SqlAlchemy table inheritance and primary keys - python

I have an inherited table in SqlAlchemy which complains about not having a primary key. Oddly, the parent table has a primary key. Here is the situation:
Parent(Base)
__tablename__= 'parents'
id = Column(INT, primary_key=True, autoincrement=True)
Child(Parent)
__tablename__= 'children'
birthday = Column(TIMESTAMP)
parentId = Column(INT, ForeignKey('parents.uid', onupdate="CASCADE", ondelete="CASCADE"))
parent = relationship("User", backref=backref('CommandsQueued'))
Note that the parent table has a primary key, and that the child table is inheriting that. Despite this setup, I'm getting the following error:
SAWarning: Could not assemble any primary keys for locally mapped table 'children' - no rows will be persisted in this Table.
self._configure_pks()
I don't understand why SA doesn't recognize that the table does have a primary key. Does anyone know what is going on here? Am I misunderstanding the inheritance behaviour of SA?

I guess it's just a minimal example, it doesn't make much sense for Child to be a subclass of Parent. I'd expect both to be subclasses of Person, or something like that. In that case, you might want to take a look at polymorphic identity too.
Anyway, SQLAlchemy inheritance doesn't work like that. In the way you declared, It expects that your Child class and table declares its own primary key because it's a separate table, but if you try to do that with the same attribute name, you'll get a conflict. Try declaring the base id column using sqlalchemy.orm.column_property and it should do what you expect.
So, do something like this on the Child:
id = sqlalchemy.orm.column_property(Column(INT, primary_key=True), Parent.id)
And it should work as you expect.

Related

Why I need both relationship and foreign key for Many to One relationship?

In the docs for SQLAlchemy for Many to One relationships it shows the following example:
class Parent(Base):
__tablename__ = 'parent'
id = Column(Integer, primary_key=True)
child_id = Column(Integer, ForeignKey('child.id'))
child = relationship("Child")
class Child(Base):
__tablename__ = 'child'
id = Column(Integer, primary_key=True)
Many parents for a single child. Then, when if we create a Parent, we need to populate child_id and child, which seems kind of redundant? Is this mandatory, or what's the purpose of each thing?
child = Child()
Parent(child_id=child, child=child)
Also, in Flask-SQLAlchemy, there is this example for a simple relationship in which it creates a post like this:
Post(title='Hello Python!', body='Python is pretty cool', category=py)
without providing a category_id. If I replicate that scenario, category_id value is None.
For the purpose of creating new objects like Parent(child=child), would it be enough to add foreign_keys=[child_id] or does it have further implications?
It is not mandatory; you do not need to populate both. Setting the foreign key to the related instance can be an error waiting to manifest itself. The only thing you need to do is
child = Child()
parent = Parent(child=child)
After this parent.child_id is None, but they represent the object part of ORM just fine. parent.child is a reference to the created child. They have not been persisted to the database and have no identity, other than their Python object ID. Only when you add them to a Session and flush the changes to the database do they receive an identity, due to them using generated surrogate keys. Here is where the mapping from the object world to the relational world happens. SQLAlchemy automatically fills in parent.child_id, so that their relationship is recorded in the database as well (note that this is not what "relational" in relational model means).
Returning to the example, adding some printing helps keep track of what happens and when:
child = Child()
parent = Parent(child=child)
print(parent.child_id) # None
session.add(parent)
session.flush() # Send changes held in session to DB
print(parent.child_id) # The ID assigned to child
You can also reverse the situation: you might have the ID of an existing Child, but not the actual object. In that case you can simply assign child_id yourself.
So, to answer the title: you do not need the ORM relationship in order to have a DB foreign key relationship, but you can use it to map the DB relationship to the object world.

slqlalchemy UniqueConstraint VS Index(unique=True)

