What is the most efficient way to trace markups in a string? - python

This question may have been asked in a different way, if so please point it to me. I just couldn't find it among my search results.
I would like to parse text for mark-ups, like those here on SO.
eg. * some string for bullet list
eg. *some string* for italic text
eg. &some string& for a URL
eg. &some string&specific url& for URL different from string
etc.
I can think of two ways to go about processing a string to find out special mark-up sequences:
a. I could proceed in a character-centric way, i.e. parsing the string looking for sequences 1, then 2 etc. That however seems to be inefficient as it would have to parse the string multiple times.
b. It seems better to process the string character by character and keep a memory of special characters and their position. If the memory matches a special sequence as above, then the special characters are replaced by HTML in the string. I'm not really sure whether that's a better idea however, nor am I sure as to how one should implement it.
What is the best way to go about this? How about Regular Expressions? Does it follow pattern a or b? Is there a third option?
P.S. I am using Python. Python example most appreciated.

You're essentially trying to implement a lexical analyser or 'lexer'. You can try searching 'lexer', 'parser', 'markup' for further reading material. [Edit: I may mean "parser", not "lexer". A lexer is a part of a parser.]
Parsers are commonly implemented using regular expressions as part of the solution, but there's a bit more to it than that.
If you're doing this for Markdown specifically, are you sure you don't want to use an existing Markdown parser/lexer? There are some very fast and well-tested Markdown parsers already in existence.
Sidenote: please try not to roll your own markup syntax - there are dozens of plain-text markup languages already. Pick one you like and use it. Wikipedia formatting, Markdown, and others come to mind. There are ready-made tools for parsing these.

Regular expressions, of course! If still haven't done so, learn it. After you are done, you will find it hard to imagine how you got along without it. The samples you show are simple with regular expressions. For example, an asterisk, then a space then a word is expressed as:
\*\s\w+
Nothing else but regular expressions.

Related

Regex to split tags from non-tag string [duplicate]

