Read the properties of HDF file in Python - python

I have a problem reading hdf file in pandas. As of now, I don't know the keys of the file.
How do I read the file [data.hdf] in such a case? And, my file is .hdf not .h5 , Does it make a difference it terms data fetching?
I see that you need a 'group identifier in the store'
pandas.io.pytables.read_hdf(path_or_buf, key, **kwargs)
I was able to get the metadata from pytables
File(filename=data.hdf, title='', mode='a', root_uep='/', filters=Filters(complevel=0, shuffle=False, fletcher32=False, least_significant_digit=None))
/ (RootGroup) ''
/UID (EArray(317,)) ''
atom := StringAtom(itemsize=36, shape=(), dflt='')
maindim := 0
flavor := 'numpy'
byteorder := 'irrelevant'
chunkshape := (100,)
/X Y (EArray(8319, 2, 317)) ''
atom := Float32Atom(shape=(), dflt=0.0)
maindim := 0
flavor := 'numpy'
byteorder := 'little'
chunkshape := (1000, 2, 100)
How do I make it readable via pandas?

First (.hdf or .h5) doesn't make any difference.
Second, I'm not sure about the pandas, but I read the HDF5 key like:
import h5py
h5f = h5py.File("test.h5", "r")
h5f.keys()
or
h5f.values()

Docs are here. However you will jot be able to directly read the format you show with pandas. You need to use PyTables to read it in. pandas can read in PyTables Table format directly even without the meta data that pandas uses.

pyhdf will be alternative option for hdf file in python
you can read and see keys from:
import pyhdf
hdf = pyhdf.SD.SD('file.hdf')
hdf.datasets()
I hope it will help you!
gud luck

You can use this simple function to see the variable names of any the HDF file (only works for the variables in the scientific mode)
from pyhdf.SD import *
def HDFvars(File):
"""
Extract variable names for an hdf file
"""
# hdfFile = SD.SD(File, mode=1)
hdfFile = SD(File, mode=1)
dsets = hdfFile.datasets()
k = []
for key in dsets.keys():
k.append(key)
k.sort()
hdfFile.end() # close the file
return k
If the variables aren't in the scientific mode, you can try whit pyhdf.V using the following program that shows the contents of the vgroups contained inside
any HDF file.
from pyhdf.HDF import *
from pyhdf.V import *
from pyhdf.VS import *
from pyhdf.SD import *
def describevg(refnum):
# Describe the vgroup with the given refnum.
# Open vgroup in read mode.
vg = v.attach(refnum)
print "----------------"
print "name:", vg._name, "class:",vg._class, "tag,ref:",
print vg._tag, vg._refnum
# Show the number of members of each main object type.
print "members: ", vg._nmembers,
print "datasets:", vg.nrefs(HC.DFTAG_NDG),
print "vdatas: ", vg.nrefs(HC.DFTAG_VH),
print "vgroups: ", vg.nrefs(HC.DFTAG_VG)
# Read the contents of the vgroup.
members = vg.tagrefs()
# Display info about each member.
index = -1
for tag, ref in members:
index += 1
print "member index", index
# Vdata tag
if tag == HC.DFTAG_VH:
vd = vs.attach(ref)
nrecs, intmode, fields, size, name = vd.inquire()
print " vdata:",name, "tag,ref:",tag, ref
print " fields:",fields
print " nrecs:",nrecs
vd.detach()
# SDS tag
elif tag == HC.DFTAG_NDG:
sds = sd.select(sd.reftoindex(ref))
name, rank, dims, type, nattrs = sds.info()
print " dataset:",name, "tag,ref:", tag, ref
print " dims:",dims
print " type:",type
sds.endaccess()
# VS tag
elif tag == HC.DFTAG_VG:
vg0 = v.attach(ref)
print " vgroup:", vg0._name, "tag,ref:", tag, ref
vg0.detach()
# Unhandled tag
else:
print "unhandled tag,ref",tag,ref
# Close vgroup
vg.detach()
# Open HDF file in readonly mode.
filename = 'yourfile.hdf'
hdf = HDF(filename)
# Initialize the SD, V and VS interfaces on the file.
sd = SD(filename)
vs = hdf.vstart()
v = hdf.vgstart()
# Scan all vgroups in the file.
ref = -1
while 1:
try:
ref = v.getid(ref)
print ref
except HDF4Error,msg: # no more vgroup
break
describevg(ref)

