So, im new to coding and im making a registration system for a fictional hospital, that gets the user name, the procedure they had and the date, after that it sum some days to it( to calculate return) and then write on a .txt file, but the write part is not working, how can i solve it? sorry that the prints and variables are on portuguese.
def cadastrar(arq, nomep , proc , x, y, z, w):
datas = datetime.strptime(w, '%Y-%m-%d')
l = 0
m = 0
n = 0
o = 0
p = 0
try:
a = open(arq, 'r+')
for linha in a:
dados = linha.split(';')
if dados[1] in ['Procedimento X']:
l = datas + \
timedelta(days = 15)
m = datas + \
timedelta(days = 152)
n = datas + \
timedelta(days = 304)
o = datas + \
timedelta(days = 456)
try:
a.write(f'{nomep};{proc};{x}-{y}-{z}\n;{l};{m};{n};{o}')
except:
print('\033[31mErro ao escrever.\033[m')
else:
print(f'\033[92m{nomep} foi cadastrado com sucesso.\033[m')
a.close()
finally:
print('')
I want it to write on the txt file but suddently it just stopped working and idk why.
Change
a = open(arq, 'r+')
to
a = open(arq, 'w+')
Related
def main_loop():
global errname, errtime, error_detail, conclusion
error_detail = ""
facts_all = {}
facts = []
buffer = 0
current_time = datetime.now()
while os.path.exists("C:\Winusr"):
print(paths["wintrace"])
try:
start_point = 0
old_size = os.path.getsize(paths["wintrace"])
while os.path.getsize(paths["wintrace"])>= old_size:
#fo = open(paths["wintrace"], "rb")
#fo.seek(start_point,1)
shutil.copyfile(paths["wintrace"], "C:\Winusr\wintrace1.log")
fo = open("C:\Winusr\wintrace1.log", "rb")
fo.seek(start_point, 1)
errtime = datetime(1900, 1, 1)
old_size = os.path.getsize(paths["wintrace"])
#start from here
for line in fo.readlines():
line = str(line.decode('ISO-8859-1'))
print(line)
if fnmatch.fnmatch(line, "*START DUMP LOG BUFFER*"):
buffer = 1
if fnmatch.fnmatch(line, "*END DUMP LOG BUFFER*"):
buffer = 0
if buffer == 1:
continue
facts_all = collect_facts(line,facts_all,key_string,key_value_dic)
for pattern in error_detect:
if fnmatch.fnmatch(line, pattern):
try:
err_type = df[df["Error Detect Keyword"] == pattern]["Err Type"].to_string(index=False).lstrip()
errname = df[df["Err Type"] == err_type]["Error Name"].tolist()[0].lstrip()
errtime = datetime.strptime(
datetime.fromtimestamp(os.path.getmtime(paths["wintrace"])).strftime("%Y-%m-%d") + " " + line[:8], "%Y-%m-%d %H:%M:%S") #"%d-%b-%Y %H:%M:%S"
#errtime = datetime.fromtimestamp(os.path.getmtime(paths["wintrace"])).strftime("%Y-%m-%d") + " " + line[:8]
#errtime = errtime.strftime('%Y-%m-%d %H:%M:%S')
product = re.findall(r"[/](.+?)[.]", paths["cur"])
product = product[0].split("/")[-1]
tester = tester_name(paths["cur"])
if len(facts_all) != 0:
facts.append(errname)
#idex = 9999
for fact, line in facts_all.items():
if fact in dic1[errname]:
error_detail = error_detail + line + '\n'
facts.append(fact)
print("err_detail1", error_detail)
if len(facts) != 1:
facts = list(set(facts))
conclusion = inference_engine(facts)
print("errtime", errtime)
print("current_time", current_time)
if conclusion != "cannot find solution for this error" and errtime > current_time:
solutions = sop2(errlist, errname, conclusion)
row = recording(tester, product, errname, errtime, error_detail, conclusion)
print("gg pop out GUI!!!")
