I am trying to cimport NumPy into a Python 2.7 shell from a .pyx file, but it keeps giving me the same error:
I made a .pyx file called numpyx just to see if it was part of the bigger code I was running, the file contains:
cimport numpy as np
a = np.arange(0,10)
print 'a= ',a
I get the following error every time:
Traceback (most recent call last):
File "<pyshell#82>", line 1, in <module>
import numpyx
File "C:\Users\Scott\AppData\Roaming\Python\Python27\site-packages\pyximport \pyximport.py", line 335, in load_module
self.pyxbuild_dir)
File "C:\Users\Scott\AppData\Roaming\Python\Python27\site-packages\pyximport\pyximport.py", line 183, in load_module
so_path = build_module(name, pyxfilename, pyxbuild_dir)
File "C:\Users\Scott\AppData\Roaming\Python\Python27\site-packages\pyximport\pyximport.py", line 167, in build_module
reload_support=pyxargs.reload_support)
File "C:\Users\Scott\AppData\Roaming\Python\Python27\site-packages\pyximport\pyxbuild.py", line 85, in pyx_to_dll
dist.run_commands()
File "C:\Python27\lib\distutils\dist.py", line 953, in run_commands
self.run_command(cmd)
File "C:\Python27\lib\distutils\dist.py", line 972, in run_command
cmd_obj.run()
File "C:\Users\Scott\AppData\Roaming\Python\Python27\site-packages\Cython\Distutils\build_ext.py", line 135, in run
_ build_ext.build_ext.run(self)
File "C:\Python27\lib\distutils\command\build_ext.py", line 340, in run
self.build_extensions()
File "C:\Users\Scott\AppData\Roaming\Python\Python27\site-packages\Cython\Distutils\build_ext.py", line 143, in build_extensions
self.build_extension(ext)
File "C:\Python27\lib\distutils\command\build_ext.py", line 499, in build_extension
depends=ext.depends)
File "C:\Python27\lib\distutils\ccompiler.py", line 624, in compile
self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)
File "C:\Python27\lib\distutils\cygwinccompiler.py", line 166, in _compile
raise CompileError, msg
ImportError: Building module failed: ["CompileError: command 'gcc' failed with exit status 1\n"]
I don't understand why it won't work, since it compiles .pyx files fine as long as cimport isn't in them.
If anyone could shed some light on this it would be great!
Well the function your looking for is available in the python package.
(I find no reference to linspace in numpy.pxd)
I usually do something along these lines:
import numpy as np
cimport numpy as cnp
def foo(double x):
cdef cnp.ndarray[cnp.float64_t, ndim=1] y = np.linspace(0, 10, 11)
# do whatever
return y
Related
I'm attempting to use Py2exe to create a Python executable out of my program. The program definitely works and I've made sure all the libraries it uses are up to date, but when I attempt to run the command "python setup.py py2exe" to finish it up, I get an error I'm unfamiliar with.
The full output is below:
running py2exe
C:\Program Files\WindowsApps\PythonSoftwareFoundation.Python.3.9_3.9.1264.0_x64__qbz5n2kfra8p0\lib\site-packages\setuptools\distutils_patch.py:25: UserWarning: Distutils was imported before Setuptools. This usage is discouraged and may exhibit undesirable behaviors or errors. Please use Setuptools' objects directly or at least import Setuptools first.
