Read file and copy to standard output. - python

I'm trying to write a python program that will read input and copy it to standard output (with no alterations). I've been told that it needs to operate as a Python version of the Unix cat function. If a file cannot be opened, an error message needs to be printed, and then the program needs to continue processing any additional files. I am a complete beginner, and have tried my best to scrape something together with my limited knowledge. Here is what I have so far:
from sys import argv, stdout, stdin, stderr
if len(argv) == 1:
try:
stdout.write(raw_input(' ') + '\n')
except:
stderr.write ('sorry' + '\n')
quit()
else:
for filename in argv[1:]:
try:
filehandle + open(filename)
except IOError:
stderr.write('Sorry, could not open', filename + '\n')
continue
f = filehandle.read()
stdout.write(f)
I am not quite sure where to go from here.. does anyone have any advice/am I on the right track even a little bit? Please and thank you!

This function will copy the specified file to the console line by line (in case you later on decide to give it the ability to use the -n command line option of cat)
def catfile(fn):
with open(fn) as f:
for line in f:
print line,
It can be called with the filename once you have established the file exists.

Related

How to fix "Tail: Write Error: Broken Pipe" in running linux command in Python?

I am trying to print line-by-line per file that is inside a list.
At the end of each line of the file, it needs to check if the term ".sh" is in it or not.
I am getting the error
"Tail: Write error: "Broken Pipe"
Expected result:
Read each from list
Check each line of the file if the term ".sh" comes in it at the end of the line of the file.
Prints if it finds the ".sh"
This is what I have atm:
# Modules
import os
from pprint import pprint
# Files in list
dirlist = ['test.txt','test2.txt','test3.txt']
# Loop to read the file in list
for x in range (len(dirlist)):
print ("Output of Filename: " + dirlist[x]
# Variable to save the last 3 characters of the line
last3 = os.popen ("cat " + dirlist[x] + " | tail -c 3")
print last3
# Read file
f = open(dirlist[x], "r")
# Loop to check if the keyword is the same as last3
for l in f:
if last3 in l:
print ("FOUND IT!")
else:
print ("NOT IN IT!")
Outcome:
#Nic
[![enter image description here][3]][3]
I suggest that you use with environment with native python code instead of open and os.popen
Here is an example
# Files in list
dirlist = ['test.txt','test2.txt','test3.txt']
# Loop to read the file in list
for x in dirlist:
print ("Output of Filename: " + x)
with open(x) as f
lines=f.readlines()
for line in lines: #here you print each line
print (line)
if '.sh' in lines[-1:]: #check if .sh is in the last line
print("found it")
else:
print("didnt find it")
os.popen returns a file object, not a string.
See: Assign output of os.system to a variable and prevent it from being displayed on the screen
tail (actually stdio) gives the "Broken Pipe" error when it tries to write output but there's nobody around to read it. (More specifically, when it receives SIGPIPE.)
If you're going to launch a child process with popen, you need to finish reading from the pipe before your program exits.
In your case, you should probably use subprocess.run rather than a bare os.popen.
Or, better yet, don't use a subprocess for simple file operations! Just do them in native Python code, and it will be much simpler.
With the help Of #Nic Wanavit and Daniel Pyrden, I finally fixed it.
I've put the if/else inside the loop, otherwise it would check all the lines for the .sh instead of per line.
and I've put parenthesis inside the ".sh" section and that worked!
However, I did not do it in the last 3 characters, because the -1: wasn't working for me for some reason.
# Files in List
dirlist = ['test.txt', 'test2.txt', 'test3.txt']
# Loop to read the file in list
for x in dirlist:
print ("Output of filename: "+ x)
with open(x) as f:
lines = f.readlines()
for line lines:
print ("Line in file: " + line)
if (".sh" in line):
print ("FOUND IT")
else:
print ("not found it \n")
Result

python readlines not working during incron

I'm trying to call a python script through incron:
/data/alucard-ops/drop IN_CLOSE_WRITE /data/alucard-ops/util/test.py $#/$#
but I cant seem to read from the file passed. Here is the script:
#!/usr/bin/env /usr/bin/python3
import os,sys
logfile = '/data/alucard-ops/log/'
log = open(logfile + 'test.log', 'a')
log.write(sys.argv[1] + "\n")
log.write(str(os.path.exists(sys.argv[1])) + "\n")
datafile = open(sys.argv[1], 'r')
log.write('Open\n')
data = datafile.readlines()
log.write("read\n")
datafile.close()
The output generated by the script:
/data/alucard-ops/drop/nsco-20180219.csv
True
Open
It seems to stop at the readlines() call. I dont see any errors in the syslog.
Update: It seems that i can use a subprocess to cat the file and it retrieves the contents. But, when i decode it, data.decode('utf-8') I'm back to nothing in the variable.
I ended up using watchdog instead.