I am using MySQL (running InnoDB), and wrapped the entire thing using sqlalchemy. Now, I would like to generate changes in my database by using (see docs)
sqlalchemy_utils.functions.create_database(...)
Generally the above function does what it is supposed to. The only exception being the generation of unique indexes.
Say, I define a table like this:
## ...
# DeclBase = declarative_base()
## ...
class MyTable(DeclBase):
__tablename__ = 'my_table'
id = Column(Integer, primary_key=True)
attr_1 = Column(String(32))
attr_2 = Column(Integer, nullable=False)
attr_3 = Column(DateTime)
attr_4 = Column(
Integer,
ForeignKey('other_table.id', onupdate='CASCADE', ondelete='CASCADE'),
nullable=False
)
u_idx = UniqueConstraint(attr_2, attr_3, 'my_table_uidx')
when I call create_database I will get sqlalchemy to create the table 'my_table' with all columns as specified. The foreign key is also setup fine, but no unique index can be found on the database side. I then tried using a Index(unique=True) instead. So instead of
u_idx = UniqueConstraint(attr_2, attr_3, 'my_table_uidx')
I put
u_idx_1 = Index('my_table_uidx', attr_2, attr_3, unique=True)
My impression was this logically produces a similar result. This time sqlalchemy indeed created the unique index on the db.
Maybe I am miserably misunderstanding something about the difference between UniqueConstraint and Index(unique=True), or the way sqlalchemy uses them to automate generation of databases.
Can anyone shed some light on this?
The main difference is that while the Index API allows defining an index outside of a table definition as long as it can reference the table through the passed SQL constructs, a UniqueConstraint and constraints in general must be defined inline in the table definition:
To apply table-level constraint objects such as ForeignKeyConstraint to a table defined using Declarative, use the __table_args__ attribute, described at Table Configuration.
The thing to understand is that during construction of a declarative class a new Table is constructed, if not passed an explicit __table__. In your example model class the UniqueConstraint instance is bound to a class attribute, but the declarative base does not include constraints in the created Table instance from attributes. You must pass it in the table arguments:
class MyTable(DeclBase):
__tablename__ = 'my_table'
...
# A positional argument tuple, passed to Table constructor
__table_args__ = (
UniqueConstraint(attr_2, attr_3, name='my_table_uidx'),
)
Note that you must pass the constraint name as a keyword argument. You could also pass the constraint using Table.append_constraint(), if called before any attempts to create the table:
class MyTable(DeclBase):
...
MyTable.__table__.append_constraint(
UniqueConstraint('attr_2', 'attr_3', name='my_table_uidx'))

SQLAlchemy one-to-many relationship (Single table with join table)

I have db that I cannot modify, it has two tables 'people' and 'relation'. The table 'people' has names, ids and the column parent (yes/no). The table 'relation' contains a foreign key 'people.id' for parent and a 'people.id' for its child. I want to join columns in the people table so I can
People.query.filter_by(id='id of the parent')
to get the name of the parent and it's childs. This is my code:
class People(db.model):
__tablename__ = 'people'
id = db.Column(db.integer(), primary_key=True
name = db.Column(db.String())
parent = db.Column(db.Integer()) ##0 for no 1 for yes
parent_id=db.relationship('Link',backref=db.backref('Link.parent_id')
class Link(db.Model):
_tablename__ = 'link'
parent_id=db.Column(db.Integer(),db.ForeignKey('people.id'),primary_key=True)
id = db.Column(db.Integer(), db.ForeignKey('people.id'), primary_key=True)
dateofbirth = db.Column(db.Integer())
SQLAlchemy tells me:
ArgumentError: relationship 'parent_id' expects a class or a mapper argument (received: <class 'sqlalchemy.sql.schema.Table'>)
Excuse me if I messed up, but it's my first question here (and also the first steps with SQLAlchemy)
Typically you would want to set up the foreign key and backref in the same table, like this:
class Link(db.Model):
_tablename__ = 'link'
parent_id = db.Column(db.Integer(),db.ForeignKey('people.id'),primary_key=True)
parent = db.relationship('People', backref='links')
Now you can access each Link entries parent via Link.parent, and you can get a list of each People entries links via People.links (assuming this is a one-to-many relationship).
Also, if People.parent is supposed to represent a boolean value then:
1.) you should follow the standard naming convention and call it something like is_parent
2.) you should declare People.parent as a db.Boolean type, not a db.Integer. In most (probably all) database implementations, using booleans instead of integers (when appropriate) is more memory efficient.
I hope this helped.

