Python running bash script and generate OSError - python

I have a bash script which helps establish a local SimpleHTTPServer.
python -m SimpleHTTPServer 8080
I have put this inside my project folder. While I am running the program by using:
subprocess.call('./setup.sh')
an error message comes out:
Traceback (most recent call last):
File "test.py", line 2, in <module>
subprocess.call('./setup.sh')
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 522, in call
return Popen(*popenargs, **kwargs).wait()
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 709, in __init__
errread, errwrite)
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 1326, in _execute_child
raise child_exception
OSError: [Errno 13] Permission denied
I retried this in terminal
localhost:Desktop XXXX$ sh setup.sh
Serving HTTP on 0.0.0.0 port 8080 ...
It is working fine.
I remember there are a few times where the terminal has popped up a window ask me about the permission for python about something related to firewall and I allowed it. Can you help me?

Run it exactly as you would on the shell, i.e., as sh ./setup.sh:
subprocess.call('sh ./setup.sh', shell=True)
That should do the trick. Most likely, your setup.sh is not set to executable or is missing the first #! line that marks its interpreter.
EDIT:
Make sure to set shell=True to execute it via the shell, if you pass it as a single string, or separate the parameters into a list, as you might with execve:
subprocess.call(['sh', './setup.sh'])

Give subprocess.Popen() a try, with cwd param:
subprocess.Popen(['sh', './setup.sh'], cwd='/dir/contains/setup.sh/')

Related

Errno 13: Passing Python variables to bash script [duplicate]

This question already has answers here:
Can't execute shell script from python subprocess: permission denied
(2 answers)
Closed 6 years ago.
Currently I am testing a very simple piece of code. I simply want to write a python script that sets a variable and then pass that variable into a bash script for use.
Python Script:
from subprocess import check_call
a = str(3)
check_call(["/home/desktop/bash2pyTest/test.sh", a], shell=False)
Bash Script:
#!/bin/bash
echo "This number was sent from the py script: " $1
I have read other Q&As that are related to this topic; however, I am not finding a solution that I am conceptually understand; thus, the syntax above might be incorrect. I have tried a few other methods as well; however, I keep receiving the following error:
Traceback (most recent call last):
File "/home/cassandra/desktop/bash2pyTest/callVar.py", line 3, in <module>
check_call(["/home/cassandra/desktop/bash2pyTest/test.sh", a], shell=False)
File "/usr/lib64/python2.7/subprocess.py", line 537, in check_call
retcode = call(*popenargs, **kwargs)
File "/usr/lib64/python2.7/subprocess.py", line 524, in call
return Popen(*popenargs, **kwargs).wait()
File "/usr/lib64/python2.7/subprocess.py", line 711, in __init__
errread, errwrite)
File "/usr/lib64/python2.7/subprocess.py", line 1327, in _execute_child
raise child_exception
OSError: [Errno 13] Permission denied
Process finished with exit code 1
Any help would be greatly appreciated. I'm stumped.
Try
chmod +x /home/desktop/bash2pyTest/test.sh
in shell. The file you are trying to execute is not executable.
Or another option in python script:
check_call(["sh","/home/desktop/bash2pyTest/test.sh", a], shell=False)
The error says that permission is denied. I tested your code, and it works fine on my machine. However, you will need to be sure that the user running the command has sufficient privileges for the test.sh script. Most importantly, be sure that test.sh has execute permissions set. That's often the most easily missed permission.

subprocess error in python

I am trying to run a praat file from python itself with subprocess but python(subprocess) can't seem to find the directory. I don't understand why since when I run the command in terminal, it works perfectly fine. Cant anyone guide me to where I am going wrong?
This is the subprocess code
import silex
import subprocess as sb
cmd_line = raw_input()
args = shlex.split(cmd_line)
p = sb.Popen(args)
When I run it with the input
Praat /Users/admirmonteiro/tmp/tmp.praat
this is the error that I get :
Traceback (most recent call last):
File "<input>", line 1, in <module>
File "/Users/admirmonteiro/anaconda/lib/python2.7/subprocess.py", line 710, in __init__
errread, errwrite)
File "/Users/admirmonteiro/anaconda/lib/python2.7/subprocess.py", line 1335, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
As mentioned, I run the commands and they run fine in the terminal.
I have also tried to run subprocess.call but the same error occurs. I have also tried with with shell=True as an argument but that also outputs the same error.
Please Help !
Type the following in the shell to get the full path of the Praatapplication.
whereis Praat
Then use the full path in you python program.