Directing print output to a .txt file

Is there a way to save all of the print output to a txt file in python? Lets say I have the these two lines in my code and I want to save the print output to a file named output.txt.
print ("Hello stackoverflow!")
print ("I have a question.")
I want the output.txt file to to contain
Hello stackoverflow!
I have a question.
Give print a file keyword argument, where the value of the argument is a file stream. The best practice is to open the file with the open function using a with block, which will ensure that the file gets closed for you at the end of the block:
with open("output.txt", "a") as f:
print("Hello stackoverflow!", file=f)
print("I have a question.", file=f)
From the Python documentation about print:
The file argument must be an object with a write(string) method; if it is not present or None, sys.stdout will be used.
And the documentation for open:
Open file and return a corresponding file object. If the file cannot be opened, an OSError is raised.
The "a" as the second argument of open means "append" - in other words, the existing contents of the file won't be overwritten. If you want the file to be overwritten instead at the beginning of the with block, use "w".
The with block is useful because, otherwise, you'd need to remember to close the file yourself like this:
f = open("output.txt", "a")
print("Hello stackoverflow!", file=f)
print("I have a question.", file=f)
f.close()
You can redirect stdout into a file "output.txt":
import sys
sys.stdout = open('output.txt','wt')
print ("Hello stackoverflow!")
print ("I have a question.")
Another method without having to update your Python code at all, would be to redirect via the console.
Basically, have your Python script print() as usual, then call the script from the command line and use command line redirection. Like this:
$ python ./myscript.py > output.txt
Your output.txt file will now contain all output from your Python script.
Edit:
To address the comment; for Windows, change the forward-slash to a backslash.
(i.e. .\myscript.py)
Use the logging module
def init_logging():
rootLogger = logging.getLogger('my_logger')
LOG_DIR = os.getcwd() + '/' + 'logs'
if not os.path.exists(LOG_DIR):
os.makedirs(LOG_DIR)
fileHandler = logging.FileHandler("{0}/{1}.log".format(LOG_DIR, "g2"))
rootLogger.addHandler(fileHandler)
rootLogger.setLevel(logging.DEBUG)
consoleHandler = logging.StreamHandler()
rootLogger.addHandler(consoleHandler)
return rootLogger
Get the logger:
logger = init_logging()
And start logging/output(ing):
logger.debug('Hi! :)')
Another Variation can be... Be sure to close the file afterwards
import sys
file = open('output.txt', 'a')
sys.stdout = file
print("Hello stackoverflow!")
print("I have a question.")
file.close()
Suppose my input file is "input.txt" and output file is "output.txt".
Let's consider the input file has details to read:
5
1 2 3 4 5
Code:
import sys
sys.stdin = open("input", "r")
sys.stdout = open("output", "w")
print("Reading from input File : ")
n = int(input())
print("Value of n is :", n)
arr = list(map(int, input().split()))
print(arr)
So this will read from input file and output will be displayed in output file.
For more details please see https://www.geeksforgeeks.org/inputoutput-external-file-cc-java-python-competitive-programming/
Be sure to import sys module. print whatever you want to write and want to save. In the sys module, we have stdout, which takes the output and stores it. Then close the sys.stdout . This will save the output.
import sys
print("Hello stackoverflow!" \
"I have a question.")
sys.stdout = open("/home/scilab/Desktop/test.txt", "a")
sys.stdout.close()
One can directly append the returned output of a function to a file.
print(output statement, file=open("filename", "a"))

