I am trying to recreate the following:
Any comments will be appreciated. I want to imitate this picture actually, but I have 3 problems:
How to get known the joints of two lines and the turning points of a line? Could these specific points be calculated from analytical calculations? or matplotlib could find out them?
How can I draw the dashed vertical line segment just below the line joint?
How to paste text to the segments of the lines? Could matplotlib determine the convenient location to write text attached to the lines ? or I should determine the location myself ?
For example, I can only draw such kind as below, far less than required. Please help me to improve my picture.
My own picture, which need improvements:
Code so far with detail code as below:
# -*- coding: utf-8 -*
import numpy as np
import matplotlib.pyplot as plt
import matplotlib as mpl
import math
from pylab import *
c = 2.998*10**10
hp = 6.626*10**-27
hb = 1.055*10**-27
kb = 1.381*10**-16
g = 6.673*10**-8
me = 9.109*10**-28
mp = 1.673*10**-24
q = 4.803*10**-10
sigT = 6.652*10**-25
p = 2.5
E52 = 1000
epsB_r = 0.01
epse_r = 0.1
D28 = 1
n1 = 1.0
nu15 = 2*10**(-3)
r014 = 1
g42 = 5
delt12 =1
g4 = g42*10**2
E0 = E52*10**52
eta = g4
N0 = E0/(g4*mp*c**2)
p_td = 24*3600
p_txd = 3**(1./3)*2**(-4./3)*10**(52./3)*pi**(-1./3)*mp**(-1./3)*c**(-5./3)/p_td
txd = p_txd*n1**(-1./3)*eta**(-8./3)*E52**(1./3)
p_Fmax_r1 = 2**(1./2)*3**(-1)*pi**(-1./2)*me*mp**(1./2)*c**3*sigT*q**(-1)*p_txd**(-3./2)*10**(-56)
Fmax_r1 = lambda t : p_Fmax_r1*N0*eta**6*E52**(-1./2)*n1*epsB_r**(1./2)*D28**(-2)*t**(3./2)
p_Fmax_r2 = 2**(1./2)*3**(-1)*pi**(-1./2)*me*mp**(1./2)*c**3*sigT*q**(-1)*p_txd**(34./35)*10**(-56)
Fmax_r2 = lambda t : p_Fmax_r2*N0*epsB_r**(1./2)*D28**(-2)*t**(-34./35)*eta**(-62./105)*n1**(37./210)*E52**(34./105)
p_nuc_r1 = 2**(-13./2)*3**2*me*mp**(-3./2)*c**(-2)*sigT**(-2)*pi**(-1./2)*q*p_td**(-2)
p_nuc_r2 = 2**(-13./2)*3**2*pi**(-1./2)*me*mp**(-3./2)*c**(-2)*sigT**(-2)*q*p_txd**(-74./35)*p_td**(-2)
nuc_r1 = lambda t : p_nuc_r1*eta**(-4)*epsB_r**(-3./2)*n1**(-3./2)*t**(-2)
nuc_r2 = lambda t : p_nuc_r2*eta**(172./105)*t**(4./35)*n1**(-167./210)*epsB_r**(-3./2)*E52**(-74./105)
p_num_r1 = 2**(11./2)*7**(-2)*mp**(5./2)*me**(-3)*pi**(-1./2)*q*p_txd**(-6)
p_num_r2 = 2**(11./2)*7**(-2)*mp**(5./2)*me**(-3)*pi**(-1./2)*q*p_txd**(54./35)
num_r1 = lambda t : p_num_r1*eta**18*((p-2)/(p-1))**2*epse_r**2*epsB_r**(1./2)*n1**(5./2)*t**6*E52**(-2)
num_r2 = lambda t : p_num_r2*((p-2)/(p-1))**2*n1**(-1./70)*eta**(-74./35)*E52**(18./35)*t**(-54./35)*epse_r**2*epsB_r**(1./2)
def num_r_(t):
return num_r1(t) if t<txd else num_r2(t)
num_r = np.vectorize(num_r_)
def nuc_r_(t):
return nuc_r1(t) if t<txd else nuc_r2(t)
nuc_r = np.vectorize(nuc_r_)
def Fmax_r_(t):
return Fmax_r1(t) if t<txd else Fmax_r2(t)
Fmax_r = np.vectorize(Fmax_r_)
i= np.arange(-5,-2,0.05)
t = 10**i
dnum = [math.log10(mmm) for mmm in num_r(t)]
dnuc = [math.log10(j) for j in nuc_r(t)]
nu_obs = [math.log(nu15*10**15,10) for a in i]
plt.figure('God Bless: Observable Limit')
plt.title(r'$\nu_{obs}$ and $\nu_c$ and $\nu_m$''\nComparation')