Related

Weird sequence when writing into txt document

Hi everyone this is my first time here, and I am a beginner in Python. I am in the middle of writing a program that returns a txt document containing information about a stock (Watchlist Info.txt), based on the input of another txt document containing the company names (Watchlist).
To achieve this, I have written 3 functions, of which 2 functions reuters_ticker() and stock_price() are completed as shown below:
def reuters_ticker(desired_search):
#from company name execute google search for and return reuters stock ticker
try:
from googlesearch import search
except ImportError:
print('No module named google found')
query = desired_search + ' reuters'
for j in search(query, tld="com.sg", num=1, stop=1, pause=2):
result = j
ticker = re.search(r'\w+\.\w+$', result)
return ticker.group()
Stock Price:
def stock_price(company, doc=None):
ticker = reuters_ticker(company)
request = 'https://www.reuters.com/companies/' + ticker
raw_main = pd.read_html(request)
data1 = raw_main[0]
data1.set_index(0, inplace=True)
data1 = data1.transpose()
data2 = raw_main[1]
data2.set_index(0, inplace=True)
data2 = data2.transpose()
stock_info = pd.concat([data1,data2], axis=1)
if doc == None:
print(company + '\n')
print('Previous Close: ' + str(stock_info['Previous Close'][1]))
print('Forward PE: ' + str(stock_info['Forward P/E'][1]))
print('Div Yield(%): ' + str(stock_info['Dividend (Yield %)'][1]))
else:
from datetime import date
with open(doc, 'a') as output:
output.write(date.today().strftime('%d/%m/%y') + '\t' + str(stock_info['Previous Close'][1]) + '\t' + str(stock_info['Forward P/E'][1]) + '\t' + '\t' + str(stock_info['Dividend (Yield %)'][1]) + '\n')
output.close()
The 3rd function, watchlist_report(), is where I am getting problems with writing the information in the format as desired.
def watchlist_report(watchlist):
with open(watchlist, 'r') as companies, open('Watchlist Info.txt', 'a') as output:
searches = companies.read()
x = searches.split('\n')
for i in x:
output.write(i + ':\n')
stock_price(i, doc='Watchlist Info.txt')
output.write('\n')
When I run watchlist_report('Watchlist.txt'), where Watchlist.txt contains 'Apple' and 'Facebook' each on new lines, my output is this:
26/04/20 275.03 22.26 1.12
26/04/20 185.13 24.72 --
Apple:
Facebook:
Instead of what I want and would expect based on the code I have written in watchlist_report():
Apple:
26/04/20 275.03 22.26 1.12
Facebook:
26/04/20 185.13 24.72 --
Therefore, my questions are:
1) Why is my output formatted this way?
2) Which part of my code do I have to change to make the written output in my desired format?
Any other suggestions about how I can clean my code and any libraries I can use to make my code nicer are also appreciated!
You handle two different file-handles - the file-handle inside your watchlist_report gets closed earlier so its being written first, before the outer functions file-handle gets closed, flushed and written.
Instead of creating a new open(..) in your function, pass the current file handle:
def watchlist_report(watchlist):
with open(watchlist, 'r') as companies, open('Watchlist Info.txt', 'a') as output:
searches = companies.read()
x = searches.split('\n')
for i in x:
output.write(i + ':\n')
stock_price(i, doc = output) # pass the file handle
output.write('\n')
Inside def stock_price(company, doc=None): use the provided filehandle:
def stock_price(company, output = None): # changed name here
# [snip] - removed unrelated code for this answer for brevity sake
if output is None: # check for None using IS
print( ... ) # print whatever you like here
else:
from datetime import date
output.write( .... ) # write whatever you want it to write
# output.close() # do not close, the outer function does this
Do not close the file handle in the inner function, the context handling with(..) of the outer function does that for you.
The main takeaway for file handling is that things you write(..) to your file are not neccessarily placed there immediately. The filehandler chooses when to actually persist data to your disk, the latests it does that is when it goes out of scope (of the context handler) or when its internal buffer reaches some threshold so it "thinks" it is now prudent to alter to data on your disc. See How often does python flush to a file? for more infos.

