I am trying to learn my way around Cython, and I am following the official documentation. Recently, i tried to do the tutorial provided in "http://docs.cython.org/en/latest/src/tutorial/profiling_tutorial.html".
The objective here is to profile a Cython document.
This is where I got into trouble.
The function to be profiles is (file "calc_pi.py"):
def recip_square(i):
return 1./i**2
def approx_pi(n=10000000):
val = 0.
for k in range(1,n+1):
val += recip_square(k)
return (6 * val)**.5
The script to profile the functions (as posted in the document) is:
import pstats, cProfile
import calc_pi
cProfile.runctx("calc_pi.approx_pi()", globals(), locals(), "Profile.prof")
s = pstats.Stats("Profile.prof")
s.strip_dirs().sort_stats("time").print_stats()
I am not exactly sure which command to run, and if this is what raises the error. However, in their page, there is no reference to thisi. So I simply run "python3 profile.py", which yields the follwing error:
AttributeError: module 'cProfile' has no attribute 'runctx'
I know that probably my error is stupid and minimum, but after googleing and checking stackoverflow for a while, I could not find the answer.
Thank you for your help.
I faced the same issue here.
The problem was the name of the file profile.py.
Just use a different name (as suggested in here)
Related
I'm new to using rdkit but can't find any forum posts online addressing this but I've been trying to use the functions in rdkit.Chem.Descriptors as follows:
from rdkit import Chem
mol = Chem.MolFromSmiles('CC')
Descriptors.MolWt(mol)
this should just return the molecular weight = 30.07 of the molecule simply and I took this from the documentation but it just gives me an error saying:
NameError: name 'Descriptors' is not defined
I have no idea why - I tried changing versions but this has made no difference. It seems to be an error inherent to all functions in the Descriptor class.
I've also tried explicitly importing the Descriptor submodule/class and this doesn't work either.
from rdkit.Chem import Descriptors
is the correct way to import module for this code to work
I try to download a bingads report using python SDK, but I keep getting an error says: "Type not found: 'Aggregation'" after submitting a report request. I've tried all 4 options mentioned in the following link:
https://github.com/BingAds/BingAds-Python-SDK/blob/master/examples/v13/report_requests.py
Authentication process prior to request works just fine.
I execute the following:
report_request = get_report_request(authorization_data.account_id)
reporting_download_parameters = ReportingDownloadParameters(
report_request=report_request,
result_file_directory=FILE_DIRECTORY,
result_file_name=RESULT_FILE_NAME,
overwrite_result_file=True, # Set this value true if you want to overwrite the same file.
timeout_in_milliseconds=TIMEOUT_IN_MILLISECONDS
)
output_status_message("-----\nAwaiting download_report...")
download_report(reporting_download_parameters)
after a careful debugging, it seems that the program fails when trying to execute a command within "reporting_service_manager.py". Here is workflow:
download_report(self, download_parameters):
report_file_path = self.download_file(download_parameters)
then:
download_file(self, download_parameters):
operation = self.submit_download(download_parameters.report_request)
then:
submit_download(self, report_request):
self.normalize_request(report_request)
response = self.service_client.SubmitGenerateReport(report_request)
SubmitGenerateReport starts a sequence of events ending with a call to "_SeviceCall.init" function within "service_client.py", returning an exception "Type not found: 'Aggregation'"
try:
response = self.service_client.soap_client.service.__getattr__(self.name)(*args, **kwargs)
return response
except Exception as ex:
if need_to_refresh_token is False \
and self.service_client.refresh_oauth_tokens_automatically \
and self.service_client._is_expired_token_exception(ex):
need_to_refresh_token = True
else:
raise ex
Can anyone shed some light? .
Thanks
Please be sure to set Aggregation e.g., as shown here.
aggregation = 'Daily'
If the report type does not use aggregation, you can set Aggregation=None.
Does this help?
This may be a bit late 2 months after the fact but maybe this will help someone else. I had the same error (though I suppose it may not be the same issue). It does look like you did what I did (and I'm sure others will as well): copy-paste the Microsoft example code and tried to run it only to find that it didn't work.
I spent quite some time trying to debug the issue and it looked to me like the XML wasn't being searched correctly. I was using suds-py3 for the script at the time so I tried suds-community and everything just worked after that.
I also re-read the Bing Ads API walkthrough for getting started again and found that they recommend suds-jurko instead.
Long story short: If you want to use the bingads API don't use suds-py3, use either suds-community (which I can confirm works for everything I've used the API for) or suds-jurko (which is the one recommended by Microsoft).