plt.xlabel('Time: log t')
plt.ylabel(r'log $\nu$')
plt.axvline(math.log10(txd))
plt.plot(i,nu_obs,'--',linewidth=2,label=r'$\nu_{obs}$')
plt.plot(i,dnum,'-.',linewidth=2,label=r'$\nu_m$')
plt.plot(i,dnuc,linewidth=2,label=r'$\nu_c$')
plt.savefig("test4.eps", dpi=120,bbox_inches='tight')
plt.legend()
plt.show()
I just find a solution, not certain whether there would be some better solution.
I took reference here: Annotate some points
I assumed the solution like this :
1, We can calculate the joint point coordination of lines.
2, If we want to plot a segment of a vertical line, i.e. the segment below the joint point, we can choose two points to draw a short line. That does work!
3, Maybe we can only to find a location of the illustrative text, and attach the text to that place.
I add such phrases :
plot([math.log10(txd),math.log10(txd)],[4,math.log10(nuc_r(txd))], color ='blue', linewidth=2.5, linestyle="--")
scatter([math.log10(txd),],[math.log10(nuc_r(txd))], 50, color ='blue')
annotate(r'$sin(\frac{2\pi}{3})=\frac{\sqrt{3}}{2}$',
xy=(math.log10(txd), math.log10(nuc_r(txd))), xycoords='data',
xytext=(+10, +30), textcoords='offset points', fontsize=16,
arrowprops=dict(arrowstyle="->", connectionstyle="arc3,rad=.2"))
And got the result as :
A Better One
Related
I would be so thankful if someone would be able to help me with this. I am creating a graph in matplotib however I would to love to split up the 14 lines created from the while loop into the x and y values of P, so instead of plt.plot(t,P) it would be plt.plot(t,((P[1])[0]))) and
plt.plot(t,((P[1])[1]))). I would love if someone could help me very quick, it should be easy but i am just getting errors with the arrays
`
#Altering Alpha in Tumor Cells vs PACCs
#What is alpha? α = Rate of conversion of cancer cells to PACCs
import numpy as np
from scipy.integrate import odeint
import matplotlib.pyplot as plt
from google.colab import files
value = -6
counter = -1
array = []
pac = []
while value <= 0:
def modelP(x,t):
P, C = x
λc = 0.0601
K = 2000
α = 1 * (10**value)
ν = 1 * (10**-6)
λp = 0.1
γ = 2
#returning odes
dPdt = ((λp))*P*(1-(C+(γ*P))/K)+ (α*C)
dCdt = ((λc)*C)*(1-(C+(γ*P))/K)-(α*C) + (ν***P)
return dPdt, dCdt
#initial
C0= 256
P0 = 0
Pinit = [P0,C0]
#time points
t = np.linspace(0,730)
#solve odes
P = odeint(modelP,Pinit,t)
plt.plot(t,P)
value += 1
#plot results
plt.xlabel('Time [days]')
plt.ylabel('Number of PACCs')
plt.show()
`
You can use subplots() to create two subplots and then plot the individual line into the plot you need. To do this, firstly add the subplots at the start (before the while loop) by adding this line...
fig, ax = plt.subplots(2,1) ## Plot will 2 rows, 1 column... change if required
Then... within the while loop, replace the plotting line...
plt.plot(t,P)
with (do take care of the space so that the lines are within while loop)
if value < -3: ## I am using value = -3 as the point of split, change as needed
ax[0].plot(t,P)#, ax=ax[0]) ## Add to first plot
else:
ax[1].plot(t,P)#,ax=ax[1]) ## Add to second plot
This will give a plot like this.
