Subprocess file output needs to close before reading - python

I'm trying to use a subprocess to write the output to a data file, and then parse through it in order to check for some data in it. However, when I need to do the reading through the file's lines, I always get a blank file unless I close the file and then reopen it. While it works, I just don't like having to do this and I want to know why it happens. Is it an issue with subprocess, or another intricacy of the file mode?
dumpFile=open(filename,"w+")
dump = subprocess.Popen(dumpPars,stdout=dumpFile)
dump.wait()
At this point, if I try to read the file, I get nothing. However, it works fine by doing these commands after:
dumpFile.close()
dumpFile=open(filename,"r")

The with statement automatically closes the file after the block ends:
with open(filename, "w+") as dumpFile:
dump = subprocess.Popen(dumpPars, stdout=dumpFile)
dump.wait()
with open(filename, "r") as dumpFile:
# dumpFile reading code goes here

You probably need to seek back to the beginning of the file, otherwise the file pointer will be at the end of the file when you try to read it:
dumpFile.seek(0)
However, if you don't need to actually store dumpFile, it's probably better to do something like:
dump = = subprocess.Popen(dumpPars,stdout=subprocess.PIPE)
stdoutdata,_ = dump.communicate() #now parse stdoutdata
unless your command produces large volumes of data.

If you want to read what you've already written, either close and reopen the file, or "rewind" it - seek to offset 0.
If you want to read the file while it is being written, you can do so (don't even need to write it to disk), see this other question Capture output from a program

Related

Nesting 'r' after opening a file in write mode

so I had an exercise asking to write to a file (using newlines) and then open it in reading mode. I did exactly that and the console outputs the right result. What happened was that I tried to do it within the 'w' mode code block and the console outputs nothing.
For example:
with open('test.txt', 'w') as wf:
nicknames = ["Big Tuna", "Prison Mike", "Booster Seat"]
wf.write('\n'.join(nicknames))
with open('test.txt', 'r') as rf:
print(rf.read())
I understand that the program only closes the file after the with statement, but I need clarification on my understanding of what's happening here.
So, what I understood so far is that the program first creates the test.txt file (test.txt did not exist in my file path) and then proceeds to convert and write the given contents into the test.txt file. After that, the nested with tries to open a file named test.txt in reading mode, but the console will not output anything because the program is trying to open a file that is already opened, that's why it cannot read into an already opened file.
Please correct me if I'm misunderstood the above because I am unsure whether or not I've understood it correctly, thank you.
That’s not what’s happening. Unix systems, at least, will happily let you open a file multiple times.
However, Python’s IO is buffered by default. You need to flush the data you’ve written out to the file before you can read the data from it. See https://docs.python.org/3/library/io.html#io.IOBase.flush for more information about this. (Summary: put wf.flush() after the wf.write(…) call and before attempting to read from it.

writing output for python not functioning

I am attempting to output a new txt file but it come up blank. I am doing this
my_file = open("something.txt","w")
#and then
my_file.write("hello")
Right after this line it just says 5 and then no text comes up in the file
What am I doing wrong?
You must close the file before the write is flushed. If I open an interpreter and then enter:
my_file = open('something.txt', 'w')
my_file.write('hello')
and then open the file in a text program, there is no text.
If I then issue:
my_file.close()
Voila! Text!
If you just want to flush once and keep writing, you can do that too:
my_file.flush()
my_file.write('\nhello again') # file still says 'hello'
my_file.flush() # now it says 'hello again' on the next line
By the way, if you happen to read the beautiful, wonderful documentation for file.write, which is only 2 lines long, you would have your answer (emphasis mine):
Write a string to the file. There is no return value. Due to buffering, the string may not actually show up in the file until the flush() or close() method is called.
If you don't want to care about closing file, use with:
with open("something.txt","w") as f:
f.write('hello')
Then python will take care of closing the file for you automatically.
As Two-Bit Alchemist pointed out, the file has to be closed. The python file writer uses a buffer (BufferedIOBase I think), meaning it collects a certain number of bytes before writing them to disk in bulk. This is done to save overhead when a lot of write operations are performed on a single file.
Also: When working with files, try using a with-environment to make sure your file is closed after you are done writing/reading:
with open("somefile.txt", "w") as myfile:
myfile.write("42")
# when you reach this point, i.e. leave the with-environment,
# the file is closed automatically.
The python file writer uses a buffer (BufferedIOBase I think), meaning
it collects a certain number of bytes before writing them to disk in
bulk. This is done to save overhead when a lot of write operations are
performed on a single file. Ref #m00am
Your code is also okk. Just add a statement for close file, then work correctly.
my_file = open("fin.txt","w")
#and then
my_file.write("hello")
my_file.close()

