python help('modules') returns ImportError - python

Recently, (I have no idea when), I installed this package called pymol. Today when I was trying to copy a list of all my install modules, I encountered this error.
~/Projects$ python -c "help('modules')"
Please wait a moment while I gather a list of all available modules...
Error: unable to initalize the pymol.cmd module
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/pymol/cmd.py", line 117, in <module>
from chempy import io
ImportError: cannot import name io
I've tried
sudo pip uninstall pymol
This definitely worked... but it also definitely did not work. It removed the .egg, and pip list tells me it's not installed, but the tool is still there. I open a python prompt and import it with no problem. Now my question is, if I just delete the package, is there anything that could go wrong, (WCS I'm thinking kafkaesque broken dependency fixing for the rest of my natural life.) and is there a standardized, best practice to remove this, or any other package manually.

Related

Installed module via pip, still get ModuleNotFoundError

I'm trying to use w3af to start doing some routine security testing on a webapp that I'm using. Install instructions recommend cloning a git repo, then running the python code and seeing what dependencies are unmet then installing them. My first run yielded:
ModuleNotFoundError: No module named 'ConfigParser
OK, no problem, right?
$ pip install ConfigParser
Collecting ConfigParser
Downloading configparser-5.2.0-py3-none-any.whl (19 kB)
Installing collected packages: ConfigParser
Successfully installed ConfigParser-5.2.0
Mission accomplished, let's try again!
$ ./w3af_console
Traceback (most recent call last):
File "./w3af_console", line 12, in <module>
from w3af.core.controllers.dependency_check.dependency_check import dependency_check
File "/Users/westonx/bin/w3af/w3af/core/controllers/dependency_check/dependency_check.py", line 26, in <module>
from w3af.core.data.db.startup_cfg import StartUpConfig
File "/Users/westonx/bin/w3af/w3af/core/data/db/startup_cfg.py", line 22, in <module>
import ConfigParser
ModuleNotFoundError: No module named 'ConfigParser'
Hmmm. Could swear we took care of that. Let's run pip (maybe pip3?) again to be sure?
$ pip3 install ConfigParser
Requirement already satisfied: ConfigParser in /Users/westonx/.pyenv/versions/3.8.2/lib/python3.8/site-packages (5.2.0)
Seems good. Let's check to see if the import path includes that directory:
$ python -c "import sys; print('\n'.join(sys.path)); import ConfigParser;"
/Users/westonx/.pyenv/versions/3.8.2/lib/python38.zip
/Users/westonx/.pyenv/versions/3.8.2/lib/python3.8
/Users/westonx/.pyenv/versions/3.8.2/lib/python3.8/lib-dynload
/Users/westonx/.pyenv/versions/3.8.2/lib/python3.8/site-packages
Traceback (most recent call last):
File "<string>", line 1, in <module>
ModuleNotFoundError: No module named 'ConfigParser'
So... we know the sys.path includes the directory pip says the module is installed in, but when we import it, python insists it's not there.
configparser-5.2.0.dist-info and configparser.py are indeed in my ~/.pyenv/versions/3.8.2/lib/python3.8/site-packages directory, so it doesn't look like pip telling me something that's not true. But it sure looks like python is.
I'm using pyenv on MacOS 10.14, not sure if that makes a difference. Anyone have ideas of what next steps should be?
ConfigParser is a built in library in Python, but its name was changed to configparser in Python 3. It appears like w3af is still using Python 2 (I found this check that actively states it, but you never even got that far). So, to run this code, you need to run it with Python 2.
There are very many (thousands) of python3 compatibility issues with the w3af codebase. The ConfigParser issue is just the first one you hit - the codebase is full of references to outdated / unmaintained libraries, and has no support for python3 byte strings vs. unicode strings (b"" vs ""), which are used throughout the codebase.
There is a w4af project on Github, where someone has made the effort to port all the w3af code to python3, but you didn't hear that from me.

