Calculating separated shapes area in a binary mask with opencv - python

I am trying to detect human body mask, but my algorithm sometimes makes mistake like the image below. I was thinking if I could calculate individual shapes area (connected white pixels) in the image, I can just keep the largest one and my problem will be solved. Is there a way for that?

You can also use cv2.findContours() to get the outlines of each of the white blobs. The contours come with a lot of extra properties that you can find here:
https://docs.opencv.org/master/d1/d32/tutorial_py_contour_properties.html
This includes getting their internal area.
import cv2
import numpy as np
# load image
img = cv2.imread("outline.png");
# set as binary mask
gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY);
mask = cv2.inRange(gray, 155, 255);
# contours # if you're using OpenCV 3* then it returns as _, contours, _
contours, _ = cv2.findContours(mask, cv2.RETR_TREE, cv2.CHAIN_APPROX_SIMPLE);
# find the biggest contour
biggest = None;
biggest_area = -1;
for con in contours:
area = cv2.contourArea(con);
if biggest_area < area:
biggest_area = area;
biggest = con;
# draw the new contour
redraw = np.zeros_like(img);
cv2.drawContours(redraw, [biggest], -1, (100, 150, 0), -1);
# show
cv2.imshow("Biggest", redraw);
cv2.waitKey(0);

You can use the connectedComponents function in OpenCV for this purpose.
retval, labels=cv.connectedComponents(image[, labels[, connectivity[, ltype]]])
More details of this function can be found in the documentation. The output image is a labelled image where each connected component is given a label.
The output retval is the total number of labels (also number of connected components).
Then all you have to do is to iterate through the connected components to find the one with most pixels.

Related

cv2.inRange() make it work for all inputs

I'm using OpenCv (4.x) on Anime Sketch dataset from Kaggle to get the image's silhouette. What I found to be the hardest part was to detect that empty areas inside that silhouette, areas between arm-body, legs and hair. The tutorials I followed always use "full filled" objects, like a ball, head or cars and I ended up tunning that code to make it work, but it is too specific so that tunning just work ok on one image.
Playing around in online-image-editor.com I've noticed that I can use the tool called Trans-parency to change one color, just like cv2.inRange() does.
Original image
The code:
image = cv2.imread("2.png",cv2.IMREAD_UNCHANGED)
crop_img = image[:, 0:512]
fuzz_factor = 0.97
maxColor = (crop_img[1,1] * 1).astype(int)
minColor = (maxColor * fuzz_factor).astype(int)
mask = cv2.inRange(crop_img, minColor, maxColor)
cv2.imshow("mask", mask)
cv2.waitKey()
and outputs this (not that bad..)
BUT then trying with another image it doesn't work anymore, output:
So, question(s):
There is some "magic rule" where I can extract a specific fuzz_factor for each image?
How could I use the image's right half to get that silhouette/contour?
Thanks guys
I post to close this question.
Thanks to Micka I made some progress, there are two variables that have high impact on output's quality:
fuzz_factor: which sets the color range for cv2.inRange()
max_contours: number of contours to draw (sorted by size)
High numbers are better until there are white zones that are not background, so next thing could be discard that ones.
import numpy as np
import cv2
# constants
fuzz_factor = 1
max_contours = -10
image_path = "9.png"
image = cv2.imread(image_path)
image = image[:, 0:512]
# background color boundaries
color = image[3,3]
upper = (color).astype(int)
lower = (color * (100 - fuzz_factor/2.0)/100).astype(int)
# create mask with specific colors
mask = cv2.inRange(image, lower, upper)
# get all contours
contours, _ = cv2.findContours(mask, mode = cv2.RETR_EXTERNAL, method = cv2.CHAIN_APPROX_NONE)
if(len(contours) > 1):
# get the [max_contours] biggest areas
contours = sorted(contours, key=cv2.contourArea)[max_contours:]
# mask where contours are filled
mask = np.zeros_like(image)
# draw contours and fill
cv2.drawContours(mask, contours, -1, color=[255,255,255], thickness= -1)
cv2.drawContours(image, contours, -1, 255, 2)
cv2.imshow("Result", np.hstack([image, mask]))
cv2.waitKey(0)