Prints on stdout but unable to write to file in Python

I'm really frustrated with this strange behaviour of Python all of a sudden. I've been writing to files all sorts of data but since today morning it just doesn't seem to work. I've referred to all these before posting:
How to redirect 'print' output to a file using python?
Failed to write to file but generates no Error
Unable to write data into a file using python
Unable to write list of elements to a file using python
Have tried all following commands but it just doesn't write anything to the delete.txt file. What's happening?
fl=open('delete.txt','w')
fl.write(msg) <--Doesnt work,tried this also
fl.write('%s' %msg) <--Doesnt work,tried this also
fl.write("at least write this") <-- Doesnt work,tried this also
print (msg) <- WORKS
Code:
for i in hd_com.comment_message[1:500]:
fl=open('delete.txt','wb')
try:
if len(i)>40:
mes=processComUni(i)
proc=nltk.tokenize.word_tokenize(mes)
#print proc
pos=nltk.pos_tag(proc)
for i in pos:
if ((i[1]=="NN") or (i[1]=="NNP") or (i[1]=="NNS")) and len(i[0])>2:
#print i[0],i[1]
for j in home_depo_inv:
if i[0] in j.split() and (i[0]!='depot' and i[0]!='home' and i[0]!='store' and i[0]!='por' and i[0]!='get' and i[0]!='house' and i[0]!='find' and i[0]!='part' and i[0]!='son' and i[0]!='put' and i[0]!='lot' and i[0]!='christmas' and i[0]!='post'):
a=re.findall(i[0],j)
fl.write(str(i))<--Doesnt work,tried this also
fl.write(str(mes))<--Doesnt work,tried this also
fl.write("\n")<--Doesnt work,tried this also
fl.write("hello")<--Doesnt work,tried this also
fl.flush()
break
except:
continue
fl.close()
More code:
type(mes) = str
mes="omg would love front yard"
Your snippet's indentation is totally messed up, but anyway: your code starts with:
for i in hd_com.comment_message[1:500]:
fl=open('delete.txt','wb')
which means you reopen the file for writing on each iteration, erasing whatever might have been written by the previous iteration.
You need to flush the output stream explicitly when writing to a file handle like that.
f = open("test.txt", "w")
f.write("this is a test\n")
# no text in the output file at this point
f.flush()
# buffers are flushed to the file
f.write("this, too, is a test\n")
# again, line doesn't show in the file
f.close()
# closing the file flushes the buffers, text appears in file
From the documentation of file.write:
Note that due to buffering, flush() or close() may be needed before the file on disk reflects the data written.

How to confirm that a file object is empty? [Python]

in a py module, I write:
outFile = open(fileName, mode='w')
if A:
outFile.write(...)
if B:
outFile.write(...)
and in these lines, I didn't use flush or close method.
Then after these lines, I want to check whether this "outFile" object is empty or not. How can I do with it?
There are a few problems with your code.
You can't .write to a file that you opened with 'r'. You need to open(fileName, 'w').
If A or B then you've certainly written to the file, so it's not empty!
Barring those. you can get the length of a file with
os.stat(outFile.fileno())
EDIT: I'll explain what flush does. Python is often used to do quite large amounts of file reads and writes, which can be slow. It is thus tweaked to make them as fast as possible. One way that is does so is to "buffer" such writes and then do them all in one big block: when you write a small string, Python will remember it but won't actually write it to the file until it thinks it should.
This means that if you want to tell whether you have written data to the file by inspecting the file, you have to tell Python to write all the data it's remembering first, or else you might not see it. flush is the command to write all the buffered data.
Of course, if you ask Python whether it's written anything to the file, say by inspecting the position in the file (.tell()), then it will know about the buffering.
If you've already written to the file, you can use .tell() to check if the current file position is nonzero:
>>> handle = open('/tmp/file.txt', 'w')
>>> handle.write('foo')
>>> handle.tell()
3
This won't work if you .seek() back to the beginning of the file.
You can use os.stat to get file info:
import os
fileSize = os.stat(fileName).st_size
with open("filename.txt", "r+") as f:
if f.read():
# file isn't empty
f.write("something")
# uncomment this line if you want to delete everything else in the file
# f.truncate()
else:
# file is empty
f.write("somethingelse")
"r+" mode always you to read & write.
"with" will automatically close file

Python: write to file multiple times without open/close for each write

How can i open file in python and write to it multiple times?
I am using speech recognition, and i want one file to change its contents based on what i say.
Other application needs to be able to read this file.
Is there way to do this, or i need to open/close for each write?
You can just keep the file object around and write to it whenever you want. You might need to flush it after each write to make things visible to the outside world.
If you do the writes from a different process, just open the file in append mode ("a").
f = open('myfile.txt','w')
f.write('Hi')
f.write('Hi again!')
f.write('Is this thing on?')
# do this as long as you need to
f.seek(0,0) # return to the beginning of the file if you need to
f.close() # close the file handle

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