"cannot import name smbserver" when using impacket with smbrelayx.py

I know this is not an actual info-sec question, but I am having problems with getting the smbrealyx.py module to work. For some reason I get the following error when I try to execute the aforementioned python program.
Traceback (most recent call last):
File "smbrelayx.py", line 43, in <module>
from impacket import smbserver, smb, ntlm, dcerpc, version
File "/usr/lib/python2.7/dist-packages/impacket/smbserver.py", line 18, in <module>
from impacket import smbserver, version
ImportError: cannot import name smbserver
I am not familiar with python programming and I was hoping someone could help me fix this issue.
Looks like you have an old impacket version installed and you are using a newer version of smbrelayx.py.
First of it'd be great to know what version you have. You can easily do that by typing inside a Python interpreter the following:
from impacket import version
print version.BANNER
Assuming you have an old version, first of all it'd be great to remove the existing version. Depending on your Unix distro it might be just as easy as to remove the python-impacket package, or you can manually remove the library files by getting to know where those files are located:
import impacket
print impacket.__file__
That will give you the path where the library is installed. I'd suggest to remove the entire directory.
Now that your system is clean, you have two options:
Install a stable version: Grab the latest stable version from here. Uncompress it in a temp directory and then run:
python setup.py install
That will install the libraries and example scripts (e.g. smbrelayx.py)
Install the development version: You will need to git clone the development version first by running:
git clone https://github.com/CoreSecurity/impacket
Once the repo is cloned, inside the impacket directory type:
python setup.py install
That will install the libraries and example scripts (e.g. smbrelayx.py)

How to include NLTK in a python project

I tried downloading the latest NLTK release, and moving the nltk directory included in the zip file to my python project's working directory. Then I tried calling import nltk. Usually, to the best of my understanding, this would work - but I got this error:
Traceback (most recent call last):
File "/home/akf/PycharmProjects/comrad/main.py", line 32, in <module>
import plugins.nltk as plugins_nltk
File "/home/akf/PycharmProjects/comrad/plugins/nltk/__init__.py", line 89, in <module>
from nltk.internals import config_java
ImportError: No module named nltk.internals
It's accurate, I can't find this file either. What's the best way to do this?
For some libs, simply downloading the folder isn't going to work. You need more than just downloading it to actually install it, and before installing it make sure you have dependencies like numpy first.
Also managing dependencies with something like pip is better, you can track versions, upgrade etc, without having to manually removing and re-downloading the folder.
Seems you're working on Linux or UNIX? Here is a guide on how to install it http://www.nltk.org/install.html

cannot import Python-Twitter

I recently started out with python and i'm right now looking to do an app that shows my Twitter feed. So I downloaded a module(not sure if its called that) called Python-Twitter and installed it. But now everytime I try to import it I just get this error:
Traceback (most recent call last):
File "<pyshell#0>", line 1, in <module>
import twitter
File "build\bdist.win32\egg\twitter.py", line 38, in <module>
File "C:\Python27\lib\site-packages\requests_oauthlib-0.4.0-py2.7.egg\requests_oauthlib\__init__.py", line 1, in <module>
from .oauth1_auth import OAuth1
File "C:\Python27\lib\site-packages\requests_oauthlib-0.4.0-py2.7.egg\requests_oauthlib\oauth1_auth.py", line 4, in <module>
from requests.utils import to_native_string
ImportError: cannot import name to_native_string
Does anyone know what I might have done wrong with the install or something? Thx
In my case installing requests-oauthlib fixed it
sudo pip install requests-oauthlib
This is because of requests version.
requests.utils.to_native_string is available since requests 2.0.0
So just update requests:
pip install -U requests
See more details here on another thread
This sounds like an issue with your install. The method to_native_string should be defined in the requests\utils.py in your Python install.
I'm on Ubuntu, and installed the Twitter module, and can import it without any errors. When I look in my install, in /usr/lib/python2.7/dist-packages/requests/utils.py, there is a to_native_string method defined there.
The implication from the error you're getting is that in your installation, there is either no utils.py, or, if there is, it does not contain that method.
I would recommend checking your install to see if that is the case. If it is indeed missing, I would recommend axing your install and reinstalling. You might want to try a virtualenv environment instead, so it can act as a sandbox (in that case you can leave your current install as is, as long as it is intact enough to run virtualenv and pip).
If utils.py is actually there and does contain a method with that name, I would recommend running a debugger such as pudb or pdb (pudb isn't built in, but it's more full featured), and step through the import to see if that sheds any additional light.

Error during library import in Python (Windows)

I am trying to configure svn hook for email notification using mailer.py script from apache, but it always crash on import of svn libs. I try two ways of installing svn and python. I try to install everything manually using command line and use CollableNet installer that have preinstalled Python and all libs I need but result is the same.
Now I try to import one library from hole package that I need using python in command line and I have such response:
>>> import svn.core
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: No module named svn.core
I try to fix it using:
1) import sys; sys.path.append("C:\csvn\lib\svn-python\svn")
and
2) C:\csvn\lib\svn-python\svn>python "\__init__.py" install
But it didn't help.
For now I have no package with setup.py to install it.
I spend a lot of time on this task, and going crazy a little). Please give me any suggestion how to fix it.

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