I wanted to learn how to use python modules in matlab. Therefore I wrote a trivial implementation of substring:
def substring(string, end, start=0):
if int(start) != 0:
return string[int(start):int(end)]
else:
return string[:int(end)]
I put it into a file named substring.py which is saved in the matlab working directory.
I added matlab work folder to python search path (followed the instructions here https://www.mathworks.com/help/matlab/matlab_external/call-user-defined-custom-module.html).
Then I tried to call my function in matlab:
x_label = py.substring.substring(fastaContent.id, int8(40));
I ran the matlab code and got this in console:
Error using substring (line 3)
Python Error: TypeError: slice indices must be integers or None or have an __index__ method
fastaContent.id is a valid string. I also wrapped 40 with int8() but it didn't help.
I would appreciate any help.
#Edit: I think it is worth mentioning that the function works fine called with python.
I`m trying to learn the programming on quantum computers.
I have installed qiskit in VS Code (all qiskit extentions available in VS Code market) , python compilator (from Vs Code market "Python" and "Python for VSCode"). I have set up my qikit API for correct working
When I run the exemple I get erros: "Instance of 'QuantumCircuit' has no 'h' member"
What shoud I do?
The code:
from qiskit import ClassicalRegister, QuantumRegister
from qiskit import QuantumCircuit, execute
q = QuantumRegister(2)
c = ClassicalRegister(2)
qc = QuantumCircuit(q)
qc.h(q[0])
qc.cx(q[0], q[1])
qc.measure(q, c)
job_sim = execute(qc, 'local_qasm_simulator')
sim_result = job_sim.result()
print(sim_result.get_counts(qc))
========================
The same error after adding comment # pylint: disable=no-member
The errors in question are coming from pylint, a linter, not from python itself. While pylint is pretty clever, some constructs (particularly those involving dynamically-added properties) are beyond its ability to understand. When you encounter situations like this, the best course of action is twofold:
Check the docs, code, etc. to make absolutely sure the code that you've written is right (i.e. verify that the linter result is a false positive)
Tell the linter that you know what you're doing and it should ignore the false positive
user2357112 took care of the first step in the comments above, demonstrating that the property gets dynamically set by another part of the library.
The second step can be accomplished for pylint by adding a comment after each of the offending lines telling it to turn of that particular check for that particular line:
qc.h(q[0]) # pylint: disable=no-member
Alright, so a couple days ago I decided to try and write a primitive wrapper for the PARI library. Ever since then I've been playing with ctypes library in loading the dll and accessing the functions contained using code similar to the following:
from ctypes import *
libcyg=CDLL("<path/cygwin1.dll") #It needs cygwin to be loaded. Not sure why.
pari=CDLL("<path>/libpari-gmp-2.4.dll")
print pari.fibo #fibonacci function
#prints something like "<_FuncPtr object at 0x00BA5828>"
So the functions are there and they can potentially be accessed, but I always receive an access violation no matter what I try. For example:
pari.fibo(5) #access violation
pari.fibo(c_int(5)) #access violation
pari.fibo.argtypes = [c_long] #setting arguments manually
pari.fibo.restype = long #set the return type
pari.fibo(byref(c_int(5))) #access violation reading 0x04 consistently
and any variation on that, including setting argtypes to receive pointers.
The Pari .dll is written in C and the fibonacci function's syntax within the library is GEN fibo(long x).
Could it be the return type that's causing these errors, as it is not a standard int or long but a GEN type, which is unique to the PARI library? Any help would be appreciated. If anyone is able to successfully load the library and use ANY function from within python, please tell; I've been at this for hours now.
EDIT: Seems as though I was simply forgetting to initialize the library. After a quick pari.pari_init(4000000,500000) it stopped erroring. Now my problem lies in the in the fact that it returns a GEN object; which is fine, but whenever I try to reference the address to which it points, it's always 33554435, which I presume is still an address. I'm trying further commands and I'll update if I succeed in getting the correct value of something.
You have two problems here, one give fibo the correct return type and two convert the GEN return type to the value you are looking for.
Poking around the source code a bit, you'll find that GEN is defined as a pointer to a long. Also, at looks like the library provides some converting/printing GENs. I focused in on GENtostr since it would probably be safer for all the pari functions.
import cytpes
pari = ctypes.CDLL("./libpari.so.2.3.5") #I did this under linux
pari.fibo.restype = ctypes.POINTER(ctypes.c_long)
pari.GENtostr.restype = ctypes.POINTER(ctypes.c_char)
pari.pari_init(4000000,500000)
x = pari.fibo(100)
y = pari.GENtostr(x)
ctypes.string_at(y)
Results in:
'354224848179261915075'