#send_email(errname, errtime, tester, error_detail)
GUI(errname, errtime, error_detail, conclusion, solutions, row)
current_time = datetime.now()
workbook = xlrd.open_workbook(r"G:\expert system data\Machine Database.xls")
workbook1 = copy(workbook)
ws1 = workbook1.get_sheet(0)
style = xlwt.XFStyle()
style.num_format_str = 'yyyy-mm-dd hh:mm:ss'
ws1.write(row, 8, current_time, style)
workbook1.save(r"G:\expert system data\Machine Database.xls")
error_detail = ""
facts_all = {}
facts = []
error_detail = ""
facts_all = {}
facts = []
except:
continue
start_point = fo.tell()
fo.close()
except:
continue
else:
main_loop()
the paths["wintrace"] is ""C:\Winusr\Wintrace.log", i dont want it is open cause sometimes need to change its name or delete, i copy this file and open the copied one, but it still show it is open, can u help me check where it is opened? besides, i use "filepath = tkinter.filedialog.askopenfilename()", but dont think it will open the wintrace file.the error screenshot
everyone.
I have some problems with calculating gcskews in python.
My 2 major inputs are fasta file and bed file.
Bed file has columns of gn(0), gene_type(1), gene name(2), chromosome(3), strand(4), num(5), start(6).(These numbers are index numbers in python.) Then I am trying to use some functions which can calculate gcskews of sense and antisense strand from the start site of each gene. The window is 100bp and these are the functions.
import re
import sys
import os
# opening bed file
content= []
with open("gene_info.full.tsv") as new :
for line in new :
content.append(line.strip().split())
content = content[1:]
def fasta2dict(fil):
dic = {}
scaf = ''
seq = []
for line in open(fil):
if line.startswith(">") and scaf == '':
scaf = line.split(' ')[0].lstrip(">").replace("\n", "")
elif line.startswith(">") and scaf != '':
dic[scaf] = ''.join(seq)
scaf = line.split(' ')[0].lstrip(">").replace("\n", "")
seq = []
else:
seq.append(line.rstrip())
dic[scaf] = ''.join(seq)
return dic
dic_file = fasta2dict("full.fa")
# functions for gc skew
def GC_skew_up(strand, loc, seq, window = 100) : # need -1 for index
values_up = []
loc = loc - 1
if strand == "+" :
sp_up = seq[loc - window : loc]
g_up = sp_up.count('G') + sp_up.count('g')
c_up = sp_up.count('C') + sp_up.count('c')
try :
skew_up = (g_up - c_up) / float(g_up + c_up)
except ZeroDivisionError:
skew_up = 0.0
values_up.append(skew_up)
elif strand == "-" :
sp_up = seq[loc : loc + window]
g_up = sp_up.count('G') + sp_up.count('g')
c_up = sp_up.count('C') + sp_up.count('c')
try :
skew_up = (c_up - g_up) / float(g_up + c_up)
except ZeroDivisionError:
skew_up = 0.0
values_up.append(skew_up)
return values_up
def GC_skew_dw(strand, loc, seq, window = 100) :
values_dw = []
loc = loc - 1
if strand == "+" :
sp_dw = seq[loc : loc + window]
g_dw = sp_dw.count('G') + sp_dw.count('g')
c_dw = sp_dw.count('C') + sp_dw.count('c')
try :
skew_dw = (g_dw - c_dw) / float(g_dw + c_dw)
except ZeroDivisionError:
skew_dw = 0.0
values_dw.append(skew_dw)
elif strand == "-" :
sp_dw = seq[loc - window : loc]
g_dw = sp_dw.count('G') + sp_dw.count('g')
c_dw = sp_dw.count('C') + sp_dw.count('c')
try :
skew_dw = (c_dw - g_dw) / float(g_dw + c_dw)
except ZeroDivisionError:
skew_dw = 0.0
values_dw.append(skew_dw)
return values_dw
As I said, I want to calculate the gcskews for 100bp of strands from the start site of genes.
Therefore, I made codes that get the chromosome name from the bed file and get the sequence data from the Fasta file.
Then according to gene name and strand information, I expected that codes will find the correct start site and gcskew for 100bp window will be calculated.
However, when I run this code, gcskew of - strand is wrong but + strand is correct. (I got correct gcskew data and I used it.)
Gcskews are different from the correct data, but I don't know what is the problem.
Could anyone tell me what is the problem of this code?