There is no day on SO that passes without a question about parsing (X)HTML or XML with regular expressions being asked.
While it's relatively easy to come up with examples that demonstrates the non-viability of regexes for this task or with a collection of expressions to represent the concept, I could still not find on SO a formal explanation of why this is not possible done in layman's terms.
The only formal explanations I could find so far on this site are probably extremely accurate, but also quite cryptic to the self-taught programmer:
the flaw here is that HTML is a Chomsky Type 2 grammar (context free
grammar) and RegEx is a Chomsky Type 3 grammar (regular expression)
or:
Regular expressions can only match regular languages but HTML is a
context-free language.
or:
A finite automaton (which is the data structure underlying a regular
expression) does not have memory apart from the state it's in, and if
you have arbitrarily deep nesting, you need an arbitrarily large
automaton, which collides with the notion of a finite automaton.
or:
The Pumping lemma for regular languages is the reason why you can't do
that.
[To be fair: the majority of the above explanation link to wikipedia pages, but these are not much easier to understand than the answers themselves].
So my question is: could somebody please provide a translation in layman's terms of the formal explanations given above of why it is not possible to use regex for parsing (X)HTML/XML?
EDIT: After reading the first answer I thought that I should clarify: I am looking for a "translation" that also briefely explains the concepts it tries to translate: at the end of an answer, the reader should have a rough idea - for example - of what "regular language" and "context-free grammar" mean...
Concentrate on this one:
A finite automaton (which is the data structure underlying a regular
expression) does not have memory apart from the state it's in, and if
you have arbitrarily deep nesting, you need an arbitrarily large
automaton, which collides with the notion of a finite automaton.
The definition of regular expressions is equivalent to the fact that a test of whether a string matches the pattern can be performed by a finite automaton (one different automaton for each pattern). A finite automaton has no memory - no stack, no heap, no infinite tape to scribble on. All it has is a finite number of internal states, each of which can read a unit of input from the string being tested, and use that to decide which state to move to next. As special cases, it has two termination states: "yes, that matched", and "no, that didn't match".
HTML, on the other hand, has structures that can nest arbitrarily deep. To determine whether a file is valid HTML or not, you need to check that all the closing tags match a previous opening tag. To understand it, you need to know which element is being closed. Without any means to "remember" what opening tags you've seen, no chance.
Note however that most "regex" libraries actually permit more than just the strict definition of regular expressions. If they can match back-references, then they've gone beyond a regular language. So the reason why you shouldn't use a regex library on HTML is a little more complex than the simple fact that HTML is not regular.
The fact that HTML doesn't represent a regular language is a red herring. Regular expression and regular languages sound sort of similar, but are not - they do share the same origin, but there's a notable distance between the academic "regular languages" and the current matching power of engines. In fact, almost all modern regular expression engines support non-regular features - a simple example is (.*)\1. which uses backreferencing to match a repeated sequence of characters - for example 123123, or bonbon. Matching of recursive/balanced structures make these even more fun.
Wikipedia puts this nicely, in a quote by Larry Wall:
'Regular expressions' [...] are only marginally related to real regular expressions. Nevertheless, the term has grown with the capabilities of our pattern matching engines, so I'm not going to try to fight linguistic necessity here. I will, however, generally call them "regexes" (or "regexen", when I'm in an Anglo-Saxon mood).
"Regular expression can only match regular languages", as you can see, is nothing more than a commonly stated fallacy.
So, why not then?
A good reason not to match HTML with regular expression is that "just because you can doesn't mean you should". While may be possible - there are simply better tools for the job. Considering:
Valid HTML is harder/more complex than you may think.
There are many types of "valid" HTML - what is valid in HTML, for example, isn't valid in XHTML.
Much of the free-form HTML found on the internet is not valid anyway. HTML libraries do a good job of dealing with these as well, and were tested for many of these common cases.
Very often it is impossible to match a part of the data without parsing it as a whole. For example, you might be looking for all titles, and end up matching inside a comment or a string literal. <h1>.*?</h1> may be a bold attempt at finding the main title, but it might find:
<!-- <h1>not the title!</h1> -->
Or even:
<script>
var s = "Certainly <h1>not the title!</h1>";
</script>
Last point is the most important:
Using a dedicated HTML parser is better than any regex you can come up with. Very often, XPath allows a better expressive way of finding the data you need, and using an HTML parser is much easier than most people realize.
A good summary of the subject, and an important comment on when mixing Regex and HTML may be appropriate, can be found in Jeff Atwood's blog: Parsing Html The Cthulhu Way.
When is it better to use a regular expression to parse HTML?
In most cases, it is better to use XPath on the DOM structure a library can give you. Still, against popular opinion, there are a few cases when I would strongly recommend using a regex and not a parser library:
Given a few of these conditions:
When you need a one-time update of your HTML files, and you know the structure is consistent.
When you have a very small snippet of HTML.
When you aren't dealing with an HTML file, but a similar templating engine (it can be very hard to find a parser in that case).
When you want to change parts of the HTML, but not all of it - a parser, to my knowledge, cannot answer this request: it will parse the whole document, and save a whole document, changing parts you never wanted to change.