Rebuilding my wave file with struct

My goal is to read a wave file and edit the data of it by adding a random number to each bit of data in the range of -1 to 1 with the hope of creating some distortion and then saving it as an edited wave file. I read and edit the wave file like so:
riffTag = fileIn.read(4)
if riffTag != 'RIFF':
print 'not a valid RIFF file'
exit(1)
riffLength = struct.unpack('<L', fileIn.read(4))[0]
riffType = fileIn.read(4)
if riffType != 'WAVE':
print 'not a WAV file'
exit(1)
# now read children
while fileIn.tell() < 8 + riffLength:
tag = fileIn.read(4)
length = struct.unpack('<L', fileIn.read(4))[0]
if tag == 'fmt ': # format element
fmtData = fileIn.read(length)
fmt, numChannels, sampleRate, byteRate, blockAlign, bitsPerSample = struct.unpack('<HHLLHH', fmtData)
stHeaderFields['AudioFormat'] = fmt
stHeaderFields['NumChannels'] = numChannels
stHeaderFields['SampleRate'] = sampleRate
stHeaderFields['ByteRate'] = byteRate
stHeaderFields['BlockAlign'] = blockAlign
stHeaderFields['BitsPerSample'] = bitsPerSample
elif tag == 'data': # data element
rawData = fileIn.read(length)
else: # some other element, just skip it
fileIn.seek(length, 1)
numChannels = stHeaderFields['NumChannels']
# some sanity checks
assert(stHeaderFields['BitsPerSample'] == 16)
assert(numChannels * stHeaderFields['BitsPerSample'] == blockAlign * 8)
samples = []
edited_samples = []
for offset in range(0, len(rawData), blockAlign):
samples.append(struct.unpack('<h', rawData[offset:offset+blockAlign]))
for sample in samples:
edited_samples.append(sample[0] + random.randint(-1, 1))
After I've done this I try to save the data is a new edited wave file by doing the following:
foo = []
for sample in edited_samples:
foo.append(struct.pack('<h', int(sample)))
with open(fileIn.name + ' edited.wav', 'w') as file_out:
file_out.write('RIFF')
file_out.write(struct.pack('<L', riffLength))
file_out.write('WAVE')
file_out.write(ur'fmt\u0020')
file_out.write(struct.pack('<H', fmt))
file_out.write(struct.pack('<H', numChannels))
file_out.write(struct.pack('<L', sampleRate))
file_out.write(struct.pack('<L', byteRate))
file_out.write(struct.pack('<H', blockAlign))
file_out.write(struct.pack('<H', bitsPerSample))
file_out.write('data')
for item in foo:
file_out.write(item)
While it doesn't give me any errors I can't play the new wave file in a media player. When I try open my new wave file I get a crash on the line fmt, numChannels, sampleRate, byteRate, blockAlign, bitsPerSample = struct.unpack('<HHLLHH', fmtData) with the error error: unpack requires a string argument of length 16. I imagine I'm building the wave file wrong. How do I build it correctly?
Unless you're intent on writing the support for .wav files yourself for some other reason (getting experience with dealing with binary files, etc.), don't do this. Python comes with the wave module that handles all of the file format issues and lets you just work with the data.

