Not sure why xlsx package not loading into R (It has been installed and downloaded without any error).
install.packages("xlsx")
library(xlsx)
Loading required package: rJava
Error: package or namespace load failed for ‘rJava’:
.onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Error: package ‘rJava’ could not be loaded
In addition: Warning message:
package ‘xlsx’ was built under R version 3.4.3
Please assist
Related
I try to deploy some .yaml file with code of Kubernetes, but get error
TASK [/cur/develop/inno/777/name.k8s/roles/deploy_k8s_dashboard : Apply the Kubernetes dashboard] **************************************************************************************************************************************************************************************
Monday 17 October 2022 13:52:07 +0200 (0:00:00.836) 0:00:01.410 ********
An exception occurred during task execution. To see the full traceback, use -vvv. The error was: ImportError: No module named kubernetes.dynamic.resource
fatal: [cibd1]: FAILED! => changed=false
error: No module named kubernetes.dynamic.resource
msg: Failed to import the required Python library (kubernetes) on bvm's Python /usr/bin/python. Please read the module documentation and install it in the appropriate location. If the required library is installed, but Ansible is using the wrong Python interpreter, please consult the documentation on ansible_python_interpreter
An exception occurred during task execution. To see the full traceback, use -vvv. The error was: ImportError: No module named kubernetes.dynamic.resource
fatal: [cibd1]: FAILED! => changed=false
error: No module named kubernetes.dynamic.resource
msg: Failed to import the required Python library (kubernetes) on bvm's Python /usr/bin/python. Please read the module documentation and install it in the appropriate location. If the required library is installed, but Ansible is using the wrong Python interpreter, please consult the documentation on ansible_python_interpreter
Could you please help with advice, How can I fix it?
I've had a similar problem. locally I had to execute the following
ansible-galaxy collection install kubernetes.core
On the target server make sure that you have python3 installed as python2 won't be enough. Once that is installed, I also had to define the below in my vars:
ansible_python_interpreter: /bin/python3
I am installing Tensorflow. I encountered the following problem:
I was installing Tensorflow from Source and I am following the Tensorflow website (https://www.tensorflow.org/install/source)
I had earlier installed Bazel 3.0.0 (the latest version) but got a similar error. Upon looking at other answers I figured out this error has something to do with the version of Bazel. Hence I uninstalled Bazel 3.0.0 and installed Bazel 0.27.1. But upon typing the following command(bazel build //tensorflow/tools/pip_package:build_pip_package) in the terminal, I am getting the following error:
WARNING: The following rc files are no longer being read, please transfer their contents or import their path into one of the standard rc files:
/home/aviraj/tensorflow/tools/bazel.rc
Starting local Bazel server and connecting to it...
ERROR: /home/aviraj/tensorflow/WORKSPACE:3:1: name 'http_archive' is not defined
ERROR: Error evaluating WORKSPACE file
ERROR: error loading package '': Encountered error while reading extension file 'closure/defs.bzl': no such package '#io_bazel_rules_closure//closure': error loading package 'external': Could not load //external package
ERROR: error loading package '': Encountered error while reading extension file 'closure/defs.bzl': no such package '#io_bazel_rules_closure//closure': error loading package 'external': Could not load //external package
INFO: Elapsed time: 2.023s
INFO: 0 processes.
FAILED: Build did NOT complete successfully (0 packages loaded)
Any help would be much appreciated. Thanks
Starting with version 0.20.0, http_archive native rule has been deprecated, it has to be loaded from: #bazel_tools//tools/build_defs/repo:http.bzl. I.e. you need to add the following (unless you have a customized version) in WORKSPACE or bzl files using it:
load("#bazel_tools//tools/build_defs/repo:http.bzl", "http_archive")
I'm new to python and need help with getting hunspell installed on my windows 10. The tool is PyCharm.
First I tried to install CyHunspell: pip install CyHunspell and got the following error msg:
RuntimeError: 'pkg-config' is not recognized as an internal or external command,operable program or batch file.
