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I'm interested to learn if there's a general consensus around using one language or environment for building physics-based computational models of batteries?
The modelling typically involves mathematically representing electrochemical, mechanical and thermal phenomena, solving partial differential equations and outputting plots of different variables in two and three dimensions.
So far, I've seen various academic research groups using MATLAB, but from other questions here, I can see that Fortran and Python have been suggested for relatively generic physics modelling. (See here: https://goo.gl/3ACddi)
I have a preference for a free (as in beer & speech) environment, wherever possible, but I recognise that some proprietary environments may have built-in toolboxes that are useful. Additionally, I would like the environment to allow the code to be easily parallelized so that it can run across many cores.
This is a broad question, but I'll share what I've experienced so far. Maybe it's of some use. Keep in mind that this is all my personal option.
MATLAB: It's widely used in academic environments. One reason is that Mathworks is following a smart business strategy where educational licenses are very cheap compared to the retail prize, thus many students and professors get used to MATLAB, even if there might be something better for them out there.
MATLAB has the advantage of being very easy to code. It will often take you a short time to get the first prototype of your code running. This comes at the expense of performance (compared to C/C++ and Python, which are often a bit faster than MATLAB). One of the downsides is that Matlab was not meant to compete with C/C++ and the like. You don't even have namespaces in matlab. Writing frameworks in matlab is therefore a whole lot more tiresome (if not impossible) and inefficient than writing one in C/C++. For instance if you create a function in your workspace called max which does absolutely nothing, you have no way to call Matlab's built in max function as long as yours is in the workspace.
C++: I'm studying engineering and here C++ is the favourite choice when it comes to physical simulations. Compared to other languages it's really fast. And since the programmer is responsible for memory management, he or she can get the last 10% bit of performance by writing efficient and case specific code for handling memory. There's also a ton of Open Source libraries out there, for example Eigen which is a library for Matrix and Vector calculation.
C: Some people (hello Linus) are convinced, that C++ is not a good language and prefer the plain C since it is a bit faster and the library "bloat" (in C++ coming from STD, Boost and the likes) is smaller. More arguments against C++ are that it seduces the programmer into creating classes for every little thing and use Polymorphism out of laziness. Both things can have a negative impact on performance, but if it makes it worth refusing to work with C++ at all is up to you to decide. As a sidenote: The complete Linux Kernel is written in C, not C++ and many tools like GIT are also written in plain C.
Python: Another language suitable for rapid prototyping since you don't need to compile a lot and the syntax is optimized to be easy and intuitive to use. Debuggers are not necessary since you can simply use the Interpreter to check out different variables and their values, much like in matlab. But contrary to Matlab Python also allows you to create objects with methods and everything like C++. (I know that Matlab recently added classes, but I refuse to say it's equivalent to C++/Python). Python is also widely used for academic purposes. There are open source libraries for Machine Learning, Artificial Intelligence and everything. There are also libraries which allow you to use Fractions without approximations. I.e. 1/6 is stored as two numbers, numerator and denominator, and not as a double. In the open source community people are putting a great effort into copying many features Matlab has over to Python, which is why you'll find many open source enthusiasts using it.
You see, some languages are good for rapid prototyping, meaning for scenarios where you want to get a proof of concept. MATLAB is useful since you don't have to compile anything and you can quickly visualize results. Python is also worth noting for rapid prototyping. But once you need to deploy the code on actual hardware or want to sell a finished product with user interface and everything, you'd probably go with something like C/C++ or Python, but not Matlab.
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Closed 11 years ago.
For a paper I want to argue why I have used Python for the implementation of my algorithm. Besides the typical arguments that it is fast -using suitable libraries- and it is easy to implement the algorithm with it, I thought maybe there are some big HPC projects that are using it.
Does anyone know a famous project that uses Python for large parallel calculations, maybe with a paper which I can cite?
To be honest, as great a language as python is, it wouldn't be a suitable environment for scientific computing and in particular high performance computing, if those libraries weren't available. So you can see python as one pieces of a larger puzzle - much as MATLAB can be.
The two key reasons to use python for scientific or high-performance computing can then be said to be because of the convenient interfaces to software packages written in other languages, or because you need fast turn around on a project. Commonly, both issues arise at the time.