how to fill the hollow lines opencv

I have an image like this:
after I applied some processings e.g. cv2.Canny(), it looks like this now:
As you can see that the black lines become hollow.
I have tried erosion and dilation, but if I do them many times, the 2 entrances will be closed(meaning become connected line or closed contour).
How could I make those lines solid like the below image while keep the 2 entrances not affected?
Update 1
I have tested the following answers with a few of photos, but the code seems customized to only be able to handle this one particular picture. Due to the restriction of SOF, I cannot upload photos larger than 2MB, so I uploaded them into my Microsoft OneDrive folder for your convenience to test.
https://1drv.ms/u/s!Asflam6BEzhjgbIhgkL4rt1NLSjsZg?e=OXXKBK
Update 2
I picked up #fmw42's post as answer as his answer is the most detailed one. It doesn't answer my question but points out the correct way to process maze which is my ultimate goal. I like his approach of answering questions, firstly tells you what each step should do so that you have a clear idea about how to do the task, then provide the full code example from beginning to end. Very helpful.
Due to the limitation of SOF, I can only pick up one answer. If multiple answers are allowed, I would also pick up Shamshirsaz.Navid's answer. His answer not only points to the correct direction to solve the issue, but also the explanation with visualization really works well for me~! I guess it works equally well for all people who are trying to understand why each line of code is needed. Also he follows up my questions in comments, this makes the SOF a bit interactive :)
The Threshold track bar in Ann Zen's answer is also a very useful tip for people to quickly find out a optimal value.
Here is one way to process the maze and rectify it in Python/OpenCV.
Read the input
Convert to gray
Threshold
Use morphology close to remove the thinnest (extraneous) black lines
Invert the threshold
Get the external contours
Keep on those contours that are larger than 1/4 of both the width and height of the input
Draw those contours as white lines on black background
Get the convex hull from the white contour lines image
Draw the convex hull as white lines on black background
Use GoodFeaturesToTrack to get the 4 corners from the white hull lines image
Sort the 4 corners by angle relative to the centroid so that they are ordered clockwise: top-left, top-right, bottom-right, bottom-left
Set these points as the array of conjugate control points for the input
Use 1/2 the dimensions of the input to define the array of conjugate control points for the output
Compute the perspective transformation matrix
Warp the input image using the perspective matrix
Save the results
Input:
import cv2
import numpy as np
import math
# load image
img = cv2.imread('maze.jpg')
hh, ww = img.shape[:2]
# convert to gray
gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY)
# threshold
thresh = cv2.threshold(gray, 0, 255, cv2.THRESH_BINARY+cv2.THRESH_OTSU)[1]
# use morphology to remove the thin lines
kernel = cv2.getStructuringElement(cv2.MORPH_RECT , (5,1))
thresh = cv2.morphologyEx(thresh, cv2.MORPH_CLOSE, kernel)
# invert so that lines are white so that we can get contours for them
thresh_inv = 255 - thresh
# get external contours
contours = cv2.findContours(thresh_inv, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE)
contours = contours[0] if len(contours) == 2 else contours[1]
# keep contours whose bounding boxes are greater than 1/4 in each dimension
# draw them as white on black background
contour = np.zeros((hh,ww), dtype=np.uint8)
for cntr in contours:
x,y,w,h = cv2.boundingRect(cntr)
if w > ww/4 and h > hh/4:
cv2.drawContours(contour, [cntr], 0, 255, 1)
# get convex hull from contour image white pixels
points = np.column_stack(np.where(contour.transpose() > 0))
hull_pts = cv2.convexHull(points)
# draw hull on copy of input and on black background
hull = img.copy()
cv2.drawContours(hull, [hull_pts], 0, (0,255,0), 2)
hull2 = np.zeros((hh,ww), dtype=np.uint8)
cv2.drawContours(hull2, [hull_pts], 0, 255, 2)
# get 4 corners from white hull points on black background
num = 4
quality = 0.001
mindist = max(ww,hh) // 4
corners = cv2.goodFeaturesToTrack(hull2, num, quality, mindist)
corners = np.int0(corners)
for corner in corners:
px,py = corner.ravel()
cv2.circle(hull, (px,py), 5, (0,0,255), -1)
# get angles to each corner relative to centroid and store with x,y values in list
# angles are clockwise between -180 and +180 with zero along positive X axis (to right)
corner_info = []
center = np.mean(corners, axis=0)
centx = center.ravel()[0]