Python file copy exception catching

I have a txt file called test.txt with 4 lines in it. I want to copy lines containing the word 'exception' into a new file from command line argument. I have managed this far. But I also want to exception handle this for IO error. That is if from the command line, somebody misspells the word test.txt, it will throw an exception. This is my current code. Please help! I'm a beginner. Presently, if I misspell it intentionally, it is not showing the error message I intend it to show.
import sys
def Cat(filename):
try:
f = open(filename, 'rU')
for line in f:
print (line),
return 3
except IOError:
print('\nIO error!!', filename)
def main():
f1 = open(sys.argv[1])
f2 = open(sys.argv[2], 'w')
for line in f1:
if 'exception' in line:
f2.write(line)
if __name__ == '__main__':
main()
First check if source file exists and readable -
if not (os.path.exists(file1) and os.access(file1, os.R_OK)):
print "file1 does not exists or not readable"
sys.exit(1)
else:
//good to go
and then handle writing of destination file with try except block.
You need to put the open() inside a try-except block, just as you did in Cat().
Currently, you are not calling Cat(), and the open() in main() is not inside a try-except block.
Since you said you are a beginner in Python I'll assume this a sort of "learning code". So, I won't tell you anything about the design. Also, you should do what #NPE says too.
You can try this in your main function in order to reach your goal:
def main():
filename = open(sys.argv[1])
if filename != "test.txt":
raise Exception("Here goes the message error you want to show")
f2 = open(sys.argv[2], 'w')
for line in f1:
if 'exception' in line:
f2.write(line)
You forgot to call Cat()
before
f2 = open(sys.argv[2], 'w')
Cat(f1)
for line in f1:
and in the Cat function you will need to raise exception to stop the execution
print('\nIO error!!', filename)
raise IOError('Invalid filename')

Python non-specific write exception

Currently teaching myself Python, and learning file I/O by writing a script to both read from and add text to an existing file. The script runs up until I call the write() method, at which point it throws out a non-specific exception - this is the traceback:
File "test.py", line 13, in <module>
f.write(txt)
IOError: [Errno 0] Error
My code:
from sys import argv
script, filename = argv
f = open(filename, 'a+')
print("The contents of %s are:") % filename
print f.read()
txt = raw_input("What would you like to add? ")
f.write(txt)
print("The new contents are:")
print f.read()
f.close()
My environment is Python 2.7.3 in Win7, PowerShell, and Notepad++.
What is causing this? How would I fix it? In my understanding, the a+ access mode should allow me to both read and append to the file. Changing the access mode to r+ yields the same exception.
Clarifications:
I have an existing text file (a.txt) with a single word in it that I pass as an argument to the script, like so:
python test.py a.txt
I am under an admin account in Windows.
Results:
At the minimum, adding two seek() commands fixes the issue - detailed in the answer post.
A problem when one tries to add a text of little size: it remains in the buffer, that keeps the text before the real writing is done after receiving more data.
So, to be sure to write really, do as it is described in the doc concerning os.fsync() and flush()
By the way, it is better to use the with statement.
And it's still more better to use binary mode. In your case, there shouldn't be a problem because you just add text after the reading and just use seek(o,o) . But when one wants to move correctly the file's pointer into the bytes of the file, it is absolutely necessary to use binary mode [ the 'b' in open(filename, 'rb+') ]
I personnaly never use 'a+', I've never understood what are its effects.
from sys import argv
from os import fsync
script, filename = argv
with open(filename, 'rb+') as f:
print("The contents of %s are:") % filename
print f.read()
f.seek(0,2)
txt = raw_input("What would you like to add? ")
f.write(txt)
f.flush()
fsync(f.fileno())
f.seek(0,0)
print("The new contents are:")
print f.read()
For some reason print f.read() doesn't work for me on OS X when you have opened the file in a+ mode.
On Max OS X, changing the open mode to r+ and then adding a f.seek(0) line before the second read makes it work. Sadly, this doesn't help windows.
This is the working code on Mac OS:
from sys import argv
script, filename = argv
f = open(filename, 'r+')
print("The contents of %s are:") % filename
print f.read()
txt = raw_input("What would you like to add? ")
f.write(txt)
print("The new contents are:")
f.seek(0)
print f.read()
f.close()
This is the only way I could get it to work on windows 7:
from sys import argv
script, filename = argv
f = open(filename, 'r')
print("The contents of %s are:") % filename
print f.read()
f.close()
txt = raw_input("What would you like to add? ")
f = open(filename, 'a')
f.write(txt)
f.close()
f = open(filename, 'r')
print("The new contents are:")
print f.read()
f.close()
Which seems super hacky. This should also work on Mac OS X too.

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