Python - Changing File Object within function

Sorry - My questions is how can I change a file object within a function from a different function?
I've been trying to work out this error in my first python script for too long now, Dr Google and the forums aren't helping me too much, but I'm hoping you can.
I have a looping function that generates alot of data and I would like to output it to a text file, and create a new text file after the third loop.
I have 2 functions defined, one to create the data hashes, the other to create the new files.
The new files are being created as expected (aaa.txt, baa.txt...etc) but the "hashit" function only ever writes to the first file (aaa.txt) even though the others are being created.
I have tried fo.close() fo.flush(), as well as referencing fo in the functions but can't seem to make it work. Also I've moved the fo.write from the function to the main body.
I have included a cut down version of the code that I've been using to troubleshoot this issue, the real one has several more loops increasing the string length.
Thanks in advance
import smbpasswd, hashlib
base = '''abcdefghijklmnopqrstuvwxyz '''
# base length 95
print(base)
baselen = len(base)
name = 'aaa.txt'
fo = open(name, "w")
print "Name of the file: ", fo.name
print "Closed or not : ", fo.closed
print "Opening mode : ", fo.mode
print "Softspace flag : ", fo.softspace
pw01 = 0
pw02 = 0
pw03 = 0
def hashit(passwd):
#2
# Need to install module
# sudo apt-get install python-smbpasswd
hex_dig_lm = smbpasswd.lmhash(passwd)
hex_dig_ntlm = smbpasswd.nthash(passwd)
#print '%s:%s' % smbpasswd.hash(passwd)
hash_md5 = hashlib.md5(passwd)
hex_dig_md5 = hash_md5.hexdigest()
print(passwd)
print(hex_dig_lm)
print(hex_dig_ntlm)
print(hex_dig_md5)
hashstring = passwd +","+ hex_dig_lm +","+ hex_dig_md5 + '\n'
fo.write(hashstring);
def newfile(name):
fo.flush()
fo = open(name, "a")
print("-------newfile------")
print "Name of the file: ", fo.name
print "Closed or not : ", fo.closed
print('NewFile : ' + name)
raw_input("\n\nPress the enter key to exit.")
# add 3rd digit
while (pw03 < baselen):
pwc03 = base[pw03]
name = pwc03 + 'aa.txt'
fo.close
newfile(name);
pw03 += 1
while (pw02 < baselen):
pwc02 = base[pw02]
pw02 += 1
while (pw01 < baselen):
pwc01 = base[pw01]
pw01 += 1
passwd = pwc03 + pwc02 + pwc01
hashit(passwd);
else:
pw01 = 0
else:
pw02 = 0
else:
pw03 = 0
In your newfile() function, add this line first:
global fo

Userfriendly way of handling config files in python?