I am really confused by the function pywt.cwt, as I've not been able to get it to work. The function seems to integrate instead of differentiating. I would like to work it as the following: Example CWT, but my graph looks like this: My CWT. The idea is to integrate the raw signal (av) with cumtrapz, then differentiate with a gaussian CWT (=> S1), and then once more differentiate with gaussian CWT (=> S2).
As you can see in the pictures, the bottom peaks of the red line should line up in the valleys, but the land under the top peaks for me, and the green line should move 1/4th period to the left but moves to the right... Which makes me think it integrates for some reason.
I currently have no idea what causes this... Does anyone happen to know what is going on?
Thanks in advance!
#Get data from pandas
av = dfRange['y']
#remove gravity & turns av right way up
av = av - dfRange['y'].mean()
av = av * -1
#Filter
[b,a] = signal.butter(4, [0.9/(55.2/2), 20/(55.2/2)], 'bandpass')
av = signal.filtfilt(b,a, av)
#Integrate and differentiate av => S1
integrated_av = integrate.cumtrapz(av)
[CWT_av1, frequency1] = pywt.cwt(integrated_av, 8.8 , 'gaus1', 1/55.2)
CWT_av1 = CWT_av1[0]
CWT_av1 = CWT_av1 * 0.05
#differentiate S1 => S2
[CWT_av2, frequency2] = pywt.cwt(CWT_av1, 8.8 , 'gaus1', 1/55.2)
CWT_av2 = CWT_av2[0]
CWT_av2 = CWT_av2 * 0.8
#Find Peaks
inv_CWT_av1 = CWT_av1 * -1
av1_min, _ = signal.find_peaks(inv_CWT_av1)
av2_max, _ = signal.find_peaks(CWT_av2)
#Plot
plt.style.use('seaborn')
plt.figure(figsize=(25, 7), dpi = 300)
plt.plot_date(dfRange['recorded_naive'], av, linestyle = 'solid', marker = None, color = 'steelblue')
plt.plot_date(dfRange['recorded_naive'][:-1], CWT_av1[:], linestyle = 'solid', marker = None, color = 'red')
plt.plot(dfRange['recorded_naive'].iloc[av1_min], CWT_av1[av1_min], "ob", color = 'red')
plt.plot_date(dfRange['recorded_naive'][:-1], CWT_av2[:], linestyle = 'solid', marker = None, color = 'green')
plt.plot(dfRange['recorded_naive'].iloc[av2_max], CWT_av2[av2_max], "ob", color = 'green')
plt.gcf().autofmt_xdate()
plt.show()
I'm not sure this is your answer, but an observation from playing with pywt...
From the documentation the wavelets are basically given by the differentials of a Gaussian but there is an order dependent normalisation constant.
Plotting the differentials of a Guassian against the wavelets (extracted by putting in an impulse response) gives the following:
The interesting observation is that the order dependent normalisation constant sometimes seems to include a '-1'. In particular, it does for the first order gaus1.
So, my question is, could you actually have differentiation as you expect, but also multiplication by -1?