Then I tried installing PyHunspell instead and got the following error msg:
ERROR: Could not find a version that satisfies the requirement PyHunspell (from versions: none)
ERROR: No matching distribution found for PyHunspell
Then I tried installing hunspell directly and got the following error msg:
hunspell.cpp
hunspell.cpp(20): fatal error C1083: Cannot open include file: 'hunspell.hxx': No such file or directory
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\BIN\\x86_amd64\\cl.exe' failed with exit status 2
In my test code:
import hunspell
Result:
spellchecker = hunspell.HunSpell() failed with the following error msg:
AttributeError: module 'hunspell' has no attribute 'HunSpell'
I would think I'm not the first one who uses hunspell on windows 10, but somehow I can't seem to find info needed to get this to work.
The GNU Emacs documentation states here (underlined by me):
The EZWinPorts project provides many useful ports of recent versions of GNU and Unix software. This includes all the optional libraries used by Emacs (image libraries, libxml2, GnuTLS), RCS, Texinfo, a clone of man command, Grep, xz, bzip2, bsdtar, ID Utils, Findutils, Hunspell, Gawk, GNU Make, Groff, GDB.
You will indeed find Hunspell in the list of files of the EZWinPorts project on sourceforge.
Once unzipped, you shall find the executable hunspell.exe inside the bin folder. No installation required. The tool is to be used on the command-line. You probably should add it to your Windows Path.
Tested on my Windows 10 PC.
I'm running the following commands in python:
from rpy2.robjects.packages import importr
importr( 'ggplot2' )
This works fine in python-2.7.6 and rpy2-2.8.3. However it gives the following error when run on python-2.7.8 and rpy2-2.8.5 :
/usr/local/lib/python2.7/dist-packages/rpy2/rinterface/__init__.py:186: RRuntimeWarning: Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/usr/local/lib/R/site-library/Rcpp/libs/Rcpp.so':
/usr/local/lib/R/site-library/Rcpp/libs/Rcpp.so: undefined symbol: R_ClassSymbol
warnings.warn(x, RRuntimeWarning)
Segmentation fault (core dumped)
rpy2 is a package which provide access to R when you are using python. So firstly make sure that you enabled R-shared libs when you compiles you R as follows:
./configure --prefix=* --with-x=no --enable-R-shlib=yes
make sure you have specified the following environment variable before you distribute your rpy2 package:
export C_INCLUDE_PATH=/path/to/R/lib64/R/include
Last but not least, only those packages installed when all of this requirements are satisfied can be rightly imported in python by importr. And if not, you may need to reinstall the R packages.
I recently started trying to switch to canopy from ipython notebooks, which I switched to from MATLAB. I am working towards getting a matlab-like experience for development and research.
I am doing most of these setups cross-platform, but I am starting on OS X.
I have been attempting to install packages for use in canopy, some of which require compilation such as SimpleITK and VTK6.0. I had these both successfully installed in my regular python2.7 installation, but I'm having some trouble installing them for canopy. Right now, Im working on recompiling SimpleITK/Superbuild with CMAKE to recreate the python wrappers. It asks for your python executable, include dir, and python lib location. I found the python executeable from sys.executable from within canopy, and the include dir with 'mdfind -name Python.h, which turned out to be the default location, I used the default python lib.
