1e3/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.
The command '/bin/sh -c pip install MySQL-python==1.2.5' returned a non-zero code: 1
I have a virtualenv named dev and I am trying to install the required dependencies. During that, I am getting the following error at mysqlclient when I am trying to install using pip install -r requirements.txt which has the requirements:
This is the Error Log for the command which I am running:
Collecting slack-log-handler==0.2.2 (from -r requirements.txt (line 16))
Collecting SQLAlchemy==1.0.15 (from -r requirements.txt (line 17))
Requirement already satisfied: Werkzeug==0.11.11 in /Users/bharathv/Desktop/Work/Customer_API/dev/lib/python2.7/site-packages (from -r requirements.txt (line 18)) (0.11.11)
Collecting pendulum==2.0.4 (from -r requirements.txt (line 19))
Collecting typing<4.0,>=3.6; python_version < "3.5" (from pendulum==2.0.4->-r requirements.txt (line 19))
Using cached https://files.pythonhosted.org/packages/cc/3e/29f92b7aeda5b078c86d14f550bf85cff809042e3429ace7af6193c3bc9f/typing-3.6.6-py2-none-any.whl
Collecting pytzdata>=2018.3 (from pendulum==2.0.4->-r requirements.txt (line 19))
Using cached https://files.pythonhosted.org/packages/89/02/a3a1cef5074c28157df63846d05aa893f007a92f6bafec0d61cae36bf69d/pytzdata-2018.9-py2.py3-none-any.whl
Building wheels for collected packages: mysqlclient
Building wheel for mysqlclient (setup.py) ... error
Complete output from command /Users/bharathv/Desktop/Work/Customer_API/dev/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/dc/dqq29fh52nq9nppk0rd0kdg40000gp/T/pip-install-pemYYE/mysqlclient/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /private/var/folders/dc/dqq29fh52nq9nppk0rd0kdg40000gp/T/pip-wheel-P7vfx2 --python-tag cp27:
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.14-x86_64-2.7
copying _mysql_exceptions.py -> build/lib.macosx-10.14-x86_64-2.7
creating build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/__init__.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/compat.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/converters.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/connections.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/cursors.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/release.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/times.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
creating build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/__init__.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/CR.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/FIELD_TYPE.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/ER.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/FLAG.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/REFRESH.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/CLIENT.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
running build_ext
building '_mysql' extension
creating build/temp.macosx-10.14-x86_64-2.7
clang -fno-strict-aliasing -fno-common -dynamic -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Dversion_info=(1,3,7,'final',1) -D__version__=1.3.7 -I/usr/local/Cellar/mysql/8.0.15/include/mysql -I/usr/local/Cellar/python#2/2.7.16/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c _mysql.c -o build/temp.macosx-10.14-x86_64-2.7/_mysql.o
_mysql.c:29:10: fatal error: 'my_config.h' file not found
#include "my_config.h"
^~~~~~~~~~~~~
1 error generated.
error: command 'clang' failed with exit status 1
----------------------------------------
Failed building wheel for mysqlclient
Running setup.py clean for mysqlclient
Failed to build mysqlclient
Installing collected packages: mysqlclient, Flask-MySQLdb, pytz, Flask-RESTful, mysql, requests, slack-log-handler, SQLAlchemy, typing, pytzdata, pendulum
Running setup.py install for mysqlclient ... error
Complete output from command /Users/bharathv/Desktop/Work/Customer_API/dev/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/dc/dqq29fh52nq9nppk0rd0kdg40000gp/T/pip-install-pemYYE/mysqlclient/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/dc/dqq29fh52nq9nppk0rd0kdg40000gp/T/pip-record-y_LFeb/install-record.txt --single-version-externally-managed --compile --install-headers /Users/bharathv/Desktop/Work/Customer_API/dev/bin/../include/site/python2.7/mysqlclient:
running install
running build
running build_py
creating build
creating build/lib.macosx-10.14-x86_64-2.7
copying _mysql_exceptions.py -> build/lib.macosx-10.14-x86_64-2.7
creating build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/__init__.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/compat.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/converters.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/connections.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/cursors.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/release.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
copying MySQLdb/times.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb
creating build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/__init__.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/CR.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/FIELD_TYPE.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/ER.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/FLAG.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/REFRESH.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
copying MySQLdb/constants/CLIENT.py -> build/lib.macosx-10.14-x86_64-2.7/MySQLdb/constants
running build_ext
building '_mysql' extension
creating build/temp.macosx-10.14-x86_64-2.7
clang -fno-strict-aliasing -fno-common -dynamic -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/Tk.framework/Versions/8.5/Headers -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Dversion_info=(1,3,7,'final',1) -D__version__=1.3.7 -I/usr/local/Cellar/mysql/8.0.15/include/mysql -I/usr/local/Cellar/python#2/2.7.16/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c _mysql.c -o build/temp.macosx-10.14-x86_64-2.7/_mysql.o
_mysql.c:29:10: fatal error: 'my_config.h' file not found
#include "my_config.h"
^~~~~~~~~~~~~
1 error generated.
error: command 'clang' failed with exit status 1
----------------------------------------
Command "/Users/bharathv/Desktop/Work/Customer_API/dev/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/dc/dqq29fh52nq9nppk0rd0kdg40000gp/T/pip-install-pemYYE/mysqlclient/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/dc/dqq29fh52nq9nppk0rd0kdg40000gp/T/pip-record-y_LFeb/install-record.txt --single-version-externally-managed --compile --install-headers /Users/bharathv/Desktop/Work/Customer_API/dev/bin/../include/site/python2.7/mysqlclient" failed with error code 1 in /private/var/folders/dc/dqq29fh52nq9nppk0rd0kdg40000gp/T/pip-install-pemYYE/mysqlclient/
Any help would be greatly appreciated.
Regards,
Bharath
MySQLdb package is a wrapper of mysql C API. so it depends on OS package. and it is out of virtualenv scope.
so you need to install proper mysql package from your os package manager.
or you can avoid this error by using pure python connector like pymysql