Code for the graph:
import numpy as np
import matplotlib.pyplot as plt
import pywt
dt = 0.01
t = dt * np.arange(100)
# Calculate the differentials of a gaussian by quadrature:
# start with the gaussian y = exp(-(x - x_0) ^ 2 / dt)
ctr = t[len(t) // 2]
gaus = np.exp(-np.power(t - ctr, 2)/dt)
gaus_quad = [np.gradient(gaus, dt)]
for i in range(7):
gaus_quad.append(np.gradient(gaus_quad[-1], dt))
# Extract the wavelets using the impulse half way through the dataset
y = np.zeros(len(t))
y[len(t) // 2] = 1
gaus_cwt = list()
for i in range(1, 9):
cwt, cwt_f = pywt.cwt(y, 10, f'gaus{i}', dt)
gaus_cwt.append(cwt[0])
fig, axs = plt.subplots(4, 2)
for i, ax in enumerate(axs.flatten()):
ax.plot(t, gaus_cwt[i] / np.max(np.abs(gaus_cwt[i])))
ax.plot(t, gaus_quad[i] / np.max(np.abs(gaus_quad[i])))
ax.set_title(f'gaus {i+1}', x=0.2, y=1.0, pad=-14)
ax.axhline(0, c='k')
ax.set_xticks([])
ax.set_yticks([])
EDIT: I figured out that the Problem always occours if one tries to plot to two different lists of figures. Does that mean that one can not do plots to different figure-lists in the same loop? See latest code for much simpler sample of a problem.
I try to analyze a complex set of data which consists basically about measurements of electric devices under different conditions. Hence, the code is a bit more complex but I tried to strip it down to a working example - however it is still pretty long. Hence, let me explain what you see: You see 3 classes with Transistor representing an electronic device. It's attribute Y represents the measurement data - consisting of 2 sets of measurements. Each Transistor belongs to a group - 2 in this example. And some groups belong to the same series - one series where both groups are included in this example.
The aim is now to plot all measurement data for each Transistor (not shown), then to also plot all data belonging to the same group in one plot each and all data of the same series to one plot. In order to program it in an efficent way without having a lot of loops my idea was to use the object orientated nature of matplotlib - I will have figures and subplots for each level of plotting (initialized in initGrpPlt and initSeriesPlt) which are then filled with only one loop over all Transistors (in MainPlt: toGPlt and toSPlt). In the end it should only be printed / saved to a file / whatever (PltGrp and PltSeries).
The Problem: Even though I specify where to plot, python plots the series plots into the group plots. You can check this yourself by running the code with the line 'toSPlt(trans,j)' and without. I have no clue why python does this because in the function toSPlt I explicetly say that python should use the subplots from the series-subplot-list. Would anyone have an idea to why this is like this and how to solve this problem in an elegent way?
Read the code from the bottom to the top, that should help with understanding.
Kind regards
# -*- coding: utf-8 -*-
import matplotlib.pyplot as plt
import matplotlib.cm as cm
import numpy as np
maxNrVdrain = 2
X = np.linspace(-np.pi, np.pi, 256,endpoint=True)
A = [[1*np.cos(X),2*np.cos(X),3*np.cos(X),4*np.cos(X)],[1*np.tan(X),2*np.tan(X),3*np.tan(X),4*np.tan(X)]]
B = [[2* np.sin(X),4* np.sin(X),6* np.sin(X),8* np.sin(X)],[2*np.cos(X),4*np.cos(X),6*np.cos(X),8*np.cos(X)]]
class Transistor(object):
_TransRegistry = []
def __init__(self,y1,y2):
self._TransRegistry.append(self)
self.X = X
self.Y = [y1,y2]
self.group = ''
class Groups():
_GroupRegistry = []
def __init__(self,trans):
self._GroupRegistry.append(self)
self.transistors = [trans]