These were
executeable: /Users/jmerkow/Library/Enthought/Canopy_64bit/User/bin/python
Include: /System/Library/Frameworks/Python.framework/Headers
Lib: /usr/lib/libpython2.7.dylib
But I get the following error upon make:
AssertionError: Filename /Applications/Canopy.app/appdata/canopy-1.1.0.1371.macosx-x86_64/Canopy.app/Contents/lib/python2.7/os.py does not start with any of these prefixes: ['/Users/jmerkow/Library/Enthought/Canopy_64bit/User', '/Library/Python/2.7/site-packages', '/Users/jmerkow/Library/Enthought/Canopy_64bit/User/Extras/lib/python', '/Users/jmerkow/Library/Python/2.7/site-packages', '/Users/jmerkow/.local/lib/python/2.7/site-packages', '/Users/jmerkow/Library/Python/2.7/lib/python/site-packages']
ERROR
-- Installing numpy from /Users/jmerkow/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/numpy to /numpy
ERROR
/bin/sh: ../Testing/Installation/PythonVirtualenv/bin/python: No such file or directory
make[5]: *** [lib/_SimpleITK.so] Error 127
make[4]: *** [Wrapping/CMakeFiles/SimpleITK_PYTHON.dir/all] Error 2
make[3]: *** [all] Error 2
make[2]: *** [SimpleITK-prefix/src/SimpleITK-stamp/SimpleITK-build] Error 2
make[1]: *** [CMakeFiles/SimpleITK.dir/all] Error 2
make: *** [all] Error 2
Also, anyother tips to help me get this done are very welcome
EDIT BELOW
So I attempted to compile using:
/System/Library/Frameworks/Python.framework/Versions/Current/bin/python
/System/Library/Frameworks/Python.framework/Versions/Current/include/python2.7/
/System/Library/Frameworks/Python.framework/Versions/Current/lib/libpython2.7.dylib
This compiled and created and egg file named
SimpleITK-0.7.0.dev88_ge297c-py2.7-macosx-10.8-intel.egg
but I get the following error when I use enpkg
Traceback (most recent call last):
File "/Users/jmerkow/Library/Enthought/Canopy_64bit/User/bin/enpkg", line 10, in
sys.exit(main())
File "/Applications/Canopy.app/appdata/canopy-1.1.0.1371.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/enstaller/main.py", line 702, in main
reqs.append(Req(name + ' ' + version))
File "/Applications/Canopy.app/appdata/canopy-1.1.0.1371.macosx-x86_64/Canopy.app/Contents/lib/python2.7/site-packages/enstaller/resolve.py", line 32, in init
raise Exception("Not a valid requirement: %r" % req_string)
Exception: Not a valid requirement: 'SimpleITK 0.7.0.dev88_ge297c-py2.7-macosx-10.8-intel.egg'
with easy_install I get this error:
Processing SimpleITK-0.7.0.dev88_ge297c-py2.7-macosx-10.8-intel.egg
removing '/Users/jmerkow/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/SimpleITK-0.7.0.dev88_ge297c-py2.7-macosx-10.8-intel.egg' (and everything under it)
creating /Users/jmerkow/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/SimpleITK-0.7.0.dev88_ge297c-py2.7-macosx-10.8-intel.egg
Extracting SimpleITK-0.7.0.dev88_ge297c-py2.7-macosx-10.8-intel.egg to /Users/jmerkow/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages
SimpleITK 0.7.0.dev88-ge297c is already the active version in easy-install.pth
Installed /Users/jmerkow/Library/Enthought/Canopy_64bit/User/lib/python2.7/site-packages/SimpleITK-0.7.0.dev88_ge297c-py2.7-macosx-10.8-intel.egg
Processing dependencies for SimpleITK==0.7.0.dev88-ge297c
Searching for SimpleITK==0.7.0.dev88-ge297c
Reading cant post
Reading cant post
Reading cant post
No local packages or download links found for SimpleITK==0.7.0.dev88-ge297c
error: Could not find suitable distribution for Requirement.parse('SimpleITK==0.7.0.dev88-ge297c')
It looked like I installed it, so I tried to import:
import SimpleITK
Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6
You have configure SimpleITK to use your system python executable, library and include files. However, you are trying to run with the Canopy distribution. They are not binary compatible and the mismatch caused that type of program termination.
You canopy python executable was correctly found:
/Users/jmerkow/Library/Enthought/Canopy_64bit/User/bin/python
But you need to make the PYTHON_INCLUDE_DIR and PYTHON_LIBRARY consistent. Try the following commands to help you determine the correct path:
find /Users/jmerkow/Library/Enthought/Canopy_64bit/ -name Python.h
find /Users/jmerkow/Library/Enthought/Canopy_64bit/ -name lib python*.dylib