This question already has answers here:
How to count consecutive repetitions of a substring in a string?
(4 answers)
Closed 1 year ago.
I'm working on a cs50/pset6/dna project. I'm struggling with finding a way to analyze a sequence of strings, and gather the maximum number of times a certain sequence of characters repeats consecutively. Here is an example:
String: JOKHCNHBVDBVDBVDJHGSBVDBVD
Sequence of characters I should look for: BVD
Result: My function should be able to return 3, because in one point the characters BVD repeat three times consecutively, and even though it repeats again two times, I should look for the time that it repeats the most number of times.
It's a bit lame, but one "brute-force"ish way would be to just check for the presence of the longest substring possible. As soon as a substring is found, break out of the loop:
EDIT - Using a function might be more straight forward:
def get_longest_repeating_pattern(string, pattern):
if not pattern:
return ""
for i in range(len(string)//len(pattern), 0, -1):
current_pattern = pattern * i
if current_pattern in string:
return current_pattern
return ""
string = "JOKHCNHBVDBVDBVDJHGSBVDBVD"
pattern = "BVD"
longest_repeating_pattern = get_longest_repeating_pattern(string, pattern)
print(len(longest_repeating_pattern))
EDIT - explanation:
First, just a simple for-loop that starts at a larger number and goes down to a smaller number. For example, we start at 5 and go down to 0 (but not including 0), with a step size of -1:
>>> for i in range(5, 0, -1):
print(i)
5
4
3
2
1
>>>
if string = "JOKHCNHBVDBVDBVDJHGSBVDBVD", then len(string) would be 26, if pattern = "BVD", then len(pattern) is 3.
Back to my original code:
for i in range(len(string)//len(pattern), 0, -1):
Plugging in the numbers:
for i in range(26//3, 0, -1):
26//3 is an integer division which yields 8, so this becomes:
for i in range(8, 0, -1):
So, it's a for-loop that goes from 8 to 1 (remember, it doesn't go down to 0). i takes on the new value for each iteration, first 8 , then 7, etc.
In Python, you can "multiply" strings, like so:
>>> pattern = "BVD"
>>> pattern * 1
'BVD'
>>> pattern * 2
'BVDBVD'
>>> pattern * 3
'BVDBVDBVD'
>>>
A slightly less bruteforcey solution:
string = 'JOKHCNHBVDBVDBVDJHGSBVDBVD'
key = 'BVD'
len_k = len(key)
max_l = 0
passes = 0
curr_len=0
for i in range(len(string) - len_k + 1): # split the string into substrings of same len as key
if passes > 0: # If key was found in previous sequences, pass ()this way, if key is 'BVD', we will ignore 'VD.' and 'D..'
passes-=1
continue
s = string[i:i+len_k]
if s == key:
curr_len+=1
if curr_len > max_l:
max_l=curr_len
passes = len(key)-1
if prev_s == key:
if curr_len > max_l:
max_l=curr_len
else:
curr_len=0
prev_s = s
print(max_l)
You can do that very easily, elegantly and efficiently using a regex.
We look for all sequences of at least one repetition of your search string. Then, we just need to take the maximum length of these sequences, and divide by the length of the search string.
The regex we use is '(:?<your_sequence>)+': at least one repetition (the +) of the group (<your_sequence>). The :? is just here to make the group non capturing, so that findall returns the whole match, and not just the group.
In case there is no match, we use the default parameter of the max function to return 0.
The code is very short, then:
import re
def max_consecutive_repetitions(search, data):
search_re = re.compile('(?:' + search + ')+')
return max((len(seq) for seq in search_re.findall(data)), default=0) // len(search)
Sample run:
print(max_consecutive_repetitions("BVD", "JOKHCNHBVDBVDBVDJHGSBVDBVD"))
# 3
This is my contribution, I'm not a professional but it worked for me (sorry for bad English)
results = {}
# Loops through all the STRs
for i in range(1, len(reader.fieldnames)):
STR = reader.fieldnames[i]
j = 0
s=0
pre_s = 0
# Loops through all the characters in sequence.txt
while j < (len(sequence) - len(STR)):
# checks if the character we are currently looping is the same than the first STR character
if STR[0] == sequence[j]:
# while the sub-string since j to j - STR lenght is the same than STR, I called this a streak
while sequence[j:(j + len(STR))] == STR:
# j skips to the end of sub-string
j += len(STR)
# streaks counter
s += 1
# if s > 0 means that that the whole STR and sequence coincided at least once
if s > 0:
# save the largest streak as pre_s
if s > pre_s:
pre_s = s
# restarts the streak counter to continue exploring the sequence
s=0
j += 1
# assigns pre_s value to a dictionary with the current STR as key
results[STR] = pre_s
print(results)
This question already has answers here:
How to remove duplicates only if consecutive in a string? [duplicate]
(9 answers)
Closed 3 years ago.
