I want to use the python wrapper from igraph. Compiling igraph and installing python-igraph works fine, but when I try to import igraph I get the following error (see image link below):
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python3.4/dist-packages/igraph/__init__.py", line 34, in <module>
from igraph._igraph import *
ImportError: /usr/local/lib/python3.4/dist-packages/igraph/_igraph.cpython-34m.so: undefined symbol: igraph_gomory_hu_tree
Error message screenshot
I also had some trouble with igraph and python, my solution:
delete your currently installed version of igraph and python-igraph
create a new virtualenv with pyvenv-3.4 yourVenv
activate the virtualenv . yourVenv/bin/activate
install python-igraph within the virtualenv pip install python-igraph
That one works for me.
Try using the 'wraptext' import that comes with python. Then use .fill() to wrap the text over the next line. That might work.
It's because python doesn't find the igraph library. You can simply export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib/ (or wherever the file libigraph.so is located on your system).
FYI: Tried for more than a day with all kinds of resources online for installing python-igraph on mac. And I also wasn't able to import graph in .py file or .ipynb. Though it did allow me to import igraph in terminal when launching python. My solution is to make a virtual environment, conda install -c conda-forge python-igraph, then switch python from version 3.8 (which never passes the igraph.test.run_tests, Failed = 2) to 3.5 (passed the test). Hope it helps.
Related
I have recently bought a new laptop and was viewing some python projects of mine which I made on my pc. For one of them I use the python-bitvavo-api library which I installed using pip3 install python-bitvavo-api. The version I installed is 1.2.2 which is the latest on their website.
Now when I try to import it using this code: from python_bitvavo_api.bitvavo import Bitvavo, I get the following error:
Traceback (most recent call last):
File "C:\Users\indig\OneDrive\Documenten\Python Projects\Personal\Cryptone\Cryptone.py", line 6, in <module>
from python_bitvavo_api.bitvavo import Bitvavo
ModuleNotFoundError: No module named 'python_bitvavo_api'
I read online that it may occur when using multiple python versions, Im only using 1 and thats python 3.7
Btw. I have the same error with the Pillow module, so it might be a setting in visual studio that I dont know of. Anyway, someone please help. If you need more details please ask.
How are you running it? From the terminal or from VS?
You can also check the installed libraries running the command pip list
for my master thesis, I have to render some maps from OpenStreetMap information. Unfortunately, I'm not able to install mapnik.
In the manual (https://github.com/mapnik/mapnik/wiki/WindowsInstallation) it said I should Add ";C:\mapnik-v2.2.0\lib" to the PATH variable. In my case it is "C:\Users\User\Mapnik\lib". I cloned the git repo and updated it to v3.0.23. Like it said here: https://mapnik.org/pages/downloads.html
But in this location, I don't have lib. Also, I don't have bin. So I'm a little bit confused about how to install mapnik.
I would really appreciate your help.
Some more Information: OS is windows 10, For Python, I'm using Anaconda with a 2.7 Instance just for mapnik... even if I read, that I could go with python 3. For the rest of my code, I go with Python 3.8. For sure I would prefer to stay at 3.8 but if it only works with 2.7 I would also use that.
Error message: "(Mapnik) C:\Users\User\Mapnik\demo\python>python rundemo.py
Traceback (most recent call last):
File "rundemo.py", line 25, in
import mapnik
ImportError: No module named mapnik"
I am using Python 3.6 on Windows 7 and I have a problem with the igraph package. I was having errors while I was trying to install it using pip, so I decided to install it from the .whl file. Unfortunately, I couldn't find version appropriate for Python 3.6, so I downloaded another version and changed the name of the file so that it looked like it was designed for Python 3.6. The installation was successful, but when I am trying to run a script which uses the igraph module - a following error message appears:
Traceback (most recent call last):
File "C:/Users/Jarek/Documents/Studia/Programowanie/Python na studiach/Analysis of Unstructured Data/List2.py", line 6, in <module>
import igraph as ig
File "C:\Users\Jarek\AppData\Local\Programs\Python\Python36-32\lib\site-packages\igraph\__init__.py", line 34, in <module>
from igraph._igraph import *
ModuleNotFoundError: No module named 'igraph._igraph'
I haw a very similar issue under Python igraph import error on Windows
but there was no answer there. I have also seen
No module named 'igraph._igraph' but suggestion given there does not help me (or I do not know how to properly apply it).
Any help will be greatly appreciated. Thanks in advance.
I couldn't find version appropriate for Python 3.6, so I downloaded another version and changed the name of the file so that it looked like it was designed for Python 3.6.
So the trick didn't work. Use Python 2.6 or 2.7. Or compile from sources.
I'm currently trying to install the Python package spacepy due to its ability to read CDF files, along with a few other useful functions. However, any time I try to install this module I receive a myriad of errors - whether I try to install it via Anaconda, command prompt, or by downloading the package manually and running setup.py from the package directory. Currently, I've spent hours trying to chase down these errors, but as I'm not a programmer it's been slow going.