Because HTML can have unlimited nesting of <tags><inside><tags and="<things><that><look></like></tags>"></inside></each></other> and regex can't really cope with that because it can't track a history of what it's descended into and come out of.
A simple construct that illustrates the difficulty:
<body><div id="foo">Hi there! <div id="bar">Bye!</div></div></body>
99.9% of generalized regex-based extraction routines will be unable to correctly give me everything inside the div with the ID foo, because they can't tell the closing tag for that div from the closing tag for the bar div. That is because they have no way of saying "okay, I've now descended into the second of two divs, so the next div close I see brings me back out one, and the one after that is the close tag for the first". Programmers typically respond by devising special-case regexes for the specific situation, which then break as soon as more tags are introduced inside foo and have to be unsnarled at tremendous cost in time and frustration. This is why people get mad about the whole thing.
A regular language is a language that can be matched by a finite state machine.
(Understanding Finite State machines, Push-down machines, and Turing machines is basically the curriculum of a fourth year college CS Course.)
Consider the following machine, which recognizes the string "hi".
(Start) --Read h-->(A)--Read i-->(Succeed)
\ \
\ -- read any other value-->(Fail)
-- read any other value-->(Fail)
This is a simple machine to recognize a regular language; Each expression in parenthesis is a state, and each arrow is a transition. Building a machine like this will allow you to test any input string against a regular language -- hence, a regular expression.
HTML requires you to know more than just what state you are in -- it requires a history of what you have seen before, to match tag nesting. You can accomplish this if you add a stack to the machine, but then it is no longer "regular". This is called a Push-down machine, and recognizes a grammar.
A regular expression is a machine with a finite (and typically rather small) number of discrete states.
To parse XML, C, or any other language with arbitrary nesting of language elements, you need to remember how deep you are. That is, you must be able to count braces/brackets/tags.
You cannot count with finite memory. There may be more brace levels than you have states! You might be able to parse a subset of your language that restricts the number of nesting levels, but it would be very tedious.
A grammar is a formal definition of where words can go. For example, adjectives preceed nouns in English grammar, but follow nouns en la gramática española.
Context-free means that the grammar works universally in all contexts. Context-sensitive means there are additional rules in certain contexts.
In C#, for example, using means something different in using System; at the top of files, than using (var sw = new StringWriter (...)). A more relevant example is the following code within code:
void Start ()
{
string myCode = #"
void Start()
{
Console.WriteLine (""x"");
}
";
}
There's another practical reason for not using regular expressions to parse XML and HTML that has nothing to do with the computer science theory at all: your regular expression will either be hideously complicated, or it will be wrong.
For example, it's all very well writing a regular expression to match
<price>10.65</price>
But if your code is to be correct, then:
It must allow whitespace after the element name in both start and end tag
If the document is in a namespace, then it should allow any namespace prefix to be used
It should probably allow and ignore any unknown attributes appearing in the start tag (depending on the semantics of the particular vocabulary)
It may need to allow whitespace before and after the decimal value (again, depending on the detailed rules of the particular XML vocabulary).
It should not match something that looks like an element, but is actually in a comment or CDATA section (this becomes especially important if there is a possibility of malicious data trying to fool your parser).
It may need to provide diagnostics if the input is invalid.
Of course some of this depends on the quality standards you are applying. We see a lot of problems on StackOverflow with people having to generate XML in a particular way (for example, with no whitespace in the tags) because it is being read by an application that requires it to be written in a particular way. If your code has any kind of longevity then it's important that it should be able to process incoming XML written in any way that the XML standard permits, and not just the one sample input document that you are testing your code on.
So others have gone and given brief definitions for most of these things, but I don't really think they cover WHY normal regex's are what they are.
There are some great resources on what a finite state machine is, but in short, a seminal paper in computer science proved that the basic grammar of regex's (the standard ones, used by grep, not the extended ones, like PCRE) can always be manipulated into a finite-state machine, meaning a 'machine' where you are always in a box, and have a limited number of ways to move to the next box. In short, you can always tell what the next 'thing' you need to do is just by looking at the current character. (And yes, even when it comes to things like 'match at least 4, but no more than 5 times', you can still create a machine like this) (I should note that note that the machine I describe here is technically only a subtype of finite-state machines, but it can implement any other subtype, so...)
This is great because you can always very efficiently evaluate such a machine, even for large inputs. Studying these sorts of questions (how does my algorithm behave when the number of things I feed it gets big) is called studying the computational complexity of the technique. If you're familiar with how a lot of calculus deals with how functions behave as they approach infinity, well, that's pretty much it.
So whats so great about a standard regular expression? Well, any given regex can match a string of length N in no more than O(N) time (meaning that doubling the length of your input doubles the time it takes: it says nothing about the speed for a given input) (of course, some are faster: the regex * could match in O(1), meaning constant, time). The reason is simple: remember, because the system has only a few paths from each state, you never 'go back', and you only need to check each character once. That means even if I pass you a 100 gigabyte file, you'll still be able to crunch through it pretty quickly: which is great!.