The classic example of this is the paper "Feeding a Large-scale Physics Application to Python", by David M. Beazley which combines performance intensive C++ with python using SWIG
If you're looking for something very current, there is a new paper, "A New Modelling System for Seasonal Streamflow Forecasting Service of the Bureau of Meteorology, Australia", by Daehyok Shin et al., that due to be presented at MODSIM2011. I saw the first author speak at the Melbourne Python Users Group about how ipython was used being used as a mechanism for bridging high performance fortran models and HDF5 data in such a way that even non-programmers could make effective contributions to a larger scientific program.
Check out the Python success stories page on Python.org.
Blender is written in Python which is quite impressive for what it can do. If you're not impressed by testing it, you should watch some of the shorts people have made using it. Not as impressive, Ubuntu Software Center and BitTorrent are written in Python. Battlefield 2 uses a good chunk of Python
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Closed 11 years ago.
I need to build a heavy duty molecular dynamics simulator. I am wondering if python+numpy is a good choice. This will be used in production, so I wanted to start with a good language. I am wondering if I should rather start with a functional language like eg.scala. Do we have enough library support for scientific computation in scala? Or any other language/paradigm combination you think is good - and why. If you had actually built something in the past and are talking from experience, please mention it as it will help me with collecting data points.
thanks much!
The high performing MD implementations tend to be decidedly imperative (as opposed to functional) with big arrays of data trumping object-oriented design. I've worked with LAMMPS, and while it has its warts, it does get the job done. A perhaps more appealing option is HOOMD, which has been optimized from the beginning for Nvidia GPUs with CUDA. HOOMD doesn't have all the features of LAMMPS, but the interface seems a bit nicer (it's scriptable from Python) and it's very high performance.
I've actually implemented my own MD code a couple times (Java and Scala) using a high level object oriented design, and have found disappointing performance compared to the popular MD implementations that are heavily tuned and use C++/CUDA. These days, it seems few scientists write their own MD implementations, but it is useful to be able to modify existing ones.
I believe that most highly performant MD codes are written in native languages like Fortran, C or C++. Modern GPU programming techniques are also finding favour more recently.
A language like Python would allow for much more rapid development that native code. The flip side of that is that the performance is typically worse than for compiled native code.
A question for you. Why are you writing your own MD code? There are many many libraries out there. Can't you find one to suit your needs?
Why would you do this? There are many good, freely available, molecular dynamics packages out there you could use: LAMMPS, Gromacs, NAMD, HALMD all come immediately to mind (along with less freely available ones like CHARMM, AMBER, etc.) Modifying any of these to suit your purpose is going to be vastly easier than writing your own, and any of these packages, with thousands of users and dozens of contributors, are going to be better than whatever you'd write yourself.
Python+numpy is going to be fine for prototyping, but it's going to be vastly slower (yes, even with numpy linked against fast libraries) than C/C++/Fortran, which is what all the others use. Unless you're using GPU, in which case all the hard work is done in kernels written in C/C++ anyway.
Another alternative if you want to use Python is to take a look at OpenMM:
https://simtk.org/home/openmm
It's a Molecular Dynamics API that has many of the basic elements that you need (integrators, thermostats, barostats, etc) and supports running on the CPU via OpenCL and GPU via CUDA and OpenCL. It has a python wrapper that I've used before and basically mimics the underlying c-api calls. It's been incorporated into Gromacs, and MDLab, so you have some examples of how to integrate it if you're really dead set on building something from (semi) scratch
However as others have said, I highly recommend taking a look at NAMD, Gromacs, HOOMD, LAMMPS, DL_POLY, etc to see if it fits your needs before you embark on re-inventing the wheel.
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I see what seems like a majority of Python developers on StackOverflow endorsing the use of concise functional tools like lambdas, maps, filters, etc., while others say their code is clearer and more maintainable by not using them. What is your preference?
Also, if you are a die-hard functional programmer or hardcore into OO, what other specific programming practices do you use that you think are best for your style?
Thanks in advance for your opinions!
I mostly use Python using object-oriented and procedural styles. Python is actually not particularly well-suited to functional programming.
A lot of people think they are writing functional Python code by using lots of lambda, map, filter, and reduce, but this is a bit over-simplified. The hallmark feature of functional programming is a lack of state or side effects. Important elements of a functional style are pure functions, recursive algorithms, and first class functions.