centy = center.ravel()[1]
for corner in corners:
px,py = corner.ravel()
dx = px - centx
dy = py - centy
angle = (180/math.pi) * math.atan2(dy,dx)
corner_info.append([px,py,angle])
# function to define sort key as element 2 (i.e. angle)
def takeThird(elem):
return elem[2]
# sort corner_info on angle so result will be TL, TR, BR, BL order
corner_info.sort(key=takeThird)
# make conjugate control points
# get input points from corners
corner_list = []
for x, y, angle in corner_info:
corner_list.append([x,y])
print(corner_list)
# define input points from (sorted) corner_list
input = np.float32(corner_list)
# define output points from dimensions of image, say half of input image
width = ww // 2
height = hh // 2
output = np.float32([[0,0], [width-1,0], [width-1,height-1], [0,height-1]])
# compute perspective matrix
matrix = cv2.getPerspectiveTransform(input,output)
# do perspective transformation setting area outside input to black
result = cv2.warpPerspective(img, matrix, (width,height), cv2.INTER_LINEAR, borderMode=cv2.BORDER_CONSTANT, borderValue=(0,0,0))
# save output
cv2.imwrite('maze_thresh.jpg', thresh)
cv2.imwrite('maze_contour.jpg', contour)
cv2.imwrite('maze_hull.jpg', hull)
cv2.imwrite('maze_rectified.jpg', result)
# Display various images to see the steps
cv2.imshow('thresh', thresh)
cv2.imshow('contour', contour)
cv2.imshow('hull', hull)
cv2.imshow('result', result)
cv2.waitKey(0)
cv2.destroyAllWindows()
Thresholded Image after morphology:
Filtered Contours on black background:
Convex hull and 4 corners on input image:
Result from perspective warp:
You can try a simple threshold to detect the lines of the maze, as they are conveniently black:
import cv2
img = cv2.imread("maze.jpg")
gray = cv2.cvtColor(img, cv2.BGR2GRAY)
_, thresh = cv2.threshold(gray, 60, 255, cv2.THRESH_BINARY)
cv2.imshow("Image", thresh)
cv2.waitKey(0)
Output:
You can adjust the threshold yourself with trackbars:
import cv2
cv2.namedWindow("threshold")
cv2.createTrackbar("", "threshold", 0, 255, id)
img = cv2.imread("maze.jpg")
while True:
gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY)
t = cv2.getTrackbarPos("", "threshold")
_, thresh = cv2.threshold(gray, t, 255, cv2.THRESH_BINARY)
cv2.imshow("Image", thresh)
if cv2.waitKey(1) & 0xFF == ord("q"): # If you press the q key
break
Canny is an edge detector. It detects the lines along which color changes. A line in your input image has two such transitions, one on each side. Therefore you see two parallel lines on each side of a line in the image. This answer of mine explains the difference between edges and lines.
So, you shouldn’t be using an edge detector to detect lines in an image.
If a simple threshold doesn't properly binarize this image, try using a local threshold ("adaptive threshold" in OpenCV). Another thing that works well for images like these is applying a top hat filter (for this image, it would be a closing(img) - img), where the structuring element is adjusted to the width of the lines you want to find. This will result in an image that is easy to threshold and will preserve all lines thinner than the structuring element.
Check this:
import cv2
import numpy as np
im=cv2.imread("test2.jpg",1)
#convert 2 gray
mask=cv2.cvtColor(im,cv2.COLOR_BGR2GRAY)
#convert 2 black and white
mask=cv2.threshold(mask,127,255,cv2.THRESH_BINARY)[1]
#remove thin lines and texts and then remake main lines
mask=cv2.dilate(mask,np.ones((5, 5), 'uint8'))
mask=cv2.erode(mask,np.ones((4, 4), 'uint8'))
#smooth lines
mask=cv2.medianBlur(mask,3)
#write output mask
cv2.imwrite("mask2.jpg",mask)
From now on, everything can be done. You can delete extra blobs, you can extract lines from the original image according to the mask, and things like that.
Median:
Median changes are not much for this project. And it can be safely removed. But I prefer it because it rounds the ends of the lines a bit. You have to zoom in a lot to see the pixels. But this technique is usually used to remove salt/pepper noise.
Erode Kernel:
In the case of the kernel, the larger the number, the thicker the lines. Well, this is not always good. Because it causes the path lines to stick to the arrow and later it becomes difficult to separate the paths from the arrow.
Update:
It does not matter if part of the Maze is cleared. The important thing is that from this mask you can draw a rectangle around this shape and create a new mask for this image.
Make a white rectangle around these paths in a new mask. Completely whiten the inside of the mask with FloodFill or any other technique. Now you have a new mask that can take the whole shape out of the original image. Now in the next step you can correct Perspective.