I'm trying to remove duplicates from my code but when this code encounters some cases, it fails with 'String Index Out Of Range' error.
eg., i/p - tadayutaysgcgtttggytytyyyikk
o/p - tadayutaysgcgtgytytyik
def removeDups(str):
smallOut = ''
if len(str) == 1 or len(str) == 0:
return str
if str[0] == str[1]:
smallOut = removeDups(str[2:])
if str[1] == smallOut[0]:
return smallOut
else:
return str[1] + smallOut
else:
smallOut = removeDups(str[1:])
return str[0] + smallOut
string = input().strip()
print(removeDups(string))
i/p - tadayutaysgcgtttggytytyyyikk
o/p - tadayutaysgcgtgytytyik
For removing duplicates you can use re module:
import re
s = 'tadayutaysgcgtttggytytyyyikk'
print( re.sub(r'(.)\1+', r'\1', s) )
Prints:
tadayutaysgcgtgytytyik
Or: without re, using itertools.groupby:
from itertools import groupby
s = 'tadayutaysgcgtttggytytyyyikk'
print(''.join(v for v, _ in groupby(s)))
Prints:
tadayutaysgcgtgytytyik
I use a standard approach for removing consecutive duplicates. For each character, keep incrementing the pointer till the current and the next are same.
ans = ""
s = 'tadayutaysgcgtttggytytyyyikk'
i=0
while i<len(s):
cnt = 1
ans = ans+s[i]
while i+1<len(s) and s[i]==s[i+1]:
i+=1
i+=1
ans
This question already has answers here:
How do I reverse a string in Python?
(19 answers)
Closed 6 years ago.
I'm stuck at an exercise where I need to reverse a random string in a function using only a loop (for loop or while?).
I can not use ".join(reversed(string)) or string[::-1] methods here so it's a bit tricky.
My code looks something like this:
def reverse(text):
while len(text) > 0:
print text[(len(text)) - 1],
del(text[(len(text)) - 1]
I use the , to print out every single letter in text on the same line!
I get invalid syntax on del(text[(len(text)) - 1]
Any suggestions?
Python string is not mutable, so you can not use the del statement to remove characters in place. However you can build up a new string while looping through the original one:
def reverse(text):
rev_text = ""
for char in text:
rev_text = char + rev_text
return rev_text
reverse("hello")
# 'olleh'
The problem is that you can't use del on a string in python.
However this code works without del and will hopefully do the trick:
def reverse(text):
a = ""
for i in range(1, len(text) + 1):
a += text[len(text) - i]
return a
print(reverse("Hello World!")) # prints: !dlroW olleH
Python strings are immutable. You cannot use del on string.
text = 'abcde'
length = len(text)
text_rev = ""
while length>0:
text_rev += text[length-1]
length = length-1
print text_rev
Hope this helps.
Here is my attempt using a decorator and a for loop. Put everything in one file.
Implementation details:
def reverse(func):
def reverse_engine(items):
partial_items = []
for item in items:
partial_items = [item] + partial_items
return func(partial_items)
return reverse_engine
Usage:
Example 1:
#reverse
def echo_alphabets(word):
return ''.join(word)
echo_alphabets('hello')
# olleh
Example 2:
#reverse
def echo_words(words):
return words
echo_words([':)', '3.6.0', 'Python', 'Hello'])
# ['Hello', 'Python', '3.6.0', ':)']
Example 3:
#reverse
def reverse_and_square(numbers):
return list(
map(lambda number: number ** 2, numbers)
)
reverse_and_square(range(1, 6))
# [25, 16, 9, 4, 1]
This question already has answers here:
String count with overlapping occurrences [closed]
(25 answers)
Closed 1 year ago.