Here are my thoughts on functional programming and Python:
Pure functions are great. I do my best to make my module-level functions pure.
Pure functions can be tested. Since they do not depend on outside state, they are much easier to test.
Pure functions are able to support other optimizations, such as memoization and trivial parallelization.
Class-based programming can be pure. If you want an equivalent to pure functions using Python classes (which is sometimes but not always what you want),
Make your instances immutable. In particular, this mainly means to make your methods always return new instances of your class rather than changing the current one.
Use dependency injection rather than getting stuff (like imported module) from global scope.
This might not always be exactly what you want.
Don't try to avoid state all together. This isn't a reasonable strategy in Python. For example, use some_list.append(foo) rather than new_list = some_list + [foo], the former of which is more idiomatic and efficient. (Indeed, a ton of the "functional" solutions I see people use in Python are algorithmically suboptimal compared to just-as-simple or simpler solutions that are not functional or are just as functional but don't use the functional-looking tools.)
Learn the best lessons from functional programming, for example mutable state is dangerous. Ask yourself, Do I really want to change this X or do I want a new X?
One really common place this comes up is when processing a list. I would use
foo = [bar(item.baz()) for item in foo]
rather than
for index, _ in enumerate(foo):
foo[index] = bar(foo[index].baz())
and stuff like it. This avoids confusing bugs where the same list object is stored elsewhere and shouldn't be changed. (If it should be changed, then there is a decent chance you have a design error. Mutating some list you have referenced multiple places isn't a great way to share state.)
Don't use map and friends gratuitously. There is nothing more functional about doing this.
map/filter are not more functional than list comprehensions. List comprehensions were borrowed from Haskell, a pure functional language. map and especially filter can be harder to understand than a list comprehension. I would never use map or filter with a lambda but might if I had a function that already existed; I use map a decent bit.
The same goes for itertools.imap/ifilter compared to generator expressions. (These things are somewhat lazy, which is something great we can borrow from the functional world.)
Don't use map and filter for side effects. I see this with map a lot, which both makes hard-to-understand code, unneeded lists, and is decidedly not functional (despite people thinking it must be because of map.) Just use a for loop.
reduce is confusing except for very simple cases. Python has for loops and there is no hurt in using them.
Don't use recursive algorithms. This is one part of functional programming Python just does not support well. CPython (and I think all other Pythons) do not support tail call optimization. Use iteration instead.
Only use lambda when you are defining functions on the fly. Anonymous functions aren't better than named functions, the latter of which are often more robust, maintainable, and documented.
I use the features of the language that get the job done with the shortest, cleanest code possible. If that means that I have to mix the two, which I do quite often, then that's what gets done.
I am both a die-hard OOP and functional programmer and these styles work very well together, mostly because they are completely orthogonal. There are plenty of object-oriented, functional languages and Python is one of them.
So basically, decomposing a application into classes is very helpful when designing a system. When you're doing the actual implementation, FP helps to write correct code.
Also I find it very offensive that you imply that functional programming just means "use folds everywhere". That is probably the biggest and worst misconception about FP. Much has been written of that topic, so I'll just say that the great thing about FP is the idea to combine simple (,correct and reusable) functions into new, more and more complex function. That way it's pretty hard to write "almost correct" code - either the whole thing does exactly what you want, or it breaks completely.
FP in Python mostly revolves around writing generators and their relatives (list comprehensions) and the things in the itertools module. Explicit map/filter/reduce calls are just unneeded.
Python has only marginal functional programming features so I would be surprised if many people would use it especially for that. For example there is no standard way to do function composition and the standard library's reduce() has been deprecated in favor of explicit loops.
Also, I don't think that map() or filter() are generally endorsed. In opposite, usually list comprehensions seem to be preferred.
Most answers on StackOverflow are short, concise answers, and the functional aspects of python make writing that kind of answers easy.
Python's OO-features simply aren't needed in 10-20 line answers, so you don't see them around here as much.
I select Python when I'm taking on a problem that maps well to an OO solution. Python only provides a limited ability to program in a functional manner compared to full blown functional languages.
If I really want functional programming, I use Lisp.
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I've been recently asked to learn some MATLAB basics for a class.
