I am reading a xml file and converting to df using xmltodict and pandas.
This is how one of the elements in the file looks like
<net>
<ref>https://whois.arin.net/rest/v1/net/NET-66-125-37-120-1</ref>
<endAddress>66.125.37.127</endAddress>
<handle>NET-66-125-37-120-1</handle>
<name>SBC066125037120020307</name>
<netBlocks>
<netBlock>
<cidrLenth>29</cidrLenth>
<endAddress>066.125.037.127</endAddress>
<type>S</type>
<startAddress>066.125.037.120</startAddress>
</netBlock>
</netBlocks>
<pocLinks/>
<orgHandle>C00285134</orgHandle>
<parentNetHandle>NET-66-120-0-0-1</parentNetHandle>
<registrationDate>2002-03-08T00:00:00-05:00</registrationDate>
<startAddress>66.125.37.120</startAddress>
<updateDate>2002-03-08T07:56:59-05:00</updateDate>
<version>4</version>
</net>
since there are a large number of records like this which is being pulled in by an API, sometimes some <net> objects at the end of the file can be partially downloaded.
ex : one tag not having closing tag.
This is what i wrote to parse the xml
xml_data = open('/Users/dgoswami/Downloads/net.xml', 'r').read() # Read data
xml_data = xmltodict.parse(xml_data,
process_namespaces=True,
namespaces={'http://www.arin.net/bulkwhois/core/v1':None})
when that happens, I get an error like so
no element found: line 30574438, column 37
I want to be able to parse till the last valid <net> element.
How can that be done?
You may need to fix your xml beforehand - xmltodict has no ability to do that for you.
You can leverage lxml as described in Python xml - handle unclosed token to fix your xml:
from lxml import etree
def fixme(x):
p = etree.fromstring(x, parser = etree.XMLParser(recover=True))
return etree.tostring(p).decode("utf8")
fixed = fixme("""<start><net>
<endAddress>66.125.37.127</endAddress>
<handle>NET-66-125-37-120-1</handle>
</net><net>
<endAddress>66.125.37.227</endAddress>
<handle>NET-66-125-37-220-1</handle>
""")
and then use the fixed xml:
import xmltodict
print(xmltodict.parse(fixed))
to get
OrderedDict([('start',
OrderedDict([('net', [
OrderedDict([('endAddress', '66.125.37.127'), ('handle', 'NET-66-125-37-120-1')]),
OrderedDict([('endAddress', '66.125.37.227'), ('handle', 'NET-66-125-37-220-1')])
])
]))
])
I have a XML file downloaded from Wordpress that is structured like this:
<wp:postmeta>
<wp:meta_key><![CDATA[country]]></wp:meta_key>
<wp:meta_value><![CDATA[Germany]]></wp:meta_value>
</wp:postmeta>
my goals is to look through the XML file for all the country keys and print the value. I'm completely new to the XML library so I'm looking where to take it from here.
# load libraries
# importing os to handle directory functions
import os
# import XML handlers
from xml.etree import ElementTree
# importing json to handle structured data saving
import json
# dictonary with namespaces
ns = {'wp:meta_key', 'wp:meta_value'}
tree = ElementTree.parse('/var/www/python/file.xml')
root = tree.getroot()
# item
for item in root.findall('wp:post_meta', ns):
print '- ', item.text
print "Finished running"
this throws me a error about using wp as a namespace but I'm not sure where to go from here the documentation is unclear to me. Any help is appreciated.
Downvoters please let me know how I can improve my question.
I don't know XML, but I can treat it as a string like this.
from simplified_scrapy import SimplifiedDoc, req, utils
xml = '''
<wp:postmeta>
<wp:meta_key><![CDATA[country]]></wp:meta_key>
<wp:meta_value><![CDATA[Germany]]></wp:meta_value>
</wp:postmeta>
'''
doc = SimplifiedDoc(xml)
kvs = doc.select('wp:postmeta').selects('wp:meta_key|wp:meta_value').html
print (kvs)
Result:
['<![CDATA[country]]>', '<![CDATA[Germany]]>']
Having some issues with Minidom for parsing an XML file on a remote server.