Opencv not finding all contours

I'm trying to find the contours of this image, but the method findContours only returns 1 contour, the contour is highlighted in image 2. I'm trying to find all external contours like these circles where the numbers are inside. What am i doing wrong? What can i do to accomplish it?
image 1:
image 2:
Below is the relevant portion of my code.
thresh = cv2.threshold(image, 0, 255,
cv2.THRESH_BINARY_INV | cv2.THRESH_OTSU)[1]
cnts = cv2.findContours(thresh.copy(), cv2.RETR_EXTERNAL,
cv2.CHAIN_APPROX_SIMPLE)
When i change cv2.RETR_EXTERNAL to cv2.RETR_LIST it seems to detect the same contour twice or something like this. Image 3 shows when the border of circle is first detected and then it is detected again as shows image 4. I'm trying to find only outer borders of these circles. How can i accomplish that?
image 3
image 4
The problem is the flag cv2.RETR_EXTERNAL that you used in the function call. As described in the OpenCV documentation, this only returns the external contour.
Using the flag cv2.RETR_LIST you get all contours in the image. Since you try to detect rings, this list will contain the inner and the outer contour of these rings.
To filter the outer boundary of the circles, you could use cv2.contourArea() to find the larger of two overlapping contours.
I am not sure this is really what you expect nevertheless in case like this there is many way to help findContours to do its job.
Here is a way I use frequently.
Convert your image to gray
Ig = cv2.cvtColor(I,cv2.COLOR_BGR2GRAY)
Thresholding
The background and foreground values looklike quite uniform in term of colours but locally they are not so I apply an thresholding based on Otsu's method in order to binarise the intensities.
_,It = cv2.threshold(Ig,0,255,cv2.THRESH_OTSU)
Sobel magnitude
In order to extract only the contours I process the magnitude of the Sobel edges detector.
sx = cv2.Sobel(It,cv2.CV_32F,1,0)
sy = cv2.Sobel(It,cv2.CV_32F,0,1)
m = cv2.magnitude(sx,sy)
m = cv2.normalize(m,None,0.,255.,cv2.NORM_MINMAX,cv2.CV_8U)
thinning (optional)
I use the thinning function which is implemented in ximgproc.
The interest of the thining is to reduce the contours thickness to as less pixels as possible.
m = cv2.ximgproc.thinning(m,None,cv2.ximgproc.THINNING_GUOHALL)
Final Step findContours
_,contours,hierarchy = cv2.findContours(m,cv2.RETR_TREE,cv2.CHAIN_APPROX_SIMPLE)
disp = cv2.merge((m,m,m)
disp = cv2.drawContours(disp,contours,-1,hierarchy=hierarchy,color=(255,0,0))
Hope it help.
I think an approach based on SVM or a CNN might be more robust.
You can find an example here.
This one may also be interesting.
-EDIT-
I found a let say easier way to reach your goal.
Like previously after loading the image applying a threshold ensure that the image is binary.
By reversing the image using a bitwise not operation the contours become white over a black background.
Applying cv2.connectedComponentsWithStats return (among others) a label matrix in which each connected white region in the source has been assign a unique label.
Then applying findContours based on the labels it is possible give the external contours for every areas.
import numpy as np
import cv2
from matplotlib import pyplot as plt
I = cv2.imread('/home/smile/Downloads/ext_contours.png',cv2.IMREAD_GRAYSCALE)
_,I = cv2.threshold(I,0.,255.,cv2.THRESH_OTSU)
I = cv2.bitwise_not(I)
_,labels,stats,centroid = cv2.connectedComponentsWithStats(I)
result = np.zeros((I.shape[0],I.shape[1],3),np.uint8)
for i in range(0,labels.max()+1):
mask = cv2.compare(labels,i,cv2.CMP_EQ)
_,ctrs,_ = cv2.findContours(mask,cv2.RETR_EXTERNAL,cv2.CHAIN_APPROX_SIMPLE)
result = cv2.drawContours(result,ctrs,-1,(0xFF,0,0))
plt.figure()
plt.imshow(result)
P.S. Among the outputs return by the function findContours there is a hierachy matrix.
It is possible to reach the same result by analyzing that matrix however it is a little bit more complex as explain here.
Instead of finding contours, I would suggest applying the Hough circle transform using the appropriate parameters.
Finding contours poses a challenge. Once you invert the binary image the circles are in white. OpenCV finds contours both along the outside and the inside of the circle. Moreover since there are letters such as 'A' and 'B', contours will again be found along the outside of the letters and within the holes. You can find contours using the appropriate hierarchy criterion but it is still tedious.
Here is what I tried by finding contours and using hierarchy:
Code:
#--- read the image, convert to gray and obtain inverse binary image ---
img = cv2.imread('keypad.png', 1)
gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY)
_, binary = cv2.threshold(gray, 0, 255, cv2.THRESH_BINARY_INV|cv2.THRESH_OTSU)
#--- find contours ---
_, contours, hierarchy = cv2.findContours(binary, cv2.RETR_CCOMP, cv2.CHAIN_APPROX_NONE)
#--- copy of original image ---
img2 = img.copy()
#--- select contours having a parent contour and append them to a list ---
l = []
for h in hierarchy[0]:
if h[0] > -1 and h[2] > -1:
l.append(h[2])
#--- draw those contours ---
for cnt in l:
if cnt > 0:
cv2.drawContours(img2, [contours[cnt]], 0, (0,255,0), 2)
cv2.imshow('img2', img2)
For more info on contours and their hierarchical relationship please refer this
UPDATE
I have a rather crude way to ignore unwanted contours. Find the average area of all the contours in list l and draw those that are above the average:
Code:
img3 = img.copy()
a = 0
for j, i in enumerate(l):
a = a + cv2.contourArea(contours[i])
mean_area = int(a/len(l))
for cnt in l:
if (cnt > 0) & (cv2.contourArea(contours[cnt]) > mean_area):
cv2.drawContours(img3, [contours[cnt]], 0, (0,255,0), 2)
cv2.imshow('img3', img3)
You can select only the outer borders by this function:
def _select_contours(contours, hierarchy):
"""select contours of the second level"""
# find the border of the image, which has no father
father_i = None
for i, h in enumerate(hierarchy):
if h[3] == -1:
father_i = i
break
# collect its sons
new_contours = []
for c, h in zip(contours, hierarchy):
if h[3] == father_i:
new_contours.append(c)
return new_contours
Note that you should use cv2.RETR_TREE in cv2.findContours() to get the contours and hierarchy.