What does make it so cool for researchers and people that works in university?
I saw it's cool to work with matrices and plotting things... (things that can be done easily in Python using some libraries).
Writing a function or parsing a file is just painful. I'm still at the start, what am I missing?
In the "real" world, what should I think to use it for? When should it can do better than Python? For better I mean: easy way to write something performing.
UPDATE 1: One of the things I'd like to know the most is "Am I missing something?" :D
UPDATE 2: Thank you for your answers. My question is not about buy or not to buy MATLAB. The university has the possibility to give me a copy of an old version of MATLAB (MATLAB 5 I guess) for free, without breaking the license. I'm interested in its capabilities and if it deserves a deeper study (I won't need anything more than basic MATLAB in oder to pass the exam :P ) it will really be better than Python for a specific kind of task in the real world.
Adam is only partially right. Many, if not most, mathematicians will never touch it. If there is a computer tool used at all, it's going to be something like Mathematica or Maple. Engineering departments, on the other hand, often rely on it and there are definitely useful things for some applied mathematicians. It's also used heavily in industry in some areas.
Something you have to realize about MATLAB is that it started off as a wrapper on Fortran libraries for linear algebra. For a long time, it had an attitude that "all the world is an array of doubles (floats)". As a language, it has grown very organically, and there are some flaws that are very much baked in, if you look at it just as a programming language.
However, if you look at it as an environment for doing certain types of research in, it has some real strengths. It's about as good as it gets for doing floating point linear algebra. The notation is simple and powerful, the implementation fast and trusted. It is very good at generating plots and other interactive tasks. There are a large number of `toolboxes' with good code for particular tasks, that are affordable. There is a large community of users that share numerical codes (Python + NumPy has nothing in the same league, at least yet)
Python, warts and all, is a much better programming language (as are many others). However, it's a decade or so behind in terms of the tools.
The key point is that the majority of people who use MATLAB are not programmers really, and don't want to be.
It's a lousy choice for a general programming language; it's quirky, slow for many tasks (you need to vectorize things to get efficient codes), and not easy to integrate with the outside world. On the other hand, for the things it is good at, it is very very good. Very few things compare. There's a company with reasonable support and who knows how many man-years put into it. This can matter in industry.
Strictly looking at your Python vs. MATLAB comparison, they are mostly different tools for different jobs. In the areas where they do overlap a bit, it's hard to say what the better route to go is (depends a lot on what you're trying to do). But mostly Python isn't all that good at MATLAB's core strengths, and vice versa.
Most of answers do not get the point.
There is ONE reason matlab is so good and so widely used:
EXTREMELY FAST CODING
I am a computer vision phD student and have been using matlab for 4 years, before my phD I was using different languages including C++, java, php, python... Most of the computer vision researchers are using exclusively matlab.
1) Researchers need fast prototyping
In research environment, we have (hopefully) often new ideas, and we want to test them really quick to see if it's worth keeping on in that direction. And most often only a tiny sub-part of what we code will be useful.
Matlab is often slower at execution time, but we don't care much. Because we don't know in advance what method is going to be successful, we have to try many things, so our bottle neck is programming time, because our code will most often run a few times to get the results to publish, and that's all.
So let's see how matlab can help.
2) Everything I need is already there
Matlab has really a lot of functions that I need, so that I don't have to reinvent them all the time:
change the index of a matrix to 2d coordinate: ind2sub extract all patches of an image: im2col; compute a histogram of an image: hist(Im(:)); find the unique elements in a list unique(list); add a vector to all vectors of a matrix bsxfun(#plus,M,V); convolution on n-dimensional arrays convn(A); calculate the computation time of a sub part of the code: tic; %%code; toc; graphical interface to crop an image: imcrop(im);
The list could be very long...
And they are very easy to find by using the help.
The closest to that is python...But It's just a pain in python, I have to go to google each time to look for the name of the function I need, and then I need to add packages, and the packages are not compatible one with another, the format of the matrix change, the convolution function only handle doubles but does not make an error when I give it char, just give a wrong output... no
3) IDE
An example: I launch a script. It produces an error because of a matrix. I can still execute code with the command line. I visualize it doing: imagesc(matrix). I see that the last line of the matrix is weird. I fix the bug. All variables are still set. I select the remaining of the code, press F9 to execute the selection, and everything goes on. Debuging becomes fast, thanks to that.