I want to write a program that sends an e-mail to one or more specified recipients when a certain event occurs. For this I need the user to write the parameters for the mail server into a config. Possible values are for example: serveradress, ports, ssl(true/false) and a list of desired recipients.
Whats the user-friendliest/best-practice way to do this?
I could of course use a python file with the correct parameters and the user has to fill it out, but I wouldn't consider this user friendly. I also read about the 'config' module in python, but it seems to me that it's made for creating config files on its own, and not to have users fill the files out themselves.
Are you saying that the fact that the config file would need to be valid Python makes it unfriendly? It seems like having lines in a file like:
server = 'mail.domain.com'
port = 25
...etc would be intuitive enough while still being valid Python. If you don't want the user to have to know that they have to quote strings, though, you might go the YAML route. I use YAML pretty much exclusively for config files and find it very intuitive, and it would also be intuitive for an end user I think (though it requires a third-party module - PyYAML):
server: mail.domain.com
port: 25
Having pyyaml load it is simple:
>>> import yaml
>>> yaml.load("""a: 1
... b: foo
... """)
{'a': 1, 'b': 'foo'}
With a file it's easy too.
>>> with open('myconfig.yaml', 'r') as cfile:
... config = yaml.load(cfile)
...
config now contains all of the parameters.
I doesn't matter technically proficient your users are; you can count on them to screw up editing a text file. (They'll save it in the wrong place. They'll use MS Word to edit a text file. They'll make typos.) I suggest making a gui that validates the input and creates the configuration file in the correct format and location. A simple gui created in Tkinter would probably fit your needs.
I've been using ConfigParser. It's designed to read .ini style files that have:
[section]
option = value
It's quite easy to use and the documentation is pretty easy to read. Basically you just load the whole file into a ConfigParser object:
import ConfigParser
config = ConfigParser.ConfigParser()
config.read('configfile.txt')
Then you can make sure the users haven't messed anything up by checking the options. I do so with a list:
OPTIONS =
['section,option,defaultvalue',
.
.
.
]
for opt in OPTIONS:
section,option,defaultval = opt.split(',')
if not config.has_option(section,option):
print "Missing option %s in section %s" % (option,section)
Getting the values out is easy too.
val = config.get('section','option')
And I also wrote a function that creates a sample config file using that OPTIONS list.
new_config = ConfigParser.ConfigParser()
for opt in OPTIONS:
section,option,defaultval = opt.split(',')
if not new_config.has_section(section):
new_config.add_section(section)
new_config.set(section, option, defaultval)
with open("sample_configfile.txt", 'wb') as newconfigfile:
new_config.write(newconfigfile)
print "Generated file: sample_configfile.txt"
What are the drawbacks of such a solution:
ch = 'serveradress = %s\nport = %s\nssl = %s'
a = raw_input("Enter the server's address : ")
b = 'a'
bla = "\nEnter the port : "
while not all(x.isdigit() for x in b):
b = raw_input(bla)
bla = "Take care: you must enter digits exclusively\n"\
+" Re-enter the port (digits only) : "
c = ''
bla = "\nChoose the ssl option (t or f) : "
while c not in ('t','f'):
c = raw_input(bla)
bla = "Take care: you must type f or t exclusively\n"\
+" Re-choose the ssl option : "
with open('configfile.txt','w') as f:
f.write(ch % (a,b,c))
.
PS
I've read in the jonesy's post that the value in a config file may have to be quoted. If so, and you want the user not to have to write him/her-self the quotes, you simply add
a = a.join('""')
b = b.join('""')
c = c.join('""')
.
EDIT
ch = 'serveradress = %s\nport = %s\nssl = %s'
d = {0:('',
"Enter the server's address : "),
1:("Take care: you must enter digits exclusively",
"Enter the port : "),
2:("Take care: you must type f or t exclusively",
"Choose the ssl option (t or f) : ") }
def func(i,x):
if x is None:
return False
if i==0:
return True
elif i==1:
try:
ess = int(x)
return True
except:
return False
elif i==2:
if x in ('t','f'):
return True
else:
return False
li = len(d)*[None]
L = range(len(d))
while True:
for n in sorted(L):
bla = d[n][1]
val = None
while not func(n,val):
val = raw_input(bla)
bla = '\n '.join(d[n])
li[n] = val.join('""')
decision = ''
disp = "\n====== If you choose to process, =============="\
+"\n the content of the file will be :\n\n" \
+ ch % tuple(li) \
+ "\n==============================================="\
+ "\n\nDo you want to process (type y) or to correct (type c) : "
while decision not in ('y','c'):
decision = raw_input(disp)
disp = "Do you want to process (type y) or to correct (type c) ? : "
if decision=='y':
break
else:
diag = False
while not diag:
vi = '\nWhat lines do you want to correct ?\n'\
+'\n'.join(str(j)+' - '+line for j,line in enumerate((ch % tuple(li)).splitlines()))\
+'\nType numbers of lines belonging to range(0,'+str(len(d))+') separated by spaces) :\n'
to_modify = raw_input(vi)
try:
diag = all(int(entry) in xrange(len(d)) for entry in to_modify.split())
L = [int(entry) for entry in to_modify.split()]
except:
diag = False
with open('configfile.txt','w') as f:
f.write(ch % tuple(li))
print '-*- Recording of the config file : done -*-'