Extracting text from inside a circular border

I'm trying to develop a script using Python and OpenCV to detect some highlighted regions on a scanned instrumentation diagram and output text using Tesseract's OCR function. My workflow is first to detect the general vicinity of the region of interest, and then apply processing steps to remove everything aside from the blocks of text (lines, borders, noise). The processed image is then feed into Tesseract's OCR engine.
This workflow is works on about half of the images, but fails on the rest due to the text touching the borders. I'll show some examples of what I mean below:
Step 1: Find regions of interest by creating a mask using InRange with the color range of the highlighter.
Step 2: Contour regions of interest, crop and save to file.
--- Referenced code begins here ---
Step 3: Threshold image and apply Canny Edge Detection
Step 4: Contour the edges and filter them into circular shape using cv2.approxPolyDP and looking at ones with vertices greater than 8. Taking the first or second largest contour usually corresponds to the inner edge.
Step 5: Using masks and bitwise operations, everything inside contour is transferred to a white background image. Dilation and erosion is applied to de-noise the image and create the final image that gets fed into the OCR engine.
import cv2
import numpy as np
import pytesseract
pytesseract.pytesseract.tesseract_cmd = 'C:/Program Files (x86)/Tesseract-OCR/tesseract'
d_path = "Test images\\"
img_name = "cropped_12.jpg"
img = cv2.imread(d_path + img_name) # Reads the image
## Resize image before calculating contour
height, width = img.shape[:2]
img = cv2.resize(img,(2*width,2*height),interpolation = cv2.INTER_CUBIC)
img_orig = img.copy() # Makes copy of original image
img = cv2.cvtColor(img,cv2.COLOR_BGR2GRAY) # Convert to grayscale
# Apply threshold to get binary image and write to file
_, img = cv2.threshold(img,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)
# Edge detection
edges = cv2.Canny(img,100,200)
# Find contours of mask threshold
_, contours, hierarchy = cv2.findContours(edges, cv2.RETR_TREE, cv2.CHAIN_APPROX_SIMPLE)
# Find contours associated w/ polygons with 8 sides or more
cnt_list = []
area_list = [cv2.contourArea(c) for c in contours]
for j in contours:
poly_pts = cv2.approxPolyDP(j,0.01*cv2.arcLength(j,True),True)
area = cv2.contourArea(j)
if (len(poly_pts) > 8) & (area == max(area_list)):
cnt_list.append(j)
cv2.drawContours(img_orig, cnt_list, -1, (255,0,0), 2)
# Show contours
cv2.namedWindow('Show',cv2.WINDOW_NORMAL)
cv2.imshow("Show",img_orig)
cv2.waitKey()
cv2.destroyAllWindows()
# Zero pixels outside circle
mask = np.zeros(img.shape).astype(img.dtype)
cv2.fillPoly(mask, cnt_list, (255,255,255))
mask_inv = cv2.bitwise_not(mask)
a = cv2.bitwise_and(img,img,mask = mask)
wh_back = np.ones(img.shape).astype(img.dtype)*255
b = cv2.bitwise_and(wh_back,wh_back,mask = mask_inv)
res = cv2.add(a,b)
# Get rid of noise
kernel = np.ones((2, 2), np.uint8)
res = cv2.dilate(res, kernel, iterations=1)
res = cv2.erode(res, kernel, iterations=1)
# Show final image
cv2.namedWindow('result',cv2.WINDOW_NORMAL)
cv2.imshow("result",res)
cv2.waitKey()
cv2.destroyAllWindows()
When code works, these are the images that get outputted:
Working
However, in the instances where the text touches the circular border, the code assumes part of the text is part of the larger contour and ignores the last letter. For example:
Not working
Are there any processing steps that can help me bypass this problem? Or perhaps a different approach? I've tried using Hough Circle Transforms to try to detect the borders, but they're quite finicky and doesn't work as well as contouring.
I'm quite new to OpenCV and Python so any help would be appreciated.
If the Hough circle transform didn't work for you I think you're best option will be to approximate the boarder shape. The best method I know for that is: Douglas-Peucker algorithm which will make your contour simpler by reducing the perimeter on pics.
You can check this reference file from OpenCV to see the type of post processing you can apply to your boarder. They also mention Douglas-Peucker:
OpenCV boarder processing
Just a hunch. After OTSU thresholding. Erode and dilate the image. This will result in vanishing of very thin joints. The code for the same is below.
kernel = np.ones((5,5),np.uint8)
th3 = cv2.erode(th3, kernel,iterations=1)
th3 = cv2.dilate(th3, kernel,iterations=1)
Let me know how it goes. I have couple more idea if this did not work.

