I'm trying to install the library Neomodel to use Neo4j in my Django application but it raised many errors:
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip/commands/install.py", line 342, in run
prefix=options.prefix_path,
File "/Library/Python/2.7/site-packages/pip/req/req_set.py", line 778, in install
requirement.uninstall(auto_confirm=True)
File "/Library/Python/2.7/site-packages/pip/req/req_install.py", line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 299, in move
copytree(src, real_dst, symlinks=True)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 208, in copytree
raise Error, errors
Error: [('/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/pytz/__init__.py', '/tmp/pip-rVZOK9-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/pytz/__init__.py', "[Errno 1] Operation not permitted: '/tmp/pip-rVZOK9-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/pytz/__init__.py'")
There errors message is a lot of longer but I reduced it to be more concise. Also all the error are the same (Permission Denied). I try to install it using the command:
sudo pip install neomodel
I have never seen such an error and really don't know what to do to fix. Any help would be welcome.
You should avoid using sudo with pip.
You can run pip install neomodel --user to run without a virtualenv but it's generally a good practice to use a virtualenv instead.
Related
I am trying to install spacy. I am on CentOS Linux
!pip install -U spacy
in a jupyter notebook and everything was working fine. During the installation, I realized I intended to include the --user command since I intended to install for my user only, so I hit ctrl-c. At this point the installation is incomplete.
Trying to install the package again with pip is now giving me an error, regardless of whether I include the --user flag. I think the error, below, is related to the incomplete build. Does anyone know how to fix this?
Collecting spacy
Exception:
Traceback (most recent call last):
File "/opt/anaconda2/lib/python2.7/site-packages/pip/basecommand.py", line
215, in main
status = self.run(options, args)
File "/opt/anaconda2/lib/python2.7/site-packages/pip/commands/install.py",
line 335, in run
wb.build(autobuilding=True)
File "/opt/anaconda2/lib/python2.7/site-packages/pip/wheel.py", line 749, in
build
self.requirement_set.prepare_files(self.finder)
File "/opt/anaconda2/lib/python2.7/site-packages/pip/req/req_set.py", line
380, in prepare_files
ignore_dependencies=self.ignore_dependencies))
File "/opt/anaconda2/lib/python2.7/site-packages/pip/req/req_set.py", line
620, in _prepare_file
session=self.session, hashes=hashes)
File "/opt/anaconda2/lib/python2.7/site-packages/pip/download.py", line 809,
in unpack_url
unpack_file_url(link, location, download_dir, hashes=hashes)
File "/opt/anaconda2/lib/python2.7/site-packages/pip/download.py", line 715,
in unpack_file_url
unpack_file(from_path, location, content_type, link)
File "/opt/anaconda2/lib/python2.7/site-packages/pip/utils/__init__.py",
line 599, in unpack_file
flatten=not filename.endswith('.whl')
File "/opt/anaconda2/lib/python2.7/site-packages/pip/utils/__init__.py",
line 484, in unzip_file
zip = zipfile.ZipFile(zipfp, allowZip64=True)
File "/opt/anaconda2/lib/python2.7/zipfile.py", line 770, in __init__
self._RealGetContents()
File "/opt/anaconda2/lib/python2.7/zipfile.py", line 811, in _
RealGetContents
raise BadZipfile, "File is not a zip file"
BadZipfile: File is not a zip file`
Thanks everyone. A solution that worked for me was to go to $HOME/.cache/pip and delete the contents of http/ and wheels/
I am trying to pip install pandas on a mac. I have python 3.6 installed.
When I pip install in the terminal I get the following error:
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/commands/install.py", line 342, in run
prefix=options.prefix_path,
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_set.py", line 784, in install
**kwargs
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_install.py", line 851, in install
self.move_wheel_files(self.source_dir, root=root, prefix=prefix)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_install.py", line 1064, in move_wheel_files
isolated=self.isolated,
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/wheel.py", line 345, in move_wheel_files
clobber(source, lib_dir, True)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/wheel.py", line 316, in clobber
ensure_dir(destdir)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/utils/__init__.py", line 83, in ensure_dir
os.makedirs(path)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/os.py", line 157, in makedirs
mkdir(name, mode)
OSError: [Errno 13] Permission denied: '/Library/Python/2.7/site-packages/pandas'
Could you possibly edit the error into a formatted code block by highlighting it and pushing ctrl+k so it is easier to read? Thanks.
Edit: Also, I just looked through and at the bottom it says permission denied. Try rerunning the command as an admin. I.E try this command:
sudo pip install pandas
You might have already noticed, Mac come with a built in Python, python 2.7. If you read your traceback: /Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/basecommand.py it's pointing to the 2.7 dir. this dir is in the Library folder so you don't have permission to install to it.
But you state that you have Python 3.6 installed as well, so if you wanted to install to that indtead. Do pip3 install pandas or python3 -m pip install pandas this help specify the python version. And if you want to run python 3.6 in terminal, type python3 instead of just python
I'm fairly new to python so please bear with me. I installed the virtual env created a new environment and everything very smooth(great). so when I try to pip freeze it gives me all the global packages that are installed and not only the environment im in. Then I try to install django and it does not let me. This is the error that gives me...