Matlab underlines some of my errors before execution. So I can quickly see the problems. It proposes some way to make my code faster.
There is an awesome profiler included in the IDE. KCahcegrind is such a pain to use compared to that.
python's IDEs are awefull. python without ipython is not usable. I never manage to debug, using ipython.
+autocompletion, help for function arguments,...
4) Concise code
To normalize all the columns of a matrix ( which I need all the time), I do:
bsxfun(#times,A,1./sqrt(sum(A.^2)))
To remove from a matrix all colums with small sum:
A(:,sum(A)<e)=[]
To do the computation on the GPU:
gpuX = gpuarray(X);
%%% code normally and everything is done on GPU
To paralize my code:
parfor n=1:100
%%% code normally and everything is multi-threaded
What language can beat that?
And of course, I rarely need to make loops, everything is included in functions, which make the code way easier to read, and no headache with indices. So I can focus, on what I want to program, not how to program it.
5) Plotting tools
Matlab is famous for its plotting tools. They are very helpful.
Python's plotting tools have much less features. But there is one thing super annoying. You can plot figures only once per script??? if I have along script I cannot display stuffs at each step ---> useless.
6) Documentation
Everything is very quick to access, everything is crystal clear, function names are well chosen.
With python, I always need to google stuff, look in forums or stackoverflow.... complete time hog.
PS: Finally, what I hate with matlab: its price
I've been using matlab for many years in my research. It's great for linear algebra and has a large set of well-written toolboxes. The most recent versions are starting to push it into being closer to a general-purpose language (better optimizers, a much better object model, richer scoping rules, etc.).
This past summer, I had a job where I used Python + numpy instead of Matlab. I enjoyed the change of pace. It's a "real" language (and all that entails), and it has some great numeric features like broadcasting arrays. I also really like the ipython environment.
Here are some things that I prefer about Matlab:
consistency: MathWorks has spent a lot of effort making the toolboxes look and work like each other. They haven't done a perfect job, but it's one of the best I've seen for a codebase that's decades old.
documentation: I find it very frustrating to figure out some things in numpy and/or python because the documentation quality is spotty: some things are documented very well, some not at all. It's often most frustrating when I see things that appear to mimic Matlab, but don't quite work the same. Being able to grab the source is invaluable (to be fair, most of the Matlab toolboxes ship with source too)
compactness: for what I do, Matlab's syntax is often more compact (but not always)
momentum: I have too much Matlab code to change now
If I didn't have such a large existing codebase, I'd seriously consider switching to Python + numpy.
Hold everything. When's the last time you programed your calculator to play tetris? Did you actually think you could write anything you want in those 128k of RAM? Likely not. MATLAB is not for programming unless you're dealing with huge matrices. It's the graphing calculator you whip out when you've got Megabytes to Gigabytes of data to crunch and/or plot. Learn just basic stuff, but also don't kill yourself trying to make Python be a graphing calculator.
You'll quickly get a feel for when you want to crunch, plot or explore in MATLAB and when you want to have all that Python offers. Lots of engineers turn to pre and post processing in Python or Perl. Occasionally even just calling out to MATLAB for the hard bits.
They are such completely different tools that you should learn their basic strengths first without trying to replace one with the other. Granted for saving money I'd either use Octave or skimp on ease and learn to work with sparse matrices in Perl or Python.
MATLAB is great for doing array manipulation, doing specialized math functions, and for creating nice plots quick.
I'd probably only use it for large programs if I could use a lot of array/matrix manipulation.
You don't have to worry about the IDE as much as in more formal packages, so it's easier for students without a lot of programming experience to pick up.
MATLAB is a popular and widely adapted piece of a
sophisticated software package. It'd be a mistake to think
it's merely a math software since it has a wide range of
"toolboxes". I recently used Matplotlib to plot some data
from a database and it did the job without needing all the
bells and whistles of MATLAB. However, it may not be proper
to compare Python and MATLAB in every situation. As with
everything else the decision depends on what you need to do.
I used MATLAB in undergrad for control systems design and
simulation and also for image processing in grad school. For
these fields MATLAB makes the most sense because of the
powerful control and image processing toolboxes. As everyone
mentioned, array operations, which are used in every MATLAB
script you'd need to write, are very easy with MATLAB.