split a pdf based on outline

i would like to use pyPdf to split a pdf file based on the outline where each destination in the outline refers to a different page within the pdf.
example outline:
main --> points to page 1
sect1 --> points to page 1
sect2 --> points to page 15
sect3 --> points to page 22
it is easy within pyPdf to iterate over each page of the document or each destination in the document's outline; however, i cannot figure out how to get the page number where the destination points.
does anybody know how to find the referencing page number for each destination in the outline?
I figured it out:
class Darrell(pyPdf.PdfFileReader):
def getDestinationPageNumbers(self):
def _setup_outline_page_ids(outline, _result=None):
if _result is None:
_result = {}
for obj in outline:
if isinstance(obj, pyPdf.pdf.Destination):
_result[(id(obj), obj.title)] = obj.page.idnum
elif isinstance(obj, list):
_setup_outline_page_ids(obj, _result)
return _result
def _setup_page_id_to_num(pages=None, _result=None, _num_pages=None):
if _result is None:
_result = {}
if pages is None:
_num_pages = []
pages = self.trailer["/Root"].getObject()["/Pages"].getObject()
t = pages["/Type"]
if t == "/Pages":
for page in pages["/Kids"]:
_result[page.idnum] = len(_num_pages)
_setup_page_id_to_num(page.getObject(), _result, _num_pages)
elif t == "/Page":
_num_pages.append(1)
return _result
outline_page_ids = _setup_outline_page_ids(self.getOutlines())
page_id_to_page_numbers = _setup_page_id_to_num()
result = {}
for (_, title), page_idnum in outline_page_ids.iteritems():
result[title] = page_id_to_page_numbers.get(page_idnum, '???')
return result
pdf = Darrell(open(PATH-TO-PDF, 'rb'))
template = '%-5s %s'
print template % ('page', 'title')
for p,t in sorted([(v,k) for k,v in pdf.getDestinationPageNumbers().iteritems()]):
print template % (p+1,t)
This is just what I was looking for. Darrell's additions to PdfFileReader should be part of PyPDF2.
I wrote a little recipe that uses PyPDF2 and sejda-console to split a PDF by bookmarks. In my case there are several Level 1 sections that I want to keep together. This script allows me to do that and give the resulting files meaningful names.
import operator
import os
import subprocess
import sys
import time
import PyPDF2 as pyPdf
# need to have sejda-console installed
# change this to point to your installation
sejda = 'C:\\sejda-console-1.0.0.M2\\bin\\sejda-console.bat'
class Darrell(pyPdf.PdfFileReader):
...
if __name__ == '__main__':
t0= time.time()
# get the name of the file to split as a command line arg
pdfname = sys.argv[1]
# open up the pdf
pdf = Darrell(open(pdfname, 'rb'))
# build list of (pagenumbers, newFileNames)
splitlist = [(1,'FrontMatter')] # Customize name of first section
template = '%-5s %s'
print template % ('Page', 'Title')
print '-'*72
for t,p in sorted(pdf.getDestinationPageNumbers().iteritems(),
key=operator.itemgetter(1)):
# Customize this to get it to split where you want
if t.startswith('Chapter') or \
t.startswith('Preface') or \
t.startswith('References'):
print template % (p+1, t)
# this customizes how files are renamed
new = t.replace('Chapter ', 'Chapter')\
.replace(': ', '-')\
.replace(': ', '-')\
.replace(' ', '_')
splitlist.append((p+1, new))
# call sejda tools and split document
call = sejda
call += ' splitbypages'
call += ' -f "%s"'%pdfname
call += ' -o ./'
call += ' -n '
call += ' '.join([str(p) for p,t in splitlist[1:]])
print '\n', call