Thanks in advance!
window = 100
gname = []
up = []
dw = []
for match in content :
seq_chr = dic_file[str(match[3])]
if match[4] == "+" :
strand = match[4]
new = int(match[6])
sen_up = GC_skew_up(strand, new, seq_chr, window = 100)
sen_dw = GC_skew_dw(strand, new, seq_chr, window = 100)
gname.append(match[2])
up.append(str(sen_up[0]))
dw.append(str(sen_dw[0]))
if match[4] == "-" :
strand = match[4]
new = int(match[6])
an_up = GC_skew_up(strand, new, seq_chr, window = 100)
an_dw = GC_skew_dw(strand, new, seq_chr, window = 100)
gname.append(match[2])
up.append(str(an_up[0]))
dw.append(str(an_dw[0]))
tot = zip(gname, up, dw)
I have a program that interfaces with another program to process data. The program I have written has three main parts (separated by lines of ### below). When I run the entire program, it does not work (specifically the second subprocess call doesn't execute and produce a summary file for which the third part of the program is responsible for dealing with). However, whenever I break them into three separate programs and run them in the terminal, everything is fine. Any tips or suggestions as to how to get this to run as one program?
#### part 1:
import glob
import subprocess
import os
import datetime
import matplotlib.pyplot as plt
import csv
import re
import ntpath
x = open('data.txt', 'w')
m = open('graphing_data.txt', 'w')
ckopuspath= '/Volumes/DAVIS/sfit-ckopus/ckopus'
command_init = 'sfit4Layer0.py -bv5 -fh'
subprocess.call(command_init.split(), shell=False)
for line in open('sfit4.ctl', 'r'): # write in later specific directory line
p = line.strip()
if p.startswith('band.1.nu_start'):
a,b = p.split('=')
b = float(b)
b = "{0:.3f}".format(b)
lowwav = b
lowwav = float(lowwav)
if p.startswith('band.1.nu_stop'):
a,b = p.split('=')
b = float(b)
b = "{0:.3f}".format(b)
highwav = b
highwav = float(highwav)
with open('/Volumes/DAVIS/calpy_em27_neu/spectra_out_demo/info.txt', 'rt') as infofile: # the info.txt file created by CALPY
for count, line in enumerate(infofile):
with open('t15asc.4', 'w') as t:
lat = re.search('Latitude of location:\s*([^;]+)', line, re.IGNORECASE).group(0)
lat = lat.split()
lat = lat[3]
lat = float(lat)
lon = re.search('Longitude of location:\s*([^;]+)', line, re.IGNORECASE).group(0)
lon = lon.split()
lon = lon[3]
lon = float(lon)
date = re.search('Time of measurement \(UTC\): ([^;]+)', line).group(0)
date = date.split()
yeardate = date[4]
yeardate = yeardate.split('-')
year = int(yeardate[0])
month = int(yeardate[1])
day = int(yeardate[2])
time = date[5]
time = time.split(':')
hour = int(time[0])
minute = int(time[1])
second = time[2]
second = second.split('.')
second = int(second[0])
dur = re.search('Duration of measurement \[s\]: ([^;]+)', line).group(0)
dur = dur.split()
dur = float(dur[4])
numpoints = re.search('Number of values of one scan:\s*([^;]+)', line, re.IGNORECASE).group(0)
numpoints = numpoints.split()
numpoints = float(numpoints[6])
fov = re.search('semi FOV \[rad\] :\s*([^;]+)', line, re.IGNORECASE).group(0)
fov = fov.split()
fov = fov[3]
fov = float(fov[1:])
sza = re.search('sun Azimuth \[deg\]:\s*([^;]+)', line, re.IGNORECASE).group(0)
sza = sza.split()
sza = float(sza[3])
snr = 0.0000
roe = 6396.2
res = 0.5000
calpy_path = '/Volumes/DAVIS/calpy_em27_neu/spectra_out_demo/140803/*' # the CALPY output files!