warnings.warn(
Traceback (most recent call last):
File "C:\Users\user\OneDrive\Desktop\intern\pdf\setup.py", line 11, in
setup(console=[{ "script": "tca_script.py"}],
File "C:\Program Files\WindowsApps\PythonSoftwareFoundation.Python.3.9_3.9.1264.0_x64__qbz5n2kfra8p0\lib\distutils\core.py", line 148, in setup
dist.run_commands()
File "C:\Program Files\WindowsApps\PythonSoftwareFoundation.Python.3.9_3.9.1264.0_x64__qbz5n2kfra8p0\lib\distutils\dist.py", line 966, in run_commands
self.run_command(cmd)
File "C:\Program Files\WindowsApps\PythonSoftwareFoundation.Python.3.9_3.9.1264.0_x64__qbz5n2kfra8p0\lib\distutils\dist.py", line 985, in run_command
cmd_obj.run()
File "C:\Users\user\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.9_qbz5n2kfra8p0\LocalCache\local-packages\Python39\site-packages\py2exe\distutils_buildexe.py", line 192, in run
self._run()
File "C:\Users\user\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.9_qbz5n2kfra8p0\LocalCache\local-packages\Python39\site-packages\py2exe\distutils_buildexe.py", line 272, in _run
builder.analyze()
File "C:\Users\user\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.9_qbz5n2kfra8p0\LocalCache\local-packages\Python39\site-packages\py2exe\runtime.py", line 172, in analyze
mf.import_package(modname)
File "C:\Users\user\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.9_qbz5n2kfra8p0\LocalCache\local-packages\Python39\site-packages\py2exe\mf34.py", line 84, in import_package
self.import_package("%s.%s" % (name, modname))
File "C:\Users\user\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.9_qbz5n2kfra8p0\LocalCache\local-packages\Python39\site-packages\py2exe\mf34.py", line 84, in import_package
self.import_package("%s.%s" % (name, modname))
File "C:\Users\user\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.9_qbz5n2kfra8p0\LocalCache\local-packages\Python39\site-packages\py2exe\mf34.py", line 84, in import_package
self.import_package("%s.%s" % (name, modname))
File "C:\Users\user\AppData\Local\Packages\PythonSoftwareFoundation.Python.3.9_qbz5n2kfra8p0\LocalCache\local-packages\Python39\site-packages\py2exe\mf34.py", line 71, in import_package
package = self.modules[name]
KeyError: 'pandas.tests.io.excel'
Any help would be greatly appreciated.
I'm trying to compile python script to exe.
My script - hello.py:
print("hello")
My setup.py:
from distutils.core import setup
import py2exe, sys, os
sys.argv.append('py2exe')
setup(
name = 'hello',
description = 'hello script',
version = '1.0',
options = {'py2exe': {'bundle_files': 1, 'compressed': True,'dist_dir': ".",'dll_excludes':['w9xpopen.exe']}},
console = [{'script': r"hello.py"}],
zipfile = None,
)
I run:
py -3 setup.py install
The error:
py -3 setup.py install
running install
running build
running install_egg_info
Removing C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\Lib\site-packages\hello-1.0-py3.7.egg-info
Writing C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\Lib\site-packages\hello-1.0-py3.7.egg-info
running py2exe
Traceback (most recent call last):
File "setup.py", line 19, in <module>
zipfile = None,
File "C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\lib\distutils\core.py", line 148, in setup
dist.run_commands()
File "C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\lib\distutils\dist.py", line 966, in run_commands
self.run_command(cmd)
File "C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\lib\distutils\dist.py", line 985, in run_command
cmd_obj.run()
File "C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\lib\site-packages\py2exe\distutils_buildexe.py", line 188, in run
self._run()
File "C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\lib\site-packages\py2exe\distutils_buildexe.py", line 267, in _run
builder.analyze()
File "C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\lib\site-packages\py2exe\runtime.py", line 160, in analyze
self.mf.import_hook(modname)
File "C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\lib\site-packages\py2exe\mf3.py", line 120, in import_hook
module = self._gcd_import(name)
File "C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\lib\site-packages\py2exe\mf3.py", line 274, in _gcd_import
return self._find_and_load(name)
File "C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\lib\site-packages\py2exe\mf3.py", line 357, in _find_and_load
self._scan_code(module.__code__, module)
File "C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\lib\site-packages\py2exe\mf3.py", line 388, in _scan_code
for what, args in self._scan_opcodes(code):
File "C:\Users\alonat\AppData\Local\Programs\Python\Python37-32\lib\site-packages\py2exe\mf3.py", line 417, in _scan_opcodes
yield "store", (names[oparg],)
IndexError: tuple index out of range
Do you know how to resolve this error?
py2exe seems to support up to Python 3.4 (thanks Michael Butscher)
However, there are other libraries such as Pyinstaller which work just fine, and are compatible with a variety of Python versions (from Python 2.7 to 3.5+)
Check it out, it's actually really easy :)
https://pyinstaller.readthedocs.io/en/stable/
I am trying to use pypy. My python scripts are using numpy. So when I used pypy 1.9.0 it showed me this:
"The 'numpy' module of PyPy is in-development and not complete. "
ImportError: The '`numpy' module` of PyPy is in-development and not complete. To try it out anyway, you can either import from 'numpypy', or just write 'import numpypy' first in your program and then import from 'numpy' as usual.