→ pip install django
Collecting django
Downloading Django-1.9.5-py2.py3-none-any.whl (6.6MB)
100% |████████████████████████████████| 6.6MB 187kB/s
Installing collected packages: django
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip-8.1.1-py2.7.egg/pip/basecommand.py", line 209, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip-8.1.1-py2.7.egg/pip/commands/install.py", line 317, in run
prefix=options.prefix_path,
File "/Library/Python/2.7/site-packages/pip-8.1.1-py2.7.egg/pip/req/req_set.py", line 732, in install
**kwargs
File "/Library/Python/2.7/site-packages/pip-8.1.1-py2.7.egg/pip/req/req_install.py", line 835, in install
self.move_wheel_files(self.source_dir, root=root, prefix=prefix)
File "/Library/Python/2.7/site-packages/pip-8.1.1-py2.7.egg/pip/req/req_install.py", line 1030, in move_wheel_files
isolated=self.isolated,
File "/Library/Python/2.7/site-packages/pip-8.1.1-py2.7.egg/pip/wheel.py", line 344, in move_wheel_files
clobber(source, lib_dir, True)
File "/Library/Python/2.7/site-packages/pip-8.1.1-py2.7.egg/pip/wheel.py", line 315, in clobber
ensure_dir(destdir)
File "/Library/Python/2.7/site-packages/pip-8.1.1-py2.7.egg/pip/utils/__init__.py", line 83, in ensure_dir
os.makedirs(path)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/os.py", line 157, in makedirs
mkdir(name, mode)
OSError: [Errno 13] Permission denied: '/Library/Python/2.7/site-packages/django'
OK. I got it working. The problem was something with a cache directory. When I reinstalled virtualenv I used a flag plus sudo.
sudo pip install --no-cache-dir virtualenv
but new questions comes up.
How important is a cache directory for the environments?
Do I need one yes o no?
Thanks all for your awesome help.
I am trying to pip install virtualenv (and anything else) on OS X El Capitan and got the following error:
Exception:
Traceback (most recent call last):
File "/usr/local/lib/python2.7/site-packages/pip/basecommand.py", line 211, in main
status = self.run(options, args)
File "/usr/local/lib/python2.7/site-packages/pip/commands/install.py", line 311, in run
root=options.root_path,
File "/usr/local/lib/python2.7/site-packages/pip/req/req_set.py", line 646, in install
**kwargs
File "/usr/local/lib/python2.7/site-packages/pip/req/req_install.py", line 803, in install
self.move_wheel_files(self.source_dir, root=root)
File "/usr/local/lib/python2.7/site-packages/pip/req/req_install.py", line 998, in move_wheel_files
isolated=self.isolated,
File "/usr/local/lib/python2.7/site-packages/pip/wheel.py", line 339, in move_wheel_files
clobber(source, lib_dir, True)
File "/usr/local/lib/python2.7/site-packages/pip/wheel.py", line 282, in clobber
ensure_dir(dest) # common for the 'include' path
File "/usr/local/lib/python2.7/site-packages/pip/utils/__init__.py", line 71, in ensure_dir
os.makedirs(path)
File "/usr/lib/python2.7/os.py", line 157, in makedirs
mkdir(name, mode)
OSError: [Errno 1] Operation not permitted: '/usr/lib/python2.7/site-packages'
Looks pip is trying to write in '/usr/lib/python2.7/site-packages' and due to SIP in El Capitan it got denied.
But I was wondering why does pip needs to write there? How can I fix this?
I ran brew doctor
which gives
Your system is ready to brew.
So I think it is OK.
I tried brew reinstall python and it gives an odd error:
==> Reinstalling python
Error: /usr/local/opt/python is not a valid keg
which python gives
/usr/local/bin/python
So where in system has this weird thing that let pip fail
Update:
It looks my pip is pointing to system python rather than brewed python.
I changed the first line of pip to
#!/usr/local/bin/python
and problem is solved
You may need to brew link python, or unlink then link to get things pointing to the correct places.
I am new to using command line and apologize in advance for any confusion.
I am trying to install STAMP but I get an Errno 13 Permission denied as response.
Found existing installation: scipy 0.13.0b1
DEPRECATION: Uninstalling a distutils installed project (scipy) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project.
Uninstalling scipy-0.13.0b1:
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip-6.1.1-py2.7.egg/pip/basecommand.py", line 246, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip-6.1.1-py2.7.egg/pip/commands/install.py", line 352, in run
root=options.root_path,
File "/Library/Python/2.7/site-packages/pip-6.1.1-py2.7.egg/pip/req/req_set.py", line 687, in install
requirement.uninstall(auto_confirm=True)
File "/Library/Python/2.7/site-packages/pip-6.1.1-py2.7.egg/pip/req/req_install.py", line 730, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip-6.1.1-py2.7.egg/pip/req/req_uninstall.py", line 126, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip-6.1.1-py2.7.egg/pip/utils/__init__.py", line 292, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 302, in move
os.unlink(src)
OSError: [Errno 13] Permission denied: '/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/scipy-0.13.0b1-py2.7.egg-info'
I know this issue has been covered in depth but I cannot figure out how to apply the answers to my specific problem.
Any ideas?
Thank you in advance
TVAN
sudo pip install STAMP
whenever you see the phrase like this:"Permission denied", you should look up for this command.