This is the code I am trying to parse:
<mod n="1">
<body>
Random Body information will be here
</body>
<b>1997-01-27</b>
<d>1460321480</d>
<l>United Kingdom</l>
<s>M</s>
<t>About Denisstoff</t>
</mod>
I'm trying to return the <d> values with Minidom. This is the code I am trying to use to find the value:
expired = True
f = urlreq.urlopen("http://st.chatango.com/profileimg/"+args[:1]+"/"+args[1:2]+"/"+args+"/mod1.xml")
data = f.read().decode("utf-8")
dom = minidom.parseString(data)
itemlist = dom.getElementsByTagName('d')
print(itemlist)
It returns the value is there, but I followed a way to read the data I found here (Below) and it just crashed my python app. This is the code I tried to fix with:
for s in itemlist:
if s.hasAttribute('d'):
print(s.attributes['d'].value)
This is the crash:
AttributeError: 'NodeList' object has no attribute 'value'
I also tried ElementTree but that didn't return any data at all. I have tested the URL and it's correct for the data I want, but I just can't get it to read the data in the tags. Any and all help is appreciated.
if you want to print values from this xml you should use this:
for s in itemlist:
if hasattr(s.childNodes[0], "data"):
print(s.childNodes[0].data)
I hope it help :D
I am using python to display information from a XML file hosted on a website. The code I am using is bellow:
#IMPORTS
from xml.dom import minidom
import urllib
#IMPORTING XML FILE
xmldocurl = 'http://gamebattles.majorleaguegaming.com/ps4/call-of-duty-ghosts/team/TeamCrYpToNGamingEU/stats.xml'
settings = urllib.urlopen(xmldocurl).read()
final = minidom.parseString(settings)
date = final.getElementsByTagName('date')
for node in date:
test = node.getAttribute('timestamp')
print test
This returns the following:
1411853400
1411850700
1411847100
1411843500
1411839000
1411837200
1411831800
1411828200
1411822800
1411820100
I only want it to return the timestamp for the first node under the heading recent matches. This code at the moment returns everything called timestamp but I only want a specific one.
How can I choose this.
Thanks
You need to get the recentMatches object and look at the date of the first match. One way to do that is:
#IMPORTS
from xml.dom import minidom
import urllib
#IMPORTING XML FILE
xmldocurl = 'http://gamebattles.majorleaguegaming.com/ps4/call-of-duty-ghosts/team/TeamCrYpToNGamingEU/stats.xml'
settings = urllib.urlopen(xmldocurl).read()
final = minidom.parseString(settings)
recentMatches = final.getElementsByTagName('recentMatches')[0]
for node in recentMatches.childNodes:
if node.nodeName == "match":
nodes = node.getElementsByTagName('url')
print nodes[0].childNodes[0].data
nodes = node.getElementsByTagName('date')
print nodes[0].getAttribute('timestamp')
break
This will iterate over the matches and get you the first date timestamp.
I receive xml strings from an external source that can contains unsanitized user contributed content.
The following xml string gave a ParseError in cElementTree:
>>> print repr(s)
'<Comment>dddddddd\x08\x08\x08\x08\x08\x08_____</Comment>'
>>> import xml.etree.cElementTree as ET
>>> ET.XML(s)
Traceback (most recent call last):
File "<pyshell#4>", line 1, in <module>
ET.XML(s)
File "<string>", line 106, in XML
ParseError: not well-formed (invalid token): line 1, column 17
Is there a way to make cElementTree not complain?
It seems to complain about \x08 you will need to escape that.
Edit:
Or you can have the parser ignore the errors using recover
from lxml import etree
parser = etree.XMLParser(recover=True)
etree.fromstring(xmlstring, parser=parser)
I was having the same error (with ElementTree). In my case it was because of encodings, and I was able to solve it without having to use an external library. Hope this helps other people finding this question based on the title. (reference)
import xml.etree.ElementTree as ET
parser = ET.XMLParser(encoding="utf-8")
tree = ET.fromstring(xmlstring, parser=parser)
EDIT: Based on comments, this answer might be outdated. But this did work back when it was answered...
This code snippet worked for me. I have an issue with the parsing batch of XML files. I had to encode them to 'iso-8859-5'
import xml.etree.ElementTree as ET
tree = ET.parse(filename, parser = ET.XMLParser(encoding = 'iso-8859-5'))
See this answer to another question and the according part of the XML spec.
The backspace U+0008 is an invalid character in XML documents. It must be represented as escaped entity and cannot occur plainly.
If you need to process this XML snippet, you must replace \x08 in s before feeding it into an XML parser.