Circular contour detection in an image python opencv

I am trying to have the circle detected in the following image.
So I did color thresholding and finally got this result.
Because of the lines in the center being removed, the circle is split into many small parts, so if I do contour detection on this, it can only give me each contour separately.
But is there a way I can somehow combine the contours so I could get a circle instead of just pieces of it?
Here is my code for color thresholding:
blurred = cv2.GaussianBlur(img, (9,9), 9)
ORANGE_MIN = np.array((12, 182, 221),np.uint8)
ORANGE_MAX = np.array((16, 227, 255),np.uint8)
hsv_disk = cv2.cvtColor(blurred,cv2.COLOR_BGR2HSV)
disk_threshed = cv2.inRange(hsv_disk, ORANGE_MIN, ORANGE_MAX)
The task is much easier when performed with the red plane only.
I guess there was problem with the thresholds for color segmentation, So the idea here was to generate a binary mask. By inspection your region of interest seems to be brighter than the other regions of input image, so thresholding can simply be done on a grayScale image to simplify the context. Note: You may change this step as per your requirement. After satisfying with the threshold output, you may use cv2.convexHull() to get the convex shape of your contour.
Also keep in mind to select the largest contour and ignore the small contours. The following code can be used to generate the required output:
import cv2
import numpy as np
# Loading the input_image
img = cv2.imread("/Users/anmoluppal/Downloads/3xGG4.jpg")
# Converting the input image to grayScale
img_gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY)
# Thresholding the image to get binary mask.
ret, img_thresh = cv2.threshold(img_gray, 145, 255, cv2.THRESH_BINARY)
# Dilating the mask image
kernel = np.ones((3,3),np.uint8)
dilation = cv2.dilate(img_thresh,kernel,iterations = 3)
# Getting all the contours
_, contours, __ = cv2.findContours(dilation, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_NONE)
# Finding the largest contour Id
largest_contour_area = 0
largest_contour_area_idx = 0
for i in xrange(len(contours)):
if (cv2.contourArea(contours[i]) > largest_contour_area):
largest_contour_area = cv2.contourArea(contours[i])
largest_contour_area_idx = i
# Get the convex Hull for the largest contour
hull = cv2.convexHull(contours[largest_contour_area_idx])
# Drawing the contours for debugging purposes.
img = cv2.drawContours(img, [hull], 0, [0, 255, 0])
cv2.imwrite("./garbage.png", img)

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