Unable to run shell script from the Pydev environment in Eclipse

I am using Centos 7.0 and have installed Eclipse Kepler in the Pydev environment. I want to run a simple c shell script through Python using subprocess as follows:
import subprocess
subprocess.call(["./test1.csh"])
This c shell script executes in the terminal and also if I run command like "ls" or ""pwd then I get the correct output e.g.
subprocess.call(["ls"]) # give me the list of all files
subprocess.call(["pwd"]) # gives me the location of current directory.
But when I run subprocess.call(["./test1.csh"]), I get the following error:
Traceback (most recent call last):
File "/home/nishant/workspace/codec_implement/src/NTTool/raw2waveconvert.py", line 8, in <module>
subprocess.call(["./test1.csh"])
File "/usr/lib64/python2.7/subprocess.py", line 524, in call
return Popen(*popenargs, **kwargs).wait()
File "/usr/lib64/python2.7/subprocess.py", line 711, in __init__
errread, errwrite)
File "/usr/lib64/python2.7/subprocess.py", line 1308, in _execute_child
raise child_exception
OSError: [Errno 13] Permission denied
Where am I going wrong? Please suggest
Make sure that the file test1.csh is executable. As Lukas Graf commented, also check the shebang (#!...) in the first line.
To confirm that, before run it through Python, run it in the shell.
$ ls -l test1.csh
...
$ ./test1.csh
The current working directory will be different from when you run it in the terminal. Specify the full path of the shell script. Or change the working directory configuration in the PyDev.
UPDATE
Prepend the shell executable:
import subprocess
subprocess.call(["csh", "./test1.csh"])

Python process.call() error

I have OSX and am running the python script out of the Unix shell
I'm running a python code that should open an application. I've been testing with Firefox.app and have been getting
Traceback (most recent call last):
File "/Users/brennan/Desktop/Coding/Wilix/wilix.py", line 453, in <module>
subprocess.call(["open -a "+cp2])
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 493, in call
return Popen(*popenargs, **kwargs).wait()
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 679, in __init__
errread, errwrite)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 1228, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
My code is:
subprocess.call(["open -a "+cp2])
where cp2 is user input. (Firefox in this case)
if I cd into the programs directory and then do
open -a Firefox
firefox opens fine.
if I change my code to
subprocess.call(["open -a Firefox"])
I still get the error message.
You're passing open -a Firefox as one argument, as if you ran this in the shell:
$ "open -a Firefox"
You need to split up the items:
subprocess.call(['open', '-a', 'Firefox'])
Try giving the full path of firefox app.
It's wrong to use subprocess.call without shell=True or providing command as a list. Please, take a look at first examples in the docs:
http://docs.python.org/2/library/subprocess.html
Full path to Firefox may be needed or may be not needed.

Python script works fine on Linux, on Windows, causes WindowsError: [Error 5] Access is denied

I have a simple python script that works fine on Linux, I moved it to a Windows machine and when I attempt to run it, I get the following exception message:
Traceback (most recent call last):
File "C:\path\to\my\script.py", line 57, in <module>
retcode = subprocess.call(command)
File "C:\Python27\lib\subprocess.py", line 493, in call
return Popen(*popenargs, **kwargs).wait()
File "C:\Python27\lib\subprocess.py", line 679, in __init__
errread, errwrite)
File "C:\Python27\lib\subprocess.py", line 893, in _execute_child
startupinfo)
WindowsError: [Error 5] Access is denied
Here is the snippet of code that throws the exception:
print 'command is:',command
retcode = subprocess.call(command)
The console out put is as follows:
command is: ['c:\python27', 'C:\path\to\script.py', '--mode=2', '--check-temp=false', '--all-seasons=true', '--added=1', '--max-temp=2000', '--source=2', '--loc=XYZ']
Unhandled exception while debugging...
Anyone knows how to fix this?
I am running python v2.7.3 on Windows XP Professional
According to the documentation, the first item in the argument sequence (in this case, the first element of command) is interpreted as the program to execute.
Looking at the first element of command, it would appear that you're trying to execute a directory. Windows (somewhat non-intuitively) returns an access denied error whenever you try to read from a directory as if it were a file, and the same thing happens if you try to execute one.
Instead of c:\python27 you probably want c:\python27\bin\python.exe or something similar. At any rate, you need to be pointing at the executable, not at the directory. I'm not sure why this works for you on Linux.
Your program doesn't have access to the file... check permissions on the file you're trying to access, then go from there... (ie, either elevate the Python interpreter's permissions, or reduce access required to said resource) - either way - tread carefully.

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