Finding coordinate points of intersection with two numpy arrays - python

This sort of question is a tad bit different the normal 'how to find the intersection of two lines' via numpy. Here is the situation, I am creating a program that looks at slope stability and I need to find where a circle intersects a line.
I have two numpy arrays:
One array gives me a normal (x, y) values of an elevation profile in 2D
The other array is calculated values of coordinates (x, y) that spans the circumference of a circle from a defined centre.
I need to somehow compare the two at what approximate point does the coordinates of the circle intersect the profile line?
Here some data to work with:
circ_coords = np.array([
[.71,.71],
[0.,1.]
])
linear_profile = np.array([
[0.,0.],
[1.,1.]
])
I need a function that would spit out say a single or multiple coordinate values saying that based on these circular coordinates and your linear profile.. the two would intersect here.
def intersect(array1, array2):
# stuff
return computed_array

You can solve it algebraically. The parametric representation of points (x,y) on the line segment between (x1,y1) and (x2,y2) is:
x=tx1+(1−t)x2 and y=ty1+(1−t)y2,
where 0≤t≤1.
If you substitute it in the equation of the circle and solve the resulting quadratic equation for t, you can test if 0≤t01≤1, i.e line segment intersets with circle. The t01 values could be than used to calculate intersection points.

Shapely has some cool functions. According to this post, this code should work:
from shapely.geometry import LineString
from shapely.geometry import Point
p = Point(0,0)//center
c = p.buffer(0.71).boundary//radius
l = LineString([(0.,0.), (1., 1.)])//line point
i = c.intersection(l)
Apparently here i is the array you are looking for, also, check this post too. Hope this helps.

Related

Finding Intersections Region Based Trajectories vs. Line Trajectories

I have two trajectories (i.e. two lists of points) and I am trying to find the intersection points for both these trajectories. However, if I represent these trajectories as lines, I might miss real world intersections (just misses).
What I would like to do is to represent the line as a polygon with certain width around the points and then find where the two polygons intersect with each other.
I am using the python spatial library but I was wondering if anyone has done this before. Here is a picture of the line segments which don't intersect because they just miss each other. Below is the sample data code that represents the trajectory of two objects.
object_trajectory=np.array([[-3370.00427248, 3701.46800775],
[-3363.69164715, 3702.21408203],
[-3356.31277271, 3703.06477984],
[-3347.25951787, 3704.10740164],
[-3336.739511 , 3705.3958357 ],
[-3326.29355823, 3706.78035903],
[-3313.4987339 , 3708.2076586 ],
[-3299.53433345, 3709.72507366],
[-3283.15486406, 3711.47077376],
[-3269.23487255, 3713.05635557]])
target_trajectory=np.array([[-3384.99966703, 3696.41922372],
[-3382.43687562, 3696.6739521 ],
[-3378.22995178, 3697.08802862],
[-3371.98983789, 3697.71490469],
[-3363.5900481 , 3698.62666805],
[-3354.28520354, 3699.67613798],
[-3342.18581931, 3701.04853915],
[-3328.51519511, 3702.57528111],
[-3312.09691577, 3704.41961271],
[-3297.85543763, 3706.00878621]])
plt.plot(object_trajectory[:,0],object_trajectory[:,1],'b',color='b')
plt.plot(vehicle_trajectory[:,0],vehicle_trajectory[:,1],'b',color='r')
Let's say you have two lines defined by numpy arrays x1, y1, x2, and y2.
import numpy as np
You can create an array distances[i, j] containing the distances between the ith point in the first line and the jth point in the second line.
distances = ((x1[:, None] - x2[None, :])**2 + (y1[:, None] - y2[None, :])**2)**0.5
Then you can find indices where distances is less than some threshold you want to define for intersection. If you're thinking of the lines as having some thickness, the threshold would be half of that thickness.
threshold = 0.1
intersections = np.argwhere(distances < threshold)
intersections is now a N by 2 array containing all point pairs that are considered to be "intersecting" (the [i, 0] is the index from the first line, and [i, 1] is the index from the second line). If you want to get the set of all the indices from each line that are intersecting, you can use something like
first_intersection_indices = np.asarray(sorted(set(intersections[:, 0])))
second_intersection_indices = np.asarray(sorted(set(intersections[:, 1])))
From here, you can also determine how many intersections there are by taking only the center value for any consecutive values in each list.
L1 = []
current_intersection = []
for i in range(first_intersection_indices.shape[0]):
if len(current_intersection) == 0:
current_intersection.append(first_intersection_indices[i])
elif first_intersection_indices[i] == current_intersection[-1]:
current_intersection.append(first_intersection_indices[i])
else:
L1.append(int(np.median(current_intersection)))
current_intersection = [first_intersection_indices[i]]
print(len(L1))
You can use these to print the coordinates of each intersection.
for i in L1:
print(x1[i], y1[i])
Turns out that the shapely package already has a ton of convinience functions that get me very far with this.
from shapely.geometry import Point, LineString, MultiPoint
# I assume that self.line is of type LineString (i.e. a line trajectory)
region_polygon = self.line.buffer(self.lane_width)
# line.buffer essentially generates a nice interpolated bounding polygon around the trajectory.
# Now we can identify all the other points in the other trajectory that intersects with the region_polygon that we just generated. You can also use .intersection if you want to simply generate two polygon trajectories and find the intersecting polygon as well.
is_in_region = [region_polygon.intersects(point) for point in points]