Another nice thing about MATLAB is that it's very easy and
fast to do prototyping and trying out ideas using the built
in toolbox functions. For instance, it takes no effort to
import an image and compute it's histogram or do some simple
processing on it. One disadvantage of MATLAB could be it's
speed because of its interpreted nature. However, if one
really needs speed than he can choose to implement the
tested logic in C/C++, etc.
For further comparison with Python, I can say that MATLAB
provides a full package for you to do your work without the
need of looking around for external libraries and
implementing extra functions.
One last point about MATLAB which I see is not mentioned in
the answers here is that it has a very powerful visual
modeling/simulation environment called Simulink. It's
easier to design and simulate larger systems with Simulink.
Finally, again, it all depends on the problem you need to
solve. If your problem domain can make use of one of
MATLAB's toolboxes and you have access to MATLAB then you
can be sure that you'll have the right tool to solve it.
MATLAB, as mentioned by others, is great at matrix manipulation, and was originally built as an extension of the well-known BLAS and LAPACK libraries used for linear algebra. It interfaces well with other languages like Java, and is well favored by engineering and scientific companies for its well developed and documented libraries. From what I know of Python and NumPy, while they share many of the fundamental capabilities of MATLAB, they don't have the full breadth and depth of capabilities with their libraries.
Personally, I use MATLAB because that's what I learned in my internship, that's what I used in grad school, and that's what I used in my first job. I don't have anything against Python (or any other language). It's just what I'm used too.
Also, there is another free version in addition to scilab mentioned by #Jim C from gnu called Octave.
Personally, I tend to think of Matlab as an interactive matrix calculator and plotting tool with a few scripting capabilities, rather than as a full-fledged programming language like Python or C. The reason for its success is that matrix stuff and plotting work out of the box, and you can do a few very specific things in it with virtually no actual programming knowledge. The language is, as you point out, extremely frustrating to use for more general-purpose tasks, such as even the simplest string processing. Its syntax is quirky, and it wasn't created with the abstractions necessary for projects of more than 100 lines or so in mind.
I think the reason why people try to use Matlab as a serious programming language is that most engineers (there are exceptions; my degree is in biomedical engineering and I like programming) are horrible programmers and hate to program. They're taught Matlab in college mostly for the matrix math, and they learn some rudimentary programming as part of learning Matlab, and just assume that Matlab is good enough. I can't think of anyone I know who knows any language besides Matlab, but still uses Matlab for anything other than a few pure number crunching applications.
The most likely reason that it's used so much in universities is that the mathematics faculty are used to it, understand it, and know how to incorporate it into their curriculum.
Between matplotlib+pylab and NumPy I don't think there's much actual difference between Matlab and python other than cultural inertia as suggested by #Adam Bellaire.
I believe you have a very good point and it's one that has been raised in the company where I work. The company is limited in it's ability to apply matlab because of the licensing costs involved. One developer proved that Python was a very suitable replacement but it fell on ignorant ears because to the owners of those ears...
No-one in the company knew Python although many of us wanted to use it.
MatLab has a name, a company, and task force behind it to solve any problems.
There were some (but not a lot) of legacy MatLab projects that would need to be re-written.
If it's worth £10,000 (??) it's gotta be worth it!!
I'm with you here. Python is a very good replacement for MatLab.
I should point out that I've been told the company uses maybe 5% to 10% of MatLabs capabilities and that is the basis for my agreement with the original poster
MATLAB is a fantastic tool for
prototyping
engineering simulation and
fast visualization of data
You can really play with, visualize and test your ideas on a data set very effectively. It should not be regarded as an alternative to other software languages used for product development. I highly recommend it for the above tasks, though it is expensive - free alternatives like Octave and Python are catching up.
Seems to be pure inertia. Where it is in use, everyone is too busy to learn IDL or numpy in sufficient detail to switch, and don't want to rewrite good working programs. Luckily that's not strictly true, but true enough in enough places that Matlab will be around a long time. Like Fortran (in active use where i work!)
The main reason it is useful in industry is the plug-ins built on top of the core functionality. Almost all active Matlab development for the last few years has focused on these.