self.figlist = []
self.axlist = []
class Series():
_SeriesRegistry = []
def __init__(self,group):
self._SeriesRegistry.append(self)
self.groups = [group]
self.figlist = []
self.axlist = []
def initGrpPlt():
for group in Groups._GroupRegistry:
for j in range(maxNrVdrain):
group.figlist.append(plt.figure(j))
group.axlist.append(group.figlist[j].add_subplot(111))
return
def initSeriesPlt():
for series in Series._SeriesRegistry:
for j in range(maxNrVdrain):
series.figlist.append(plt.figure(j))
series.axlist.append(series.figlist[j].add_subplot(111))
return
def toGPlt(trans,j):
colour = cm.rainbow(np.linspace(0, 1, 4))
group = trans.group
group.axlist[j].plot(trans.X,trans.Y[j], color=colour[group.transistors.index(trans)], linewidth=1.5, linestyle="-")
return
def toSPlt(trans,j):
colour = cm.rainbow(np.linspace(0, 1, 2))
series = Series._SeriesRegistry[0]
group = trans.group
if group.transistors.index(trans) == 0:
series.axlist[j].plot(trans.X,trans.Y[j],color=colour[series.groups.index(group)], linewidth=1.5, linestyle="-", label = 'T = nan, RH = nan' )
else:
series.axlist[j].plot(trans.X,trans.Y[j],color=colour[series.groups.index(group)], linewidth=1.5, linestyle="-")
return
def PltGrp(group,j):
ax = group.axlist[j]
ax.set_title('Test Grp')
return
def PltSeries(series,j):
ax = series.axlist[j]
ax.legend(loc='upper right', frameon=False)
ax.set_title('Test Series')
return
def MainPlt():
initGrpPlt()
initSeriesPlt()
for trans in Transistor._TransRegistry:
for j in range(maxNrVdrain):
toGPlt(trans,j)
toSPlt(trans,j)#plots to group plot for some reason
for j in range(maxNrVdrain):
for group in Groups._GroupRegistry:
PltGrp(group,j)
plt.show()
return
def Init():
for j in range(4):
trans = Transistor(A[0][j],A[1][j])
if j == 0:
Groups(trans)
else:
Groups._GroupRegistry[0].transistors.append(trans)
trans.group = Groups._GroupRegistry[0]
Series(Groups._GroupRegistry[0])
for j in range(4):
trans = Transistor(B[0][j],B[1][j])
if j == 0:
Groups(trans)
else:
Groups._GroupRegistry[1].transistors.append(trans)
trans.group = Groups._GroupRegistry[1]
Series._SeriesRegistry[0].groups.append(Groups._GroupRegistry[1])
return
def main():
Init()
MainPlt()
return
main()
latest example that does not work:
import matplotlib.pyplot as plt
import matplotlib.cm as cm
import numpy as np
X = np.linspace(-np.pi, np.pi, 256,endpoint=True)
Y1 = np.cos(X)
Y2 = np.sin(X)
figlist1 = []
figlist2 = []
axlist1 = []
axlist2 = []
for j in range(4):
figlist1.append(plt.figure(j))
axlist1.append(figlist1[j].add_subplot(111))
figlist2.append(plt.figure(j))#this should be a new set of figures!
axlist2.append(figlist2[j].add_subplot(111))
colour = cm.rainbow(np.linspace(0, 1, 4))
axlist1[j].plot(X,j*Y1, color=colour[j], linewidth=1.5, linestyle="-")
axlist1[j].set_title('Test Grp 1')
colour = cm.rainbow(np.linspace(0, 1, 4))
axlist2[j].plot(X,j*Y2, color=colour[int(j/2)], linewidth=1.5, linestyle="-")
axlist2[j].set_title('Test Grp 2')
plt.show()
Ok, stupid mistake if one thinks of the Background but maybe someone has a similar Problem and is unable to see the cause as I was first. So here is the solution:
The Problem is that the Name of the listobjects like figlist1[j] do not define the figure - they are just pointers to the actual figure object. and if such an object is created by plt.figure(j) one has to make sure that j is different for each figure - hence, in a Loop where multiple figures shall be initialized one Needs to somehow Change the number of the figure or the first object will be overwritten. Hope that helps! Cheers.