files1 = glob.glob(calpy_path)
with open(files1[count], 'r') as g:
ints = []
ints_count = 0
for line in g:
wave_no, intensity = [float(item) for item in line.split()]
if lowwav <= wave_no <= highwav:
ints.append(str(intensity))
ints_count = ints_count + 1
spacebw = (highwav - lowwav)/ ints_count
d = datetime.datetime(year, month, day, hour, minute, second)
t.write('{:>12.5f}{:>12.5f}{:>12.5f}{:>12.5f}{:>12.5f}'.format(sza,roe,lat,lon,snr)) # line 1
t.write("\n")
t.write('{:>10d}{:>5d}{:>5d}{:>5d}{:>5d}{:>5d}'.format(year,month,day,hour,minute,second)) # line 2
t.write("\n")
t.write( ('{:%Y/%m/%d %H:%M:%S}'.format(d)) + "UT Solar Azimuth:" + ('{:>6.3f}'.format(sza)) + " Resolution:" + ('{:>6.4f}'.format(res)) + " Duration:" + ('{:>6.2f}'.format(dur))) # line 3
t.write("\n")
t.write('{:>22.12f}{:>22.12f}{:>22.12e}{:>15d}'.format(lowwav,highwav,spacebw,ints_count)) # line 4
t.write("\n")
t.write('\n'.join(map(str, ints)) + '\n')
######################################## part 2:
command_two = 'sfit4Layer0.py -bv5 -fs'
subprocess.call(command_two.split(), shell=False) #writes the summary file
######################################## part 3
infile = '/Volumes/DAVIS/calpy_em27_neu/spectra_out_demo/summary'
lines = open(infile, 'r').readlines()
line_number = 0
line4= lines[line_number + 3]
variables = line4.split(" ")
sample = variables[1]
time = variables[2]
Z = variables[3]
A = variables[4]
D = variables[5]
R = variables[6]
P = variables[7]
V = variables[8]
E = variables[9]
x.write('{0} {1} {2} {3} '.format(sample, time, Z, A))
time = time[:-2]
numofgas = lines[line_number + 5]
numofgas = int(numofgas.strip())
x.write(str(numofgas))
count2 = 0
while count2 < numofgas:
gasinfo = lines[line_number + 7 + count2]
data = gasinfo.split()
gasnum = data[0]
gasname = data[1]
IFPRF = data[2]
apprcol = data[3]
retcol = data[4]
x.write(' {0} {1}'.format(gasname, retcol))
m.write('{0},{1}\n'.format(time, retcol))
count2 = count2 + 1
line17 = lines[line_number + 10 + count2]
print(numofgas)
params = line17.split()
bandstart = params[1]
bandstop = params[2]
space = params[3]
nptsb = params[4]
pmax = params[5]
fovdia = params[6]
meansnr = params[7]
x.write(' {0} {1} {2} {3} '.format(bandstart, bandstop, nptsb, meansnr))
line21 = lines[line_number + 14 + count2]
info = line21.split()
fitrms = info[0]
chi2 = info[1]
dofsall = info[2]
dofstrg = info[3]
iter = info[4]
maxxiter = info[5]
x.write('{0} {1} {2} {3} {4}'.format(fitrms, chi2, dofsall, dofstrg, iter))
x.write('\n')
x.close()
m.close()
This is my code. The problem is that the output looks like this
2015-06-03 19:32:11.225085
{'2015-01-21-20:56:45.mp3': 1}{'negative': -2}{'2015-01-15-21:28:23.mp3': 1}
i want to be like a dictionary.... like this one below so i can read it back as a dictionary and remove the keys from the first subset sum and go on output a second on and so on until no other subset sum exists...
2015-06-03 19:32:11.225085
{'2015-01-21-20:56:45.mp3': 1, 'negative': -2, '2015-01-15-21:28:23.mp3': 1}
Any ideas?
thanx in advanced
import os, sys,re,gzip, pickle
from itertools import combinations
import json
from datetime import datetime
mp3folder = raw_input('Please copy paste the mp3s path:')
lowerin = input('Please enter your total playlist time in NEGATIVE seconds and hit ENTER:')
r = {}
drk = os.listdir(mp3folder)
drifiles = list(drk)
r = dict.fromkeys(drifiles, 0)
for key in r.keys():
print ('Please enter the duration of...')