Unfortunately, you won't have much opportunity to use these in an academic environment.
I know this question is old, and therefore may no longer be
watched, but I felt it was necessary to comment. As an
aerospace engineer at Georgia Tech, I can say, with no
qualms, that MATLAB is awesome. You can have it quickly
interface with your Excel spreadsheets to pull in data about
how high and fast rockets are flying, how the wind affects
those same rockets, and how different engines matter. Beyond
rocketry, similar concepts come into play for cars, trucks,
aircraft, spacecraft, and even athletics. You can pull in
large amounts of data, manipulate all of it, and make sure
your results are as they should be. In the event something is
off, you can add a line break where an error occurs to debug
your program without having to recompile every time you want
to run your program. Is it slower than some other programs?
Well, technically. I'm sure if you want to do the number
crunching it's great for on an NVIDIA graphics processor, it
would probably be faster, but it requires a lot more effort
with harder debugging.
As a general programming language, MATLAB is weak. It's not
meant to work against Python, Java, ActionScript, C/C++ or
any other general purpose language. It's meant for the
engineering and mathematics niche the name implies, and it
does so fantastically.
MATLAB WAS a wrapper around commonly available libraries.
And in many cases it still is. When you get to larger
datasets, it has many additional optimizations, including
examining and special casing common problems (reducing to
sparse matrices where useful, for example), and handling
edge cases. Often, you can submit a problem in a standard
form to a general function, and it will determine the best
underlying algorithm to use based on your data. For small
N, all algorithms are fast, but MATLAB makes determining the
optimal algorithm a non-issue.
This is written by someone who hates MATLAB, and has tried
to replace it due to integration issues. From your
question, you mention getting MATLAB 5 and using it for a
course. At that level, you might want to look at
Octave, an open source implementation with the same
syntax. I'm guessing it is up to MATLAB 5 levels by now (I
only play around with it). That should allow you to "pass
your exam". For bare MATLAB functionality it seems to be
close. It is lacking in the toolbox support (which, again,
mostly serves to reformulate the function calls to forms
familiar to engineers in the field and selects the right
underlying algorithm to use).
One reason MATLAB is popular with universities is the same reason a lot of things are popular with universities: there's a lot of professors familiar with it, and it's fairly robust.
I've spoken to a lot of folks who are especially interested in MATLAB's nascent ability to tap into the GPU instead of working serially. Having used Python in grad school, I kind of wish I had the licks to work with MATLAB in that case. It sure would make vector space calculations a breeze.
It's been some time since I've used Matlab, but from memory it does provide (albeit with extra plugins) the ability to generate source to allow you to realise your algorithm on a DSP.
Since python is a general purpose programming language there is no reason why you couldn't do everything in python that you can do in matlab. However, matlab does provide a number of other tools - eg. a very broad array of dsp features, a broad array of S and Z domain features.
All of these could be hand coded in python (since it's a general purpose language), but if all you're after is the results perhaps spending the money on Matlab is the cheaper option?
These features have also been tuned for performance. eg. The documentation for Numpy specifies that their Fourier transform is optimised for power of 2 point data sets. As I understand Matlab has been written to use the most efficient Fourier transform to suit the size of the data set, not just power of 2.
edit: Oh, and in Matlab you can produce some sensational looking plots very easily, which is important when you're presenting your data. Again, certainly not impossible using other tools.
I think you answered your own question when you noted that Matlab is "cool to work with matrixes and plotting things". Any application that requires a lot of matrix maths and visualisation will probably be easiest to do in Matlab.
That said, Matlab's syntax feels awkward and shows the language's age. In contrast, Python is a much nicer general purpose programming language and, with the right libraries can do much of what Matlab does. However, Matlab is always going to have a more concise syntax than Python for vector and matrix manipulation.
If much of your programming involves these sorts of manipulations, such as in signal processing and some statistical techniques, then Matlab will be a better choice.
First Mover Advantage. Matlab has been around since the late 1970s. Python came along more recently, and the libraries that make it suitable for Matlab type tasks came along even more recently. People are used to Matlab, so they use it.
Matlab is good at doing number crunching. Also Matrix and matrix manipulation. It has many helpful built in libraries(depends on the what version) I think it is easier to use than python if you are going to be calculating equations.