I want to fill a bunch of polygons with line hatch. The lines must have a specific angle with respect to x-axis. I found that matplotlib already suppots some hatch classes and one can define a custom class (like How to fill a polygon with a custom hatch in matplotlib?). I tried to generate a custom hatch but when I append it to the list of hatches the init function doesn't know the angle. I tried with the following class:
class AngularHatch(HatchPatternBase):
def __init__(self, hatch, density, angle):
self.num_lines = int((hatch.count('{'))*density*3)
self.num_vertices = self.num_lines * 2
self.R = np.array([[np.cos(angle), -np.sin(angle)],
[np.sin(angle), np.cos(angle)]])
def set_vertices_and_codes(self, vertices, codes):
steps, stepsize = np.linspace(0.0, 1.0, self.num_lines, False,
retstep=True)
steps += stepsize / 2.
vertices[0::2, 0] = 0
vertices[0::2, 1] = steps
vertices[1::2, 0] = 1
vertices[1::2, 1] = steps
for i, v in enumerate(vertices):
vertices[i] = self.R.dot(v)
codes[0::2] = Path.MOVETO
codes[1::2] = Path.LINETO
Then I add this class to the list of available classes for hatching. However this will not generate the correct lines since the code is modified from the HorizontalHatch source code here and I think this generates lines in the unit square. Moreover I need to generate this patch for a specific angle for each polygon I want to render. ¿Any ideas on how to give the correct angle to this class per polygon?
The following does not solve this issue. It just solves part of the problem and shows at which point the approach fails. I am currently convinced that hatching with arbitrary angles is not possible with matplotlib, because the size of the unit cell is fixed.
To overcome the problem of setting the angle, one may define a custom format from which to take the angle information. E.g. "{angle}{factor}", such that "{45}{2}" would produce a hatching with an angle of 45° and a density factor of 2.
I then do not completely understand the attempt of calculating the vertices. To replicate the behaviour of the hatches which are built-in, one may rotate them directly.
The problem is that this way the line hatches work only for angles of 45°. This is because the lines at the edges of the unit cell do not align well. See the following:
import numpy as np
import matplotlib.hatch
import matplotlib.path
import matplotlib.pyplot as plt
from matplotlib.patches import Ellipse, Rectangle
class AngularHatch(matplotlib.hatch.HatchPatternBase):
def __init__(self, hatch, density):
self.num_lines=0
self.num_vertices=0
if hatch[0] == "{":
h = hatch.strip("{}").split("}{")
angle = np.deg2rad(float(h[0])-45)
d = float(h[1])
self.num_lines = int(density*d)
self.num_vertices = (self.num_lines + 1) * 2
self.R = np.array([[np.cos(angle), -np.sin(angle)],
[np.sin(angle), np.cos(angle)]])
def set_vertices_and_codes(self, vertices, codes):
steps = np.linspace(-0.5, 0.5, self.num_lines + 1, True)
vertices[0::2, 0] = 0.0 + steps
vertices[0::2, 1] = 0.0 - steps
vertices[1::2, 0] = 1.0 + steps
vertices[1::2, 1] = 1.0 - steps
codes[0::2] = matplotlib.path.Path.MOVETO
codes[1::2] = matplotlib.path.Path.LINETO
vertices[:,:] = np.dot((vertices-0.5),self.R)+0.5
matplotlib.hatch._hatch_types.append(AngularHatch)
fig = plt.figure()
ax = fig.add_subplot(111)
ellipse = ax.add_patch(Rectangle((0.1, 0.1), 0.4, 0.8, fill=False))
ellipse.set_hatch('{45}{1}')
ellipse.set_color('red')
ellipse = ax.add_patch(Rectangle((0.55, 0.1), 0.4, 0.8, fill=False))
ellipse.set_hatch('{22}{1}')
ellipse.set_color('blue')
plt.show()
I would like to plot parallel lines with different colors. E.g. rather than a single red line of thickness 6, I would like to have two parallel lines of thickness 3, with one red and one blue.
Any thoughts would be appreciated.
Merci
Even with the smart offsetting (s. below), there is still an issue in a view that has sharp angles between consecutive points.
Zoomed view of smart offsetting:
Overlaying lines of varying thickness:
Plotting parallel lines is not an easy task. Using a simple uniform offset will of course not show the desired result. This is shown in the left picture below.
Such a simple offset can be produced in matplotlib as shown in the transformation tutorial.
Method1
A better solution may be to use the idea sketched on the right side. To calculate the offset of the nth point we can use the normal vector to the line between the n-1st and the n+1st point and use the same distance along this normal vector to calculate the offset point.