Python: interpolating in a triangular mesh

Is there any decent Pythonic way to interpolate in a triangular mesh, or would I need to implement that myself? That is to say, given a (X,Y) point we'll call P, and a mesh (vertices at (X,Y) with value Z, forming triangular facets), estimate the value at P. So that means first find the facet that contains the point, then interpolate - ideally a higher order interpolation than just "linearly between the facet's vertices" (i.e., taking into account the neighboring facets)?
I could implement it myself, but if there's already something available in Python....
(I checked scipy.interpolate, but its "meshes" seem to just be regular point grids. This isn't a grid, it's a true 2D mesh; the vertices can be located anywhere.)
I often use matplotlib.tri for this purpose. Here Xv,Yv are the vertices (or nodes) of the triangles, and Zv the values at those nodes:
from matplotlib.tri import Triangulation, LinearTriInterpolator, CubicTriInterpolator
#you can add keyword triangles here if you have the triangle array, size [Ntri,3]
triObj = Triangulation(Xv,Yv)
#linear interpolation
fz = LinearTriInterpolator(triObj,Zv)
Z = fz(X,Y)
#cubic interpolation
fzc = CubicTriInterpolator(triObj,Zv)
Zc = fz(X,Y)

python - Finding the vertices of the cuboid surrounding a coordinate in a cuboidal 3-d grid with non-regular spacings

I will have a 3-d grid of points (defined by Cartesian vectors). For any given coordinate within the grid, I wish to find the 8 grid points making the cuboid which surrounds the given coordinate. I also need the distances between the vertices of the cuboid and the given coordinate. I have found a way of doing this for a meshgrid with regular spacings, but not for irregular spacings. I do not yet have an example of the irregularly spaced grid data, I just know that the algorithm will have to deal with them eventually. My solution for the regularly spaced points is based off of this post, Finding index of nearest point in numpy arrays of x and y coordinates and is as follows:
import scipy as sp
import numpy as np
x, y, z = np.mgrid[0:5, 0:10, 0:20]
# Example 3-d grid of points.
b = np.dstack((x.ravel(), y.ravel(), z.ravel()))[0]
tree = sp.spatial.cKDTree(b)
example_coord = np.array([1.5, 3.5, 5.5])
d, i = tree.query((example_coord), 8)
# i being the indices of the closest grid points, d being their distance from the
# given coordinate, example_coord
b[i[0]], d[0]
# This gives one of the points of the surrounding cuboid and its distance from
# example_coord
I am looking to make this algorithm run as efficiently as possible as it will need to be run a lot. Thanks in advance for your help.

Get a point on a plane at specific distance from initial point

I got this plane
from sympy.geometry.plane import Plane
p=Plane((0,5,0),(0,0,0),(5,7,0)) #2d first to make it easier
now I want to get a point on that plane 45deg from plane point one and lenght=sqrt(2). In this case that point will be (1,6,0)
I've tried this:
a=np.sqrt(2)*p.arbitrary_point(pi/4)
but it does not work as a coordinates return (1.0,8.07106781187,0.0)
the problem is that arbitrary_point returns a point in a circle of radius 1 about p1 of the Plane. I want to be able to change that radius.
Multiplying all of a point's coordinates by sqrt(2) moves it away from the origin (0,0,0). You want to move it away from p1 of the plane. This is what the scale method is for.
p.arbitrary_point(np.pi/4).scale(np.sqrt(2), np.sqrt(2), np.sqrt(2), p.p1)
returns Point3D(1, 6, 0).
(I'm assuming import numpy as np here, to match the setting of the question; the standard math module could be used instead of numpy.)

Calculating distances on grid

I have a 10 x 10 grid of cells (as a numpy array). I also have a list of 3 points on that grid. For each cell on the grid, I need to find the closest of the three points. I can do this in series of nested loops in python (2.7) which works but is slow (especially if I upscale to larger grids) but I suspect there is a faster way. Does anyone have any suggestions?
The simplest way I know of to calculate the distance between two points on a plane is using the Pythagorean theorem.
That is, picture a right angle triangle where the hypotenuse goes between the two points and the base of the triangle is parallel to the x axis and the height is parallel to the y axis. We then know that the distance (represented by the length of the hypotenuse) h adheres to the following: h^2 = a^2 + b^2, where a and b are the lengths of the two remaining sides of the triangle.
It's hard to give any other help without seeing your code. Have you tried something similar yet? You need to specify your question more if you want more specific answers.
If we assume that you know the point coord, then you can calculate the distance between a cell and the point using the distance formula: https://en.wikipedia.org/wiki/Distance
So for example, let's say that your cell correspond to 'x' and your 3 points correspond to y1, y2 and y3. You can simply get the distance between x - y1, x - y2 and x - y3 and then compare the three distances.
If we assume that you do not know the point coord, then you first have to find the point coord. You can find the point coord by scanning your grid and cheecking if a cell correspond to a point coord. When you found all your point, you can find the closest distance using the formula distance.
There is function in scipi called euclidean that will calculate the distances between points, if you want to loop through them.
from scipy.spatial.distance import euclidean
import numpy as np
a = np.array([1, 1, 1])
b = np.array([2, 2, 2])
dist = euclidean(a, b)
But I think for large data sets you would be better of using scipi's k-d tree to preform the search.

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