Database Relationship - Syntax

A question on the syntax involved in SQLAlchemy.
class Parent(Base):
__tablename__ = 'parent'
id = Column(Integer, primary_key=True)
child_id = Column(Integer, ForeignKey('child.id'))
child = relationship("Child")
class Child(Base):
__tablename__ = 'child'
id = Column(Integer, primary_key=True)
Why is it ForeignKey('child.id') and not ForeignKey("Child.id")?
Why is it relationship("Child") and not relationship("child")? Is there something fundamental about how databases and SQLAlchemy work that I don't understand which is why I have to ask this question? Thanks!
relationship(Child) is also valid. By capitalising inside string, sqlalchemy will look for respective model.
Relationship isn't sql standard so SQLAlchemy is using its own convention, whereas ForeignKey is SQL Standard so tablename.column is used.
In general: A relationship is defined on orm level while ForeignKey represents a database model. Now, it well might be the case that sqlalchemy is smart enough to figure from from the other, but if you keep this separation in mind, you are safe.
Specifically to your question: just read the documentation. Extract below (verbatim)
From relationship:
argument – a mapped class, or actual Mapper instance, representing the
target of the relationship.
argument may also be passed as a callable function which is evaluated
at mapper initialization time, and may be passed as a Python-evaluable
string when using Declarative.
From ForeignKey
column – A single target column for the key relationship. A Column
object or a column name as a string: tablename.columnkey or
schema.tablename.columnkey. columnkey is the key which has been
assigned to the column (defaults to the column name itself), unless
link_to_name is True in which case the rendered name of the column is
used.