The advantage of this method is that we have the same number of points in the original line as in the offset line. The disadvantage is that it is not completely accurate, as can be see in the picture.
This method is implemented in the function offset in the code below.
In order to make this useful for a matplotlib plot, we need to consider that the linewidth should be independent of the data units. Linewidth is usually given in units of points, and the offset would best be given in the same unit, such that e.g. the requirement from the question ("two parallel lines of width 3") can be met.
The idea is therefore to transform the coordinates from data to display coordinates, using ax.transData.transform. Also the offset in points o can be transformed to the same units: Using the dpi and the standard of ppi=72, the offset in display coordinates is o*dpi/ppi. After the offset in display coordinates has been applied, the inverse transform (ax.transData.inverted().transform) allows a backtransformation.
Now there is another dimension of the problem: How to assure that the offset remains the same independent of the zoom and size of the figure?
This last point can be addressed by recalculating the offset each time a zooming of resizing event has taken place.
Here is how a rainbow curve would look like produced by this method.
And here is the code to produce the image.
import numpy as np
import matplotlib.pyplot as plt
dpi = 100
def offset(x,y, o):
""" Offset coordinates given by array x,y by o """
X = np.c_[x,y].T
m = np.array([[0,-1],[1,0]])
R = np.zeros_like(X)
S = X[:,2:]-X[:,:-2]
R[:,1:-1] = np.dot(m, S)
R[:,0] = np.dot(m, X[:,1]-X[:,0])
R[:,-1] = np.dot(m, X[:,-1]-X[:,-2])
On = R/np.sqrt(R[0,:]**2+R[1,:]**2)*o
Out = On+X
return Out[0,:], Out[1,:]
def offset_curve(ax, x,y, o):
""" Offset array x,y in data coordinates
by o in points """
trans = ax.transData.transform
inv = ax.transData.inverted().transform
X = np.c_[x,y]
Xt = trans(X)
xto, yto = offset(Xt[:,0],Xt[:,1],o*dpi/72. )
Xto = np.c_[xto, yto]
Xo = inv(Xto)
return Xo[:,0], Xo[:,1]
# some single points
y = np.array([1,2,2,3,3,0])
x = np.arange(len(y))
#or try a sinus
x = np.linspace(0,9)
y=np.sin(x)*x/3.
fig, ax=plt.subplots(figsize=(4,2.5), dpi=dpi)
cols = ["#fff40b", "#00e103", "#ff9921", "#3a00ef", "#ff2121", "#af00e7"]
lw = 2.
lines = []
for i in range(len(cols)):
l, = plt.plot(x,y, lw=lw, color=cols[i])
lines.append(l)
def plot_rainbow(event=None):
xr = range(6); yr = range(6);
xr[0],yr[0] = offset_curve(ax, x,y, lw/2.)
xr[1],yr[1] = offset_curve(ax, x,y, -lw/2.)
xr[2],yr[2] = offset_curve(ax, xr[0],yr[0], lw)
xr[3],yr[3] = offset_curve(ax, xr[1],yr[1], -lw)
xr[4],yr[4] = offset_curve(ax, xr[2],yr[2], lw)
xr[5],yr[5] = offset_curve(ax, xr[3],yr[3], -lw)
for i in range(6):
lines[i].set_data(xr[i], yr[i])
plot_rainbow()
fig.canvas.mpl_connect("resize_event", plot_rainbow)
fig.canvas.mpl_connect("button_release_event", plot_rainbow)
plt.savefig(__file__+".png", dpi=dpi)
plt.show()
Method2
To avoid overlapping lines, one has to use a more complicated solution.
One could first offset every point normal to the two line segments it is part of (green points in the picture below). Then calculate the line through those offset points and find their intersection.