Now, its pretty clear why you can't use such a machine to parse arbitrary XML: you can have infinite tags-in-tags, and to parse correctly you need an infinite number of states. But, if you allow recursive replaces, a PCRE is Turing complete: so it could totally parse HTML! Even if you don't, a PCRE can parse any context-free grammar, including XML. So the answer is "yeah, you can". Now, it might take exponential time (you can't use our neat finite-state machine, so you need to use a big fancy parser that can rewind, which means that a crafted expression will take centuries on a big file), but still. Possible.
But lets talk real quick about why that's an awful idea. First of all, while you'll see a ton of people saying "omg, regex's are so powerful", the reality is... they aren't. What they are is simple. The language is dead simple: you only need to know a few meta-characters and their meanings, and you can understand (eventually) anything written in it. However, the issue is that those meta-characters are all you have. See, they can do a lot, but they're meant to express fairly simple things concisely, not to try and describe a complicated process.
And XML sure is complicated. It's pretty easy to find examples in some of the other answers: you can't match stuff inside comment fields, ect. Representing all of that in a programming language takes work: and that's with the benefits of variables and functions! PCRE's, for all their features, can't come close to that. Any hand-made implementation will be buggy: scanning blobs of meta-characters to check matching parenthesis is hard, and it's not like you can comment your code. It'd be easier to define a meta-language, and compile that down to a regex: and at that point, you might as well just take the language you wrote your meta-compiler with and write an XML parser. It'd be easier for you, faster to run, and just better overall.
For more neat info on this, check out this site. It does a great job of explaining all this stuff in layman's terms.
Don't parse XML/HTML with regex, use a proper XML/HTML parser and a powerful xpath query.
theory :
According to the compiling theory, XML/HTML can't be parsed using regex based on finite state machine. Due to hierarchical construction of XML/HTML you need to use a pushdown automaton and manipulate LALR grammar using tool like YACC.
realLife©®™ everyday tool in a shell :
You can use one of the following :
xmllint often installed by default with libxml2, xpath1 (check my wrapper to have newlines delimited output
xmlstarlet can edit, select, transform... Not installed by default, xpath1
xpath installed via perl's module XML::XPath, xpath1
xidel xpath3
saxon-lint my own project, wrapper over #Michael Kay's Saxon-HE Java library, xpath3
or you can use high level languages and proper libs, I think of :
python's lxml (from lxml import etree)
perl's XML::LibXML, XML::XPath, XML::Twig::XPath, HTML::TreeBuilder::XPath
ruby nokogiri, check this example
php DOMXpath, check this example
Check: Using regular expressions with HTML tags
In a purely theoretical sense, it is impossible for regular expressions to parse XML. They are defined in a way that allows them no memory of any previous state, thus preventing the correct matching of an arbitrary tag, and they cannot penetrate to an arbitrary depth of nesting, since the nesting would need to be built into the regular expression.
Modern regex parsers, however, are built for their utility to the developer, rather than their adherence to a precise definition. As such, we have things like back-references and recursion that make use of knowledge of previous states. Using these, it is remarkably simple to create a regex that can explore, validate, or parse XML.
Consider for example,
(?:
<!\-\-[\S\s]*?\-\->
|
<([\w\-\.]+)[^>]*?
(?:
\/>
|
>
(?:
[^<]
|
(?R)
)*
<\/\1>
)
)
This will find the next properly formed XML tag or comment, and it will only find it if it's entire contents are properly formed. (This expression has been tested using Notepad++, which uses Boost C++'s regex library, which closely approximates PCRE.)
Here's how it works:
The first chunk matches a comment. It's necessary for this to come first so that it will deal with any commented-out code that otherwise might cause hang ups.
If that doesn't match, it will look for the beginning of a tag. Note that it uses parentheses to capture the name.
This tag will either end in a />, thus completing the tag, or it will end with a >, in which case it will continue by examining the tag's contents.
It will continue parsing until it reaches a <, at which point it will recurse back to the beginning of the expression, allowing it to deal with either a comment or a new tag.
It will continue through the loop until it arrives at either the end of the text or at a < that it cannot parse. Failing to match will, of course, cause it to start the process over. Otherwise, the < is presumably the beginning of the closing tag for this iteration. Using the back-reference inside a closing tag <\/\1>, it will match the opening tag for the current iteration (depth). There's only one capturing group, so this match is a simple matter. This makes it independent of the names of the tags used, although you could modify the capturing group to capture only specific tags, if you need to.
At this point it will either kick out of the current recursion, up to the next level or end with a match.
This example solves problems dealing with whitespace or identifying relevant content through the use of character groups that merely negate < or >, or in the case of the comments, by using [\S\s], which will match anything, including carriage returns and new lines, even in single-line mode, continuing until it reaches a
-->. Hence, it simply treats everything as valid until it reaches something meaningful.
For most purposes, a regex like this isn't particularly useful. It will validate that XML is properly formed, but that's all it will really do, and it doesn't account for properties (although this would be an easy addition). It's only this simple because it leaves out real world issues like this, as well as definitions of tag names. Fitting it for real use would make it much more of a beast. In general, a true XML parser would be far superior. This one is probably best suited for teaching how recursion works.
Long story short: use an XML parser for real work, and use this if you want to play around with regexes.