print(key)
r[key] = input('in seconds and hit ENTER:')
r['negative'] = lowerin
d = {}
neg = 0
pos = 0
dates = datetime.now()
dates = str(dates)
f = open("dict.txt",'ab')
f.write('\n'+dates+'\n')
f.close()
for (w,v) in r.iteritems():
if v > 0: pos += v
else: neg += v
sums = [0] * (pos - neg + 1)
for (w,v) in r.iteritems():
s = sums[:]
if not s[v - neg]: s[v - neg] = (w,)
for (i, w2) in enumerate(sums):
if w2 and not s[i + v]:
s[i + v] = w2 + (w,)
sums = s
if s[-neg]:
for x in s[-neg]:
d = dict([(x, r[x])])
file('dict.txt','a'+'\n').write(repr(d))
break
f = open('dict.txt','r')
filedata = f.read()
f.close()
newdata = filedata.replace("}{",", ")
f = open('lexiko.txt','w')
f.write(newdata)
f.close()
di = eval(open("lexiko.txt").read())
print di
this will do it
The Code Below I wrote takes input from a sample file which contains First and Last names. Then it converts those names to sample emails. For some reason the Script keeps printing the same Last name over and over.
namess.txt looks like this:
firstname,lastname
CODE:
import os, re, time, getpass, linecache
Original = os.path.join(os.path.expanduser('~'), 'Desktop','namess.txt')
File = os.path.join(os.path.expanduser('~'), 'Desktop','output.txt')
badNames = []
Names = []
def RemCommas():
outfile = open(os.path.join('C:\\', 'Users', getpass.getuser(), 'Desktop','output.txt'),'w')
Filedata = open(Original).read()
outfile.write(re.sub(',', ' ', Filedata))
outfile.close()
def ClassNum():
count = 6
Year = int(time.strftime('%Y'))
Class = str((Year - 2013) + 6)
return Class
def ReadStoreFile():
i = 0
OpenFile = open(File)
LenFile = len(OpenFile.readlines())
while i < LenFile:
i += 1
badNames.append(linecache.getline(File, i))
def CleanNames():
i = 0
while i < len(badNames):
cleaned = badNames[i].rstrip()
Names.append(cleaned)
i += 1
def NamePrint():
Interns = 'makchessclub.org'
arrayname = []
i = 0
j = 0
m = 0
while m < len(Names):
Name = Names[m]
Name = Name.lower()
InternName = Name[0] + Name[1]
#------------Checking for space and first name--
while i < len(Name):
if Name[i] == ' ':
i = Name.index(' ')
break;
i += 1
#---------------adding last name in an array----
Namelen = len(Name) - (i+1)
while j < Namelen:
arrayname.append(Name[i+1])
j += 1
i += 1
#---------------Final Name Print----------------
Lastname = ''.join(arrayname)
#print arrayname
#Lastname = Lastname.strip(' ')
#print InternName + Lastname + ClassNum() + Interns
file = open('C:\\Users\\username\\Desktop\\emails.txt', 'a')
file.write(InternName + Lastname + ClassNum() + Interns + '\n')
file.close()
m += 1
RemCommas()
ReadStoreFile()
CleanNames()
NamePrint()
print ''
os.system('pause')
The reason the last name doesn't change is because you are not resetting arrayname in your loop. You keep appending names to it, and the program picks the first one. So you should put your arrayname = [] after the while m < len(Names):
I guess this what you are trying to do:
import os
import re
import time
def create_mails(input_path, output_path, year, addr):
with open(input_path, 'r') as data:
mail = re.sub(r'(\w+)\s*,\s*(\w+)\n?', r'\1\g<2>%s%s\n' % (year, addr), data.read())
with open(output_path, 'w') as output:
output.write(mail.lower())
print 'Mail addresses generated and saved to', output_path
Demo:
create_mails(
os.path.join(os.path.expanduser('~'), 'Desktop', 'namess.txt'),
os.path.join(os.path.expanduser('~'), 'Desktop', 'output.txt'),
str(int(time.strftime('%Y')) - 2013 + 6),
'#makchessclub.org'
)
If namess.txt is something like this:
First, Last
John,Doe
Spam, Ham
Cabbage, egg
Then output.txt is going to be like this:
firstlast6#makchessclub.org
johndoe6#makchessclub.org
spamham6#makchessclub.org
cabbageegg6#makchessclub.org