None of the above fixes worked for me. The only thing that worked was to use BeautifulSoup instead of ElementTree as follows:
from bs4 import BeautifulSoup
with open("data/myfile.xml") as fp:
soup = BeautifulSoup(fp, 'xml')
Then you can search the tree as:
soup.find_all('mytag')
This is most probably an encoding error. For example I had an xml file encoded in UTF-8-BOM (checked from the Notepad++ Encoding menu) and got similar error message.
The workaround (Python 3.6)
import io
from xml.etree import ElementTree as ET
with io.open(file, 'r', encoding='utf-8-sig') as f:
contents = f.read()
tree = ET.fromstring(contents)
Check the encoding of your xml file. If it is using different encoding, change the 'utf-8-sig' accordingly.
After lots of searching through the entire WWW, I only found out that you have to escape certain characters if you want your XML parser to work! Here's how I did it and worked for me:
escape_illegal_xml_characters = lambda x: re.sub(u'[\x00-\x08\x0b\x0c\x0e-\x1F\uD800-\uDFFF\uFFFE\uFFFF]', '', x)
And use it like you'd normally do:
ET.XML(escape_illegal_xml_characters(my_xml_string)) #instead of ET.XML(my_xml_string)
A solution for gottcha for me, using Python's ElementTree... this has the invalid token error:
# -*- coding: utf-8 -*-
import xml.etree.ElementTree as ET
xml = u"""<?xml version='1.0' encoding='utf8'?>
<osm generator="pycrocosm server" version="0.6"><changeset created_at="2017-09-06T19:26:50.302136+00:00" id="273" max_lat="0.0" max_lon="0.0" min_lat="0.0" min_lon="0.0" open="true" uid="345" user="john"><tag k="test" v="Съешь же ещё этих мягких французских булок да выпей чаю" /><tag k="foo" v="bar" /><discussion><comment data="2015-01-01T18:56:48Z" uid="1841" user="metaodi"><text>Did you verify those street names?</text></comment></discussion></changeset></osm>"""
xmltest = ET.fromstring(xml.encode("utf-8"))
However, it works with the addition of a hyphen in the encoding type:
<?xml version='1.0' encoding='utf-8'?>
Most odd. Someone found this footnote in the python docs:
The encoding string included in XML output should conform to the
appropriate standards. For example, “UTF-8” is valid, but “UTF8” is
not.
I have been in stuck with similar problem. Finally figured out the what was the root cause in my particular case. If you read the data from multiple XML files that lie in same folder you will parse also .DS_Store file.
Before parsing add this condition
for file in files:
if file.endswith('.xml'):
run_your_code...
This trick helped me as well
lxml solved the issue, in my case
from lxml import etree
for _, elein etree.iterparse(xml_file, tag='tag_i_wanted', unicode='utf-8'):
print(ele.tag, ele.text)
in another case,
parser = etree.XMLParser(recover=True)
tree = etree.parse(xml_file, parser=parser)
tags_needed = tree.iter('TAG NAME')
Thanks to theeastcoastwest
Python 2.7
In my case I got the same error. (using Element Tree)
I had to add these lines:
import xml.etree.ElementTree as ET
from lxml import etree
parser = etree.XMLParser(recover=True,encoding='utf-8')
xml_file = ET.parse(path_xml,parser=parser)
Works in pyhton 3.10.2
What helped me with that error was Juan's answer - https://stackoverflow.com/a/20204635/4433222
But wasn't enough - after struggling I found out that an XML file needs to be saved with UTF-8 without BOM encoding.
The solution wasn't working for "normal" UTF-8.
The only thing that worked for me is I had to add mode and encoding while opening the file like below:
with open(filenames[0], mode='r',encoding='utf-8') as f:
readFile()
Otherwise it was failing every time with invalid token error if I simply do this:
f = open(filenames[0], 'r')
readFile()
this error is coming while you are giving a link . but first you have to find the string of that link
response = requests.get(Link)
root = cElementTree.fromstring(response.content)
I tried the other solutions in the answers here but had no luck. Since I only needed to extract the value from a single xml node I gave in and wrote my function to do so:
def ParseXmlTagContents(source, tag, tagContentsRegex):
openTagString = "<"+tag+">"
closeTagString = "</"+tag+">"
found = re.search(openTagString + tagContentsRegex + closeTagString, source)
if found:
start = found.regs[0][0]
end = found.regs[0][1]
return source[start+len(openTagString):end-len(closeTagString)]
return ""
Example usage would be:
<?xml version="1.0" encoding="utf-16"?>
<parentNode>
<childNode>123</childNode>
</parentNode>
ParseXmlTagContents(xmlString, "childNode", "[0-9]+")