Regular expression to match python method

Is there a python regex which will generically match a method definition (not just the declaration but also the method body) inside a python code file?
I did my share of googling but only found something similar for Java. Python is different w.r.t. to the way scopes are entered through indentation rather than accolades. What makes this problem hard is the fact that indentation may drop inside the method body (i.e. blank lines, multiline strings, comments).
I also looked for DOM parsers but basically they're all aimed at XML or HTML.
Finally I am looking into introspection (How can I get the source code of a Python function?) but I still wonder if there is a nicer way for code analysis without execution.
EDIT: the question receives a bunch of downvotes but I think it's actually a valid and specific programming question. I elaborated the question a bit.
Err, you don't want to use regexes to parse Python. The 'nicer way for code analysis without execution' is to use the Python standard library parser and/or ast modules. Look under the heading Python Language Services, e.g. https://docs.python.org/2/library/language.html

Replacement using multiple regexes or a bigger one in Python

I've switched to Python pretty recently and I'm interested to clean up a very big number of web pages (around 12k) (but can be considered just as easily text files) by removing some particular tags or some other string patterns. For this I'm using the re.sub(..) function in Python.
My question is if it's better (from the efficiency point of view) to create one big regular expression that matches more of my patterns or call the function several times with smaller and simpler regular expressions.
To exemplify, is it better to use something like
re.sub(r"<[^<>]*>", content)
re.sub(r"some_other_pattern", content)
or
re.sub(r"<[^<>]*>|some_other_pattern",content)
Of course, for the sake of exemplifying the previous patterns are really simple and I haven't compiled them here, but in my real-life scenario I will.
LE: The question is not related to the HTML nature of the files, but to the behavior of Python when dealing with multiple regex patterns.
Thanks!
Keep it simple.
I would say that you are safer using smaller Regexes to parse through this stuff. At least that way if it behaves abnormally, you don't have to go digging to find which particular section of the massive Regex is behaving strangely. Providing you have good logging of the replacements you do, it would be trivial to determine the source of the problem, should one arise.
You don't want to run into this
Speaking generally, "sequential" and "parallel" application is not the same and might produce different results, because sequential replacements can affect each other.
As to performance I guess one expression will perform better, but that's just a guess. I personally prefer to keep then complex and use "verbose" mode for readability sake.
I understand your additional comment regarding "its the non-HTML parts I'm cleaning up". Because of the possibility of a latter RE finding and replacing content that a earlier RE replaced, you'd be better off using the "alternative" operator and using a single RE.
Also, consider using BeautifulSoup to load and examine your HTML files. This will assist in finding the appropriate parts of your text with far less risk of capturing some HTML construct when you were just intending on on replacing some text.