subprocess.call(call)
print '\nsejda-console has completed.\n\n'
# rename the split files
for p,t in splitlist:
old ='./%i_'%p + pdfname
new = './' + t + '.pdf'
print 'renaming "%s"\n to "%s"...'%(old, new),
try:
os.remove(new)
except OSError:
pass
try:
os.rename(old, new)
print' succeeded.\n'
except:
print' failed.\n'
print '\ndone. Spliting took %.2f seconds'%(time.time() - t0)
Small update to #darrell class to be able to parse UTF-8 outlines, which I post as answer because comment would be hard to read.
Problem is in pyPdf.pdf.Destination.title which may be returned in two flavors:
pyPdf.generic.TextStringObject
pyPdf.generic.ByteStringObject
so that output from _setup_outline_page_ids() function returns also two different types for title object, which fails with UnicodeDecodeError if outline title contains anything then ASCII.
I added this code to solve the problem:
if isinstance(title, pyPdf.generic.TextStringObject):
title = title.encode('utf-8')
of whole class:
class PdfOutline(pyPdf.PdfFileReader):
def getDestinationPageNumbers(self):
def _setup_outline_page_ids(outline, _result=None):
if _result is None:
_result = {}
for obj in outline:
if isinstance(obj, pyPdf.pdf.Destination):
_result[(id(obj), obj.title)] = obj.page.idnum
elif isinstance(obj, list):
_setup_outline_page_ids(obj, _result)
return _result
def _setup_page_id_to_num(pages=None, _result=None, _num_pages=None):
if _result is None:
_result = {}
if pages is None:
_num_pages = []
pages = self.trailer["/Root"].getObject()["/Pages"].getObject()
t = pages["/Type"]
if t == "/Pages":
for page in pages["/Kids"]:
_result[page.idnum] = len(_num_pages)
_setup_page_id_to_num(page.getObject(), _result, _num_pages)
elif t == "/Page":
_num_pages.append(1)
return _result
outline_page_ids = _setup_outline_page_ids(self.getOutlines())
page_id_to_page_numbers = _setup_page_id_to_num()
result = {}
for (_, title), page_idnum in outline_page_ids.iteritems():
if isinstance(title, pyPdf.generic.TextStringObject):
title = title.encode('utf-8')
result[title] = page_id_to_page_numbers.get(page_idnum, '???')
return result
Darrell's class can be modified slightly to produce a multi-level table of contents for a pdf (in the manner of pdftoc in the pdftk toolkit.)
My modification adds one more parameter to _setup_page_id_to_num, an integer "level" which defaults to 1. Each invocation increments the level. Instead of storing just the page number in the result, we store the pair of page number and level. Appropriate modifications should be applied when using the returned result.
I am using this to implement the "PDF Hacks" browser-based page-at-a-time document viewer with a sidebar table of contents which reflects LaTeX section, subsection etc bookmarks. I am working on a shared system where pdftk can not be installed but where python is available.
A solution 10 years later for newer python and PyPDF:
from PyPDF2 import PdfReader, PdfWriter
filename = "main.pdf"
with open(filename, "rb") as f:
r = PdfReader(f)
bookmarks = list(map(lambda x: (x.title, r.get_destination_page_number(x)), r.outline))
print(bookmarks)
for i, b in enumerate(bookmarks):
begin = b[1]
end = bookmarks[i+1][1] if i < len(bookmarks) - 1 else len(r.pages)
# print(len(r.pages[begin:end]))
name = b[0] + ".pdf"
print(f"{name=}: {begin=}, {end=}")
with open(name, "wb") as f:
w = PdfWriter(f)
for p in r.pages[begin:end]:
w.add_page(p)
w.write(f)

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