from c:/users/me/anaconda3/scripts I pip install biopythonbut it fails with the following errors:
c:\users\steph\anaconda3\include\pyconfig.h(243): fatal error C1083: Cannot open include file: 'basetsd.h': No such file or directory
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\BIN\\x86_amd64\\cl.exe' failed with exit status 2
Confusingly, I do have a pyconfig.h in c:\users\steph\anaconda3\include. Cannot find what an exit status 2 is either...
Biopython recommends installing through conda if your python is also installed through conda. See here.
Related
I also installed microsoft c++ 14.... but i really don't know how to get around this
Here is the error:
Fatal error from pip prevented installation. Full pip output in file:
C:\Users\aiatu\.local\pipx\logs\cmd_2022-12-23_22.25.32_pip_errors.log
pip failed to build packages:
bitarray
cytoolz
yarl
Some possibly relevant errors from pip install:
error: subprocess-exited-with-error
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio\\2022\\BuildTools\\VC\\Tools\\MSVC\\14.34.31933\\bin\\HostX86\\x64\\cl.exe' failed with exit code 2
cytoolz/dicttoolz.c(209): fatal error C1083: Non Š possibile aprire il file inclusione: 'longintrepr.h': No such file or directory
yarl/_quoting_c.c(196): fatal error C1083: Non Š possibile aprire il file inclusione: 'longintrepr.h': No such file or directory
Error installing eth-brownie.
Once again, here answering my own queston.
I had python 3.11.1, i deleted this python version and installed 3.10.9. and then i installed brownie via: pip install eth-brownie
I'm trying to run the command pip install yarl
I get this error:
LINK : fatal error LNK1158: can't execute 'rc.exe'
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\BIN\\x86_amd64\\link.exe' failed with exit code 1158
I've been trying installing this tools:
Also adding this folder to path: C:\Program Files (x86)\Windows Kits\10\bin\x64
Didn't work anything, thanks
i'm trying to install ivi package in pycharm, but received the following error:
running build_ext
building 'ivi.optimizations' extension
optimizations.c
C:\Users\tester\AppData\Local\Programs\Python\Python38\include\pyconfig.h(205): fatal error C1083: Cannot open include file: 'basetsd.h': No such file or directory
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio\\2019\\BuildTools\\VC\\Tools\\MSVC\\14.29.30133\\bin\\HostX86\\x64\\cl.exe' failed with exit code 2
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure
Encountered error while trying to install package.
Error log screenshot
Full log
using windows 7, and python 3.8.10 is installed.
Info: I am using Windows 10 with python 3.7.7 and pip 19.2.3
Problem: I was trying to install nes-py in cmd prompt using pip install nes-py, but during the Building wheel for nes-py (setup.py) ... error stage of the install I got the following error:
C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.25.28610\include\yvals.h(12): fatal error C1083: Cannot open include file: 'crtdbg.h': No such file or directory
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio\\2019\\BuildTools\\VC\\Tools\\MSVC\\14.25.28610\\bin\\HostX86\\x64\\cl.exe' failed with exit status 2
----------------------------------------
ERROR: Failed building wheel for nes-py
Edit: I copy and pasted over many files from the Windows SDK and now have a new error:
Generating code
Finished generating code
LINK : fatal error LNK1158: cannot run 'rc.exe'
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio\\2019\\BuildTools\\VC\\Tools\\MSVC\\14.26.28801\\bin\\HostX86\\x64\\link.exe' failed with exit status 1158
----------------------------------------
ERROR: Failed building wheel for nes-py
I solved this issue by installing node.js. This installed all the needed files for me and allowed me to install any packages that had a wheel. This isn't a very elegant fix since it also installed many files that I do not need, but it seems to work and is very simple.
I only solved this issue by installing Visual Studio Community (I had Visual Studio Code).
I did this following the comment here about the requirements to install py-nes that are already inside Visual Studio Community.
Try with completely new enviorment using conda create -n your_env_name python=3.7. I have created with python 3.7. It resolves the issue.
You just download and install this program and run the command again https://visualstudio.microsoft.com/visual-cpp-build-tools/
I can solve the problem - install SDK for Windows 10
screenshot
The below error occurs while installing pyradiomics packages using
python setup.py install
fatal error C1083: Cannot open include file: 'stdlib.h': No such file
or directory error: command 'C:\Program Files\Microsoft Visual
Studio 14.0\VC\bin\cl.exe' failed with exit status 2
This error indicates your compiler can't find the required header files to compile the PyRadiomics C Extensions' source code.
The easiest solution is to get the latest PyRadiomics wheel from PyPi (pip install pyradiomics), which are precompiled for 64-bit Python 2.7, 3.4, 3.4, 3.4 on windows, linux and mac.