SQLAlchemy: cascade delete

I must be missing something trivial with SQLAlchemy's cascade options because I cannot get a simple cascade delete to operate correctly -- if a parent element is a deleted, the children persist, with null foreign keys.
I've put a concise test case here:
from sqlalchemy import Column, Integer, ForeignKey
from sqlalchemy.orm import relationship
from sqlalchemy import create_engine
from sqlalchemy.orm import sessionmaker
from sqlalchemy.ext.declarative import declarative_base
Base = declarative_base()
class Parent(Base):
__tablename__ = "parent"
id = Column(Integer, primary_key = True)
class Child(Base):
__tablename__ = "child"
id = Column(Integer, primary_key = True)
parentid = Column(Integer, ForeignKey(Parent.id))
parent = relationship(Parent, cascade = "all,delete", backref = "children")
engine = create_engine("sqlite:///:memory:")
Base.metadata.create_all(engine)
Session = sessionmaker(bind=engine)
session = Session()
parent = Parent()
parent.children.append(Child())
parent.children.append(Child())
parent.children.append(Child())
session.add(parent)
session.commit()
print "Before delete, children = {0}".format(session.query(Child).count())
print "Before delete, parent = {0}".format(session.query(Parent).count())
session.delete(parent)
session.commit()
print "After delete, children = {0}".format(session.query(Child).count())
print "After delete parent = {0}".format(session.query(Parent).count())
session.close()
Output:
Before delete, children = 3
Before delete, parent = 1
After delete, children = 3
After delete parent = 0
There is a simple, one-to-many relationship between Parent and Child. The script creates a parent, adds 3 children, then commits. Next, it deletes the parent, but the children persist. Why? How do I make the children cascade delete?
The problem is that sqlalchemy considers Child as the parent, because that is where you defined your relationship (it doesn't care that you called it "Child" of course).
If you define the relationship on the Parent class instead, it will work:
children = relationship("Child", cascade="all,delete", backref="parent")
(note "Child" as a string: this is allowed when using the declarative style, so that you are able to refer to a class that is not yet defined)
You might want to add delete-orphan as well (delete causes children to be deleted when the parent gets deleted, delete-orphan also deletes any children that were "removed" from the parent, even if the parent is not deleted)
EDIT: just found out: if you really want to define the relationship on the Child class, you can do so, but you will have to define the cascade on the backref (by creating the backref explicitly), like this:
parent = relationship(Parent, backref=backref("children", cascade="all,delete"))
(implying from sqlalchemy.orm import backref)
#Steven's asnwer is good when you are deleting through session.delete() which never happens in my case. I noticed that most of the time I delete through session.query().filter().delete() (which doesn't put elements in the memory and deletes directly from db).
Using this method sqlalchemy's cascade='all, delete' doesn't work. There is a solution though: ON DELETE CASCADE through db (note: not all databases support it).
class Child(Base):
__tablename__ = "children"
id = Column(Integer, primary_key=True)
parent_id = Column(Integer, ForeignKey("parents.id", ondelete='CASCADE'))
class Parent(Base):
__tablename__ = "parents"
id = Column(Integer, primary_key=True)
child = relationship(Child, backref="parent", passive_deletes=True)
Pretty old post, but I just spent an hour or two on this, so I wanted to share my finding, especially since some of the other comments listed aren't quite right.
TL;DR
Give the child table a foreign or modify the existing one, adding ondelete='CASCADE':
parent_id = db.Column(db.Integer, db.ForeignKey('parent.id', ondelete='CASCADE'))
And one of the following relationships:
a) This on the parent table:
children = db.relationship('Child', backref='parent', passive_deletes=True)
b) Or this on the child table:
parent = db.relationship('Parent', backref=backref('children', passive_deletes=True))
Details
First off, despite what the accepted answer says, the parent/child relationship is not established by using relationship, it's established by using ForeignKey. You can put the relationship on either the parent or child tables and it will work fine. Although, apparently on the child tables, you have to use the backref function in addition to the keyword argument.
Option 1 (preferred)
Second, SqlAlchemy supports two different kinds of cascading. The first, and the one I recommend, is built into your database and usually takes the form of a constraint on the foreign key declaration. In PostgreSQL it looks like this:
CONSTRAINT child_parent_id_fkey FOREIGN KEY (parent_id)
REFERENCES parent_table(id) MATCH SIMPLE
ON DELETE CASCADE
This means that when you delete a record from parent_table, then all the corresponding rows in child_table will be deleted for you by the database. It's fast and reliable and probably your best bet. You set this up in SqlAlchemy through ForeignKey like this (part of the child table definition):
parent_id = db.Column(db.Integer, db.ForeignKey('parent.id', ondelete='CASCADE'))
parent = db.relationship('Parent', backref=backref('children', passive_deletes=True))
The ondelete='CASCADE' is the part that creates the ON DELETE CASCADE on the table.
Gotcha!
There's an important caveat here. Notice how I have a relationship specified with passive_deletes=True? If you don't have that, the entire thing will not work. This is because by default when you delete a parent record SqlAlchemy does something really weird. It sets the foreign keys of all child rows to NULL. So if you delete a row from parent_table where id = 5, then it will basically execute
UPDATE child_table SET parent_id = NULL WHERE parent_id = 5
Why you would want this I have no idea. I'd be surprised if many database engines even allowed you to set a valid foreign key to NULL, creating an orphan. Seems like a bad idea, but maybe there's a use case. Anyway, if you let SqlAlchemy do this, you will prevent the database from being able to clean up the children using the ON DELETE CASCADE that you set up. This is because it relies on those foreign keys to know which child rows to delete. Once SqlAlchemy has set them all to NULL, the database can't delete them. Setting the passive_deletes=True prevents SqlAlchemy from NULLing out the foreign keys.
You can read more about passive deletes in the SqlAlchemy docs.
Option 2
The other way you can do it is to let SqlAlchemy do it for you. This is set up using the cascade argument of the relationship. If you have the relationship defined on the parent table, it looks like this:
children = relationship('Child', cascade='all,delete', backref='parent')