So I used import numpypy and then ran my script. I got this error:
File "customecode.py", line 97, in dist_new
dlat = radians(p2[..., 0] - p1[..., 0])
TypeError: expected integer, got Ellipsis object
I couldn't find anything on this kind of error. Although script is running fine when I use python. So my guess is that may be pypy still don't support everything which is there on numpy.
I found this link on pypy-numpy update. So I install pypy 2.2.1
http://morepypy.blogspot.in/2013/11/numpy-status-update.html
In this link following instructions are given for installing numpy for pypy:
git clone https://bitbucket.org/pypy/numpy.git
cd numpy
pypy setup.py install
after running pypy setup.py installI got this type error:
Traceback (most recent call last):
File "app_main.py", line 51, in run_toplevel
File "setup.py", line 239, in <module>
setup_package()
File "setup.py", line 231, in setup_package
setup(**metadata)
File "/home/administrator/numpy/numpy/distutils/core.py", line 169, in setup
return old_setup(**new_attr)
File "/usr/lib/pypy/lib-python/2.7/distutils/core.py", line 152, in setup
dist.run_commands()
File "/usr/lib/pypy/lib-python/2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/lib/pypy/lib-python/2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/home/administrator/numpy/numpy/distutils/command/install.py", line 57, in run
r = old_install.run(self)
File "/usr/lib/pypy/lib-python/2.7/distutils/command/install.py", line 613, in run
self.run_command('build')
File "/usr/lib/pypy/lib-python/2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/pypy/lib-python/2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/home/administrator/numpy/numpy/distutils/command/build.py", line 39, in run
old_build.run(self)
File "/usr/lib/pypy/lib-python/2.7/distutils/command/build.py", line 127, in run
self.run_command(cmd_name)
File "/usr/lib/pypy/lib-python/2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/pypy/lib-python/2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/home/administrator/numpy/numpy/distutils/command/build_src.py", line 153, in run
self.build_sources()
File "/home/administrator/numpy/numpy/distutils/command/build_src.py", line 164, in build_sources
self.build_library_sources(*libname_info)
File "/home/administrator/numpy/numpy/distutils/command/build_src.py", line 299, in build_library_sources
sources = self.generate_sources(sources, (lib_name, build_info))
File "/home/administrator/numpy/numpy/distutils/command/build_src.py", line 386, in generate_sources
source = func(extension, build_dir)
File "numpy/core/setup.py", line 678, in get_mathlib_info
st = config_cmd.try_link('int main(void) { return 0;}')
File "/usr/lib/pypy/lib-python/2.7/distutils/command/config.py", line 248, in try_link
self._check_compiler()
File "/home/administrator/numpy/numpy/distutils/command/config.py", line 46, in _check_compiler
old_config._check_compiler(self)
File "/usr/lib/pypy/lib-python/2.7/distutils/command/config.py", line 103, in _check_compiler
customize_compiler(self.compiler)
File "/usr/lib/pypy/lib-python/2.7/distutils/ccompiler.py", line 44, in customize_compiler
cpp = cc + " -E" # not always
TypeError: unsupported operand type(s) for +: 'NoneType' and 'str'
I want to use pypy 2.2.1 with whatever development of numpy provided there. Any help with the installation of numpy for pypy is appreciated.
In PyPy 2.2.1, the file lib-python/2.7/distutils/ccompiler.py does not contain any function called customize_compiler() and line 44 is not like that. My guess is that your version of PyPy's standard library has been tweaked by your Linux distribution in a way that makes it crash in your particular case.
I can only suggest that you try to get the "official" PyPy 2.2.1 and compare the results.
I have a .py file that creates a GUI, which runs another script once I give it some information. I'm trying to make a .exe file from this GUI file using py2exe, but I've been having trouble.
Exception: Seems not to be an exe-file
If anyone who has experience with py2exe and has encountered this message before, could you explain to me why it's not working, and what I could do to fix it? Thanks in advance.