Parsing user expression for formatting errors

User provides a string containing a Python expression : "a==(1,1) and {b==2 or c==foo}".
I am trying to write a parser that checks the following rules:
There needs to be a whitespace before and after a logical expression (or or and)
There needs to be a whitespace before and after curly braces
There should be NO whitespace within an expression (a ==(1,1) is invalid)
I found that "parser" module but I am not sure I understand it.
Establishing all the rules through multiple regular expressions (reading the string char by char and making sure if satisfies the rules) is very tedious.
What is the most elegant way to tackle this problem?
The most elegant way I'd say is to use something like pyparsing, a real parser combined with "pythonic" ease of use.
It may be a bit of overkill for small projects, but it isn't too hard to get started and will allow for plenty of growth in the syntax. Software requirements always seem to grow in one direction so I'd recommend giving it a try.

Ruby Regex vs Python Regex

Are there any real differences between Ruby regex and Python regex?
I've been unable to find any differences in the two, but may have missed something.
The last time I checked, they differed substantially in their Unicode support. Ruby in 1.9 at least has some very limited Unicode support. I believe one or two Unicode properties might be supported by now. Probably the general categories and maybe the scripts were the two I'm thinking of.
Python has less and more Unicode support at the same time. Python does seem to make it possible to meet the requirements of RL1.2a "Compatability Properties" from UTS#18 on Unicode Regular Expressions.
That said, there is a really rather nice Python library out there by Matthew Barnett (mrab) that finally adds a couple of Unicode properties to Python regexes. He supports the two most important ones: the general categories, and the script properties. It has some other intriguing features as well. It deserves some good publicity.
I don't think either of Ruby or Python support Unicode all that terribly well, although more and more gets done every day. In particular, however, neither meets even the barebones Level 1 requirement for Unicode Regular Expressions cited above. For example, RL1.2 requires that at least 11 properties be supported: General_Category, Script, Alphabetic, Uppercase, Lowercase, White_Space, Noncharacter_Code_Point, Default_Ignorable_Code_Point, ANY, ASCII, and ASSIGNED.
I think Python only lets you get to some of those, and only in a roundabout way. Of course, there are many, many other properties beyond these 11.
When you’re looking for Unicode support, there's more than just UTS#10 on Regular Expressions of course, although that is the one that matters most to this question and neither Ruby nor Puython are Level 1 compliant. Other very important aspects of Unicode include UAX#15, UAX#14, UTS#18, UAX#11, UAX#29, and of course the crucial UAX#44. Python has libraries for at least a couple of those, I know. I don't know that they're standard.
But when it comes to regular expression support, um, there are richer alternatives than just those two, you know. :)
I like the /pattern/ syntax in Ruby, inspired from Perl, for regular expressions. Python's re.compile("pattern") is not really elegant for me. The syntatic sugar in Ruby and the fact that regular expressions are a separate re module in Python, makes me lean towards Ruby when it comes to Regular Expressions.
Apart from this, I don't see much of a difference from a normal Regular Expression programming perspective. Both the languages have pretty comprehensive and mostly similar RE support. There might be performance differences ( Python traditionally has has better performance ) and also Python has greater unicode regular expressions support.
If the question is only about regex's: neither. Use Perl.
You should choose between those languages based on the other non-regex issues that you are trying to solve and the community support in that language that is nearby your field of endeavor.
If you are truly only picking a language based on regex support -- choose Perl...
Ruby's Regexp#match method is equivalent to Python's re.search(), not re.match(). re.search() and Regexp#match look for the first match anywhere in a string. re.match() looks for a match only at the beginning of a string.
To perform the equivalent of re.match(), a Ruby regular expression will need to start with a ^, indicating matching the beginning of the string.
To perform the equivalent of Regexp#match, a Python regular expression will need to start with .*, indicating matching zero or more characters.
The regular expression libraries for Ruby and Python are developed by two completely independent teams. Even if they are identical now (and I wouldn't be certain they are), there's no guarantee that they won't diverge sometime in the future.
The safest position is to assume they're different now, and assume they will continue to be different in the future.

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