I've managed to "install" it, however the module throws an error when trying to load it:
Traceback (most recent call last):
File "<ipython-input-1-4bcf91e29885>", line 1, in <module>
import spacepy
File "C:\Anaconda\lib\site-packages\spacepy\__init__.py", line 329, in <module>
_read_config(rcfile)
File "C:\Anaconda\lib\site-packages\spacepy\__init__.py", line 297, in _read_config
_write_defaults(rcfile, defaults)
File "C:\Anaconda\lib\site-packages\spacepy\__init__.py", line 236, in _write_defaults
key=k, value=defaults[k], ver=__version__))
IOError: [Errno 0] Error
...and so I don't believe it's been installed properly, and one or more of the errors from the initial build is causing issues.
This package has a number of dependencies, most being other Python modules. The only one that the installer would be unable to do itself would be the Fortran compiler (for which I have installed myself using MinGW), however this shouldn't prevent the package from installing.
Here is the complete log of errors that I recieve when trying to force-reinstall it via the command prompt:
python -m pip install --upgrade --force-reinstall spacepy
So it turns out that, among a few smaller errors with the dependencies here and there (that could be fixed just by following the errors thrown), the major issue was the version of numpy. Spacepy was designed for numpy v1.6, and doesn't seem to be backwards compatible with future versions of numpy (like the current v1.12).
Rolling back my version of numpy, as well as moving over to a linux virtual environment (which allowed complete control of modules and dependencies) eventually got spacepy on my system. Now I've just got to become more familiar with linux!
So i had python 2.7.2 on my server and i needed to update it to python 2.7.3. So i've tried to remove the 2.7.2 version and then install the new one using the sources. I wasn't able to remove the 2.7.2 version cause the system uses it to run crucial services on server, so i installed the 2.7.3 version in hope that after that i would be able to remove the old version. Still i cant remove the old version, although i'm able to execute the python 2.7.3 when i install any module i cant import it. I added the path to sys.path and i started finding the module but importing it causes another errors.
My python executes the /usr/local/bin/python which is the 2.7.3 version where the problems are.
If i try to execute python like this /usr/bin/python it executes the old version and everything works fine there, i can import the new installed modules.
So what can i do to make python 2.7.3 work?
I've searched a lot of tutorials and tried things like add the library in .pth files on python and i started finding the modules but when importing it i get errors like this:
>>> import numpy
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python2.7/dist-packages/numpy/__init__.py", line 137, in <module>
import add_newdocs
File "/usr/local/lib/python2.7/dist-packages/numpy/add_newdocs.py", line 9, in <module>
from numpy.lib import add_newdoc
File "/usr/local/lib/python2.7/dist-packages/numpy/lib/__init__.py", line 4, in <module>
from type_check import *
File "/usr/local/lib/python2.7/dist-packages/numpy/lib/type_check.py", line 8, in <module>
import numpy.core.numeric as _nx
File "/usr/local/lib/python2.7/dist-packages/numpy/core/__init__.py", line 5, in <module>
import multiarray
ImportError: /usr/local/lib/python2.7/dist-packages/numpy/core/multiarray.so: undefined symbol: PyUnicodeUCS4_AsUnicodeEscapeString
Thanks for the help
EDIT PROBLEM SOLvED
So to solve the missing import modules i created a .pth file under /usr/local/lib/python2.7/site-packages/ with the directories where the python modules are and the python starts to find them.
To fix the comptability problems you can install python from sources and specify the unicode doing ./configure --enable-unicode
more information here
Do not EVER mess with system python, EVER.
What you should do is install python 2.7.3 with a --prefix into your home directory, then use virtualenv -p /home/myuser/path/to/python.
In any case, using virtualenv to run your own application is almost always a good idea, as it avoids polluting the system package directories with libraries you use in your own applications.
It looks like the modules you've installed were built against your old version of Python, or at least a version incompatible with your newer installation. The import error you're seeing at the bottom is the numpy module searching for a symbol that is not in your build of 2.7.3. There is further information here.
If possible, it's usually way easier to upgrade Python with a package manager. That way, if anything on your system depends on Python, but does not need exactly 2.7.2, then Python can be easily upgraded without disturbing anything. I'm guessing that either your server doesn't have a newer version of Python available and you can't add new repositories, or you don't have access to a package manager. If using packages is possible, I would go ahead and remove what you've built from source (the command should be 'make clean' if Python uses GNU Make).
If that isn't an option, then there should be a way to compile Python, but not install it into system directories. Then you could add a symlink for users, and make sure that symlink has precedence in their path.
When installing python use the following steps
using prefix to specify the installation directory
./configure --prefix=/usr/bin/python
make
make install
Then everytime u run a new Terminal u have specify
export PATH="$PATH:/usr/bin/"
to tell where is the installation directory of Python
This way u can use any number of pythons
You can install python libs from R. It works for me.
For example, to install numpy library from R type:
system('python -m pip install -U numpy')