EDIT: My setup.py looks like this:
from distutils.core import setup
import py2exe
setup(console=['test_gui.py'])
I run this code through the command prompt like this:
python setup.py py2exe
And the traceback is as follows:
Traceback (most recent call last):
File "setup.py", line 4, in <module>
setup(console=['test_gui.py'])
File "C:\Python26\lib\distutils\core.py", line 152, in setup
dist.run_commands()
File "C:\Python26\lib\distutils\dist.py", line 975, in run_commands
self.run_command(cmd)
File "C:\Python26\lib\distutils\dist.py", line 995, in run_command
cmd_obj.run()
File "C:\Python26\Lib\site-packages\py2exe\build_exe.py", line 243, in run
self._run()
File "C:\Python26\Lib\site-packages\py2exe\build_exe.py", line 305, in _run
dlls = self.find_dlls(extensions)
File "C:\Python26\Lib\site-packages\py2exe\build_exe.py", line 389, in find_dlls
self.dll_excludes)
File "C:\Python26\Lib\site-packages\py2exe\build_exe.py", line 1064, in find_d
ependend_dlls
bin_depends(loadpath, images + [sys.executable], excludes_use)
File "C:\Python26\Lib\site-packages\py2exe\build_exe.py", line 1441, in bin_de
pends
if isSystemDLL(dll):
File "C:\Python26\Lib\site-packages\py2exe\build_exe.py", line 1498, in isSyst
emDLL
raise Exception, "Seems not to be an exe-file"
Exception: Seems not to be an exe-file
When I attempt to do the following on a production server:
$ sudo -u vretnet ../bin/python setup.py test -q
It will show the following error, how should I fix this?
Or could it be that my development.ini went wrong?
Traceback (most recent call last):
File "setup.py", line 34, in <module>
paster_plugins=['pyramid'],
File "/opt/python3.2.3/lib/python3.2/distutils/core.py", line 148, in setup
dist.run_commands()
File "/opt/python3.2.3/lib/python3.2/distutils/dist.py", line 917, in run_commands
self.run_command(cmd)
File "/opt/python3.2.3/lib/python3.2/distutils/dist.py", line 936, in run_command
cmd_obj.run()
File "/home/vretnet/env/lib/python3.2/site-packages/distribute-0.6.34-py3.2.egg/setuptools/command/test.py", line 138, in run self.with_project_on_sys_path(self.run_tests)
File "/home/vretnet/env/lib/python3.2/site-packages/distribute-0.6.34-py3.2.egg/setuptools/command/test.py", line 118, in with_project_on_sys_path
func()
File "/home/vretnet/env/lib/python3.2/site-packages/distribute-0.6.34-py3.2.egg/setuptools/command/test.py", line 164, in run_tests
testLoader = cks
File "/opt/python3.2.3/lib/python3.2/unittest/main.py", line 123, in __init__
self.parseArgs(argv)
File "/opt/python3.2.3/lib/python3.2/unittest/main.py", line 191, in parseArgs
self.createTests()
File "/opt/python3.2.3/lib/python3.2/unittest/main.py", line 198, in createTests
self.module)
File "/opt/python3.2.3/lib/python3.2/unittest/loader.py", line 132, in loadTestsFromNames
suites = [self.loadTestsFromName(name, module) for name in names]
File "/opt/python3.2.3/lib/python3.2/unittest/loader.py", line 132, in <listcomp>
suites = [self.loadTestsFromName(name, module) for name in names]
File "/opt/python3.2.3/lib/python3.2/unittest/loader.py", line 91, in loadTestsFromName
module = __import__('.'.join(parts_copy))
File "/home/vretnet/env/ECommerce/ecommerce/__init__.py", line 1, in <module>
from pyramid.config import Configurator
File "/home/vretnet/env/lib/python3.2/site-packages/pyramid-1.4-py3.2.egg/pyramid/config/__init__.py", line 10, in <module>
from webob.exc import WSGIHTTPException as WebobWSGIHTTPException
File "/home/vretnet/env/lib/python3.2/site-packages/WebOb-1.2.3-py3.2.egg/webob/exc.py", line 1115, in <module>
from paste import httpexceptions
File "/home/vretnet/env/lib/python3.2/site-packages/Paste-1.7.5.1-py3.2.egg/paste/httpexceptions.py", line 634
except HTTPException, exc:
^
SyntaxError: invalid syntax
It is Python 3, you should write as:
except HTTPException as exc:
This took me a couple of days to figure out ><. But make sure you install the correct mod_wsgi version. You can install that uses python2 or one that uses python3.
If you install the python3 wsgi mod and use virtualenv2 to build your python environment you will get packages that aren't written for python3.
you just use this patch bellow.
$ 2to3 example.py
https://docs.python.org/2.7/library/2to3.html#to3-python-2-3
translate code from python2 to python3 automatically and recursively.