If the relationship is on the child, you do it like this:
parent = relationship('Parent', backref=backref('children', cascade='all,delete'))
Again, this is the child so you have to call a method called backref and putting the cascade data in there.
With this in place, when you delete a parent row, SqlAlchemy will actually run delete statements for you to clean up the child rows. This will likely not be as efficient as letting this database handle if for you so I don't recommend it.
Here are the SqlAlchemy docs on the cascading features it supports.
Alex Okrushko answer almost worked best for me. Used ondelete='CASCADE' and passive_deletes=True combined. But I had to do something extra to make it work for sqlite.
Base = declarative_base()
ROOM_TABLE = "roomdata"
FURNITURE_TABLE = "furnituredata"
class DBFurniture(Base):
__tablename__ = FURNITURE_TABLE
id = Column(Integer, primary_key=True)
room_id = Column(Integer, ForeignKey('roomdata.id', ondelete='CASCADE'))
class DBRoom(Base):
__tablename__ = ROOM_TABLE
id = Column(Integer, primary_key=True)
furniture = relationship("DBFurniture", backref="room", passive_deletes=True)
Make sure to add this code to ensure it works for sqlite.
from sqlalchemy import event
from sqlalchemy.engine import Engine
from sqlite3 import Connection as SQLite3Connection
#event.listens_for(Engine, "connect")
def _set_sqlite_pragma(dbapi_connection, connection_record):
if isinstance(dbapi_connection, SQLite3Connection):
cursor = dbapi_connection.cursor()
cursor.execute("PRAGMA foreign_keys=ON;")
cursor.close()
Stolen from here: SQLAlchemy expression language and SQLite's on delete cascade
Steven is correct in that you need to explicitly create the backref, this results in the cascade being applied on the parent (as opposed to it being applied to the child like in the test scenario).
However, defining the relationship on the Child does NOT make sqlalchemy consider Child the parent. It doesn't matter where the relationship is defined (child or parent), its the foreign key that links the two tables that determines which is the parent and which is the child.
It makes sense to stick to one convention though, and based on Steven's response, I'm defining all my child relationships on the parent.
Steven's answer is solid. I'd like to point out an additional implication.
By using relationship, you're making the app layer (Flask) responsible for referential integrity. That means other processes that access the database not through Flask, like a database utility or a person connecting to the database directly, will not experience those constraints and could change your data in a way that breaks the logical data model you worked so hard to design.
Whenever possible, use the ForeignKey approach described by d512 and Alex. The DB engine is very good at truly enforcing constraints (in an unavoidable way), so this is by far the best strategy for maintaining data integrity. The only time you need to rely on an app to handle data integrity is when the database can't handle them, e.g. versions of SQLite that don't support foreign keys.
If you need to create further linkage among entities to enable app behaviors like navigating parent-child object relationships, use backref in conjunction with ForeignKey.
I struggled with the documentation as well, but found that the docstrings themselves tend to be easier than the manual. For example, if you import relationship from sqlalchemy.orm and do help(relationship), it will give you all the options you can specify for cascade. The bullet for delete-orphan says:
if an item of the child's type with no parent is detected, mark it for deletion.
Note that this option prevents a pending item of the child's class from being
persisted without a parent present.
I realize your issue was more with the way the documentation for defining parent-child relationships. But it seemed that you might also be having a problem with the cascade options, because "all" includes "delete". "delete-orphan" is the only option that's not included in "all".
Even tho this question is very old, it comes up first when searched for in Google so I'll post my solution to add up to what others said (I've spent few hours even after reading all the answers in here).
As d512 explained, it is all about Foreign Keys. It was quite a surprise to me but not all databases / engines support Foreign Keys. I'm running a MySQL database. After long investigation, I noticed that when I create new table it defaults to an engine (MyISAM) that doesn't support Foreign Keys. All I had to do was to set it to InnoDB by adding mysql_engine='InnoDB' when defining a Table. In my project I'm using an imperative mapping and it looks like so:
db.Table('child',
Column('id', Integer, primary_key=True),
# other columns
Column('parent_id',
ForeignKey('parent.id', ondelete="CASCADE")),
mysql_engine='InnoDB')
Answer by Stevan is perfect. But if you are still getting the error. Other possible try on top of that would be -
http://vincentaudebert.github.io/python/sql/2015/10/09/cascade-delete-sqlalchemy/
Copied from the link-
Quick tip if you get in trouble with a foreign key dependency even if you have specified a cascade delete in your models.
Using SQLAlchemy, to specify a cascade delete you should have cascade='all, delete' on your parent table. Ok but then when you execute something like:
session.query(models.yourmodule.YourParentTable).filter(conditions).delete()
It actually triggers an error about a foreign key used in your children tables.
The solution I used it to query the object and then delete it:
session = models.DBSession()
your_db_object = session.query(models.yourmodule.YourParentTable).filter(conditions).first()
if your_db_object is not None:
session.delete(your_db_object)
This should delete your parent record AND all the children associated with it.
TLDR: If the above solutions don't work, try adding nullable=False to your column.
I'd like to add a small point here for some people who may not get the cascade function to work with the existing solutions (which are great). The main difference between my work and the example was that I used automap. I do not know exactly how that might interfere with the setup of cascades, but I want to note that I used it. I am also working with a SQLite database.
I tried every solution described here, but rows in my child table continued to have their foreign key set to null when the parent row was deleted. I'd tried all the solutions here to no avail. However, the cascade worked once I set the child column with the foreign key to nullable = False.
On the child table, I added:
Column('parent_id', Integer(), ForeignKey('parent.id', ondelete="CASCADE"), nullable=False)
Child.parent = relationship("parent", backref=backref("children", passive_deletes=True)
With this setup, the cascade functioned as expected.

Categories

Resources