A particular case would be when the slopes of two subsequent line segments equal. This has to be taken care of (eps in the code below).
from __future__ import division
import numpy as np
import matplotlib.pyplot as plt
dpi = 100
def intersect(p1, p2, q1, q2, eps=1.e-10):
""" given two lines, first through points pn, second through qn,
find the intersection """
x1 = p1[0]; y1 = p1[1]; x2 = p2[0]; y2 = p2[1]
x3 = q1[0]; y3 = q1[1]; x4 = q2[0]; y4 = q2[1]
nomX = ((x1*y2-y1*x2)*(x3-x4)- (x1-x2)*(x3*y4-y3*x4))
denom = float( (x1-x2)*(y3-y4) - (y1-y2)*(x3-x4) )
nomY = (x1*y2-y1*x2)*(y3-y4) - (y1-y2)*(x3*y4-y3*x4)
if np.abs(denom) < eps:
#print "intersection undefined", p1
return np.array( p1 )
else:
return np.array( [ nomX/denom , nomY/denom ])
def offset(x,y, o, eps=1.e-10):
""" Offset coordinates given by array x,y by o """
X = np.c_[x,y].T
m = np.array([[0,-1],[1,0]])
S = X[:,1:]-X[:,:-1]
R = np.dot(m, S)
norm = np.sqrt(R[0,:]**2+R[1,:]**2) / o
On = R/norm
Outa = On+X[:,1:]
Outb = On+X[:,:-1]
G = np.zeros_like(X)
for i in xrange(0, len(X[0,:])-2):
p = intersect(Outa[:,i], Outb[:,i], Outa[:,i+1], Outb[:,i+1], eps=eps)
G[:,i+1] = p
G[:,0] = Outb[:,0]
G[:,-1] = Outa[:,-1]
return G[0,:], G[1,:]
def offset_curve(ax, x,y, o, eps=1.e-10):
""" Offset array x,y in data coordinates
by o in points """
trans = ax.transData.transform
inv = ax.transData.inverted().transform
X = np.c_[x,y]
Xt = trans(X)
xto, yto = offset(Xt[:,0],Xt[:,1],o*dpi/72., eps=eps )
Xto = np.c_[xto, yto]
Xo = inv(Xto)
return Xo[:,0], Xo[:,1]
# some single points
y = np.array([1,1,2,0,3,2,1.,4,3]) *1.e9
x = np.arange(len(y))
x[3]=x[4]
#or try a sinus
#x = np.linspace(0,9)
#y=np.sin(x)*x/3.
fig, ax=plt.subplots(figsize=(4,2.5), dpi=dpi)
cols = ["r", "b"]
lw = 11.
lines = []
for i in range(len(cols)):
l, = plt.plot(x,y, lw=lw, color=cols[i], solid_joinstyle="miter")
lines.append(l)
def plot_rainbow(event=None):
xr = range(2); yr = range(2);
xr[0],yr[0] = offset_curve(ax, x,y, lw/2.)
xr[1],yr[1] = offset_curve(ax, x,y, -lw/2.)
for i in range(2):
lines[i].set_data(xr[i], yr[i])
plot_rainbow()
fig.canvas.mpl_connect("resize_event", plot_rainbow)
fig.canvas.mpl_connect("button_release_event", plot_rainbow)
plt.show()
Note that this method should work well as long as the offset between the lines is smaller then the distance between subsequent points on the line. Otherwise method 1 may be better suited.
The best that I can think of is to take your data, generate a series of small offsets, and use fill_between to make bands of whatever color you like.
I wrote a function to do this. I don't know what shape you're trying to plot, so this may or may not work for you. I tested it on a parabola and got decent results. You can also play around with the list of colors.
def rainbow_plot(x, y, spacing=0.1):
fig, ax = plt.subplots()
colors = ['red', 'yellow', 'green', 'cyan','blue']
top = max(y)
lines = []
for i in range(len(colors)+1):
newline_data = y - top*spacing*i
lines.append(newline_data)
for i, c in enumerate(colors):
ax.fill_between(x, lines[i], lines[i+1], facecolor=c)
return fig, ax
x = np.linspace(0,1,51)
y = 1-(x-0.5)**2
rainbow_plot(x,y)