Say I have string = 'hannahannahskdjhannahannah' and I want to count the number of times the string hannah occurs, I can't simply use count, because that only counts the substring once in each case. That is, I am expecting to return 4 but only returns 2 when I run this with string.count('hannah').
You could use a running index to fetch the next occurance:
bla = 'hannahannahskdjhannahannah'
cnt = 0
idx = 0
while True:
idx = bla.find('hannah', idx)
if idx >= 0:
cnt += 1
idx += 1
else:
break
print(cnt)
Gives:
>> 4
How about something like this?
>>> d = {}
>>> string = 'hannahannahskdjhannahannah'
>>> for i in xrange(0,len(string)-len('hannah')+1):
... if string[i:i+len('hannah')] == 'hannah':
... d['hannah'] = d.get('hannah',0)+1
...
>>> d
{'hannah': 4}
>>>
This searches the string for hannah by splicing the string iteratively from index 0 all the way up to the length of the string minus the length of hannah
'''
s: main string
sub: sub-string
count: number of sub-strings found
p: use the found sub-string's index in p for finding the next occurrence of next sub-string
'''
count=0
p=0
for letter in s:
p=s.find(sub,p)
if(p!=-1):
count+=1
p+=1
print count
If you want to count also nonconsecutive substrings, this is the way to do it
def subword(lookup,whole):
if len(whole)<len(lookup):
return 0
if lookup==whole:
return 1
if lookup=='':
return 1
if lookup[0]==whole[0]:
return subword(lookup[1:],whole[1:])+subword(lookup,whole[1:])
return subword(lookup,whole[1:])
def Count_overlap(string, substring):
count = 0
start = 0
while start < len(string):
pos = string.find(substring, start)
if pos != -1:
start = pos + 1
count += 1
else:
break
return count
string = "hannahannahskdjhannahannah"
print(Count_overlap(string, "hannah"))
Don't want to answer this for you as it's simple enough to work out yourself.
But if I were you I'd use the string.find() method which takes the string you're looking for and the position to start looking from, combined with a while loop which uses the result of the find method as it's condition in some way.
That should in theory give you the answer.
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What's the best way to count the number of occurrences of a given string, including overlap in Python? This is one way:
def function(string, str_to_search_for):
count = 0
for x in xrange(len(string) - len(str_to_search_for) + 1):
if string[x:x+len(str_to_search_for)] == str_to_search_for:
count += 1
return count
function('1011101111','11')
This method returns 5.
Is there a better way in Python?
Well, this might be faster since it does the comparing in C:
def occurrences(string, sub):
count = start = 0
while True:
start = string.find(sub, start) + 1
if start > 0:
count+=1
else:
return count
>>> import re
>>> text = '1011101111'
>>> len(re.findall('(?=11)', text))
5
If you didn't want to load the whole list of matches into memory, which would never be a problem! you could do this if you really wanted:
>>> sum(1 for _ in re.finditer('(?=11)', text))
5
As a function (re.escape makes sure the substring doesn't interfere with the regex):
def occurrences(text, sub):
return len(re.findall('(?={0})'.format(re.escape(sub)), text))
>>> occurrences(text, '11')
5
You can also try using the new Python regex module, which supports overlapping matches.
import regex as re
def count_overlapping(text, search_for):
return len(re.findall(search_for, text, overlapped=True))
count_overlapping('1011101111','11') # 5
Python's str.count counts non-overlapping substrings:
In [3]: "ababa".count("aba")
Out[3]: 1
Here are a few ways to count overlapping sequences, I'm sure there are many more :)
Look-ahead regular expressions
How to find overlapping matches with a regexp?
In [10]: re.findall("a(?=ba)", "ababa")
Out[10]: ['a', 'a']
Generate all substrings
In [11]: data = "ababa"
In [17]: sum(1 for i in range(len(data)) if data.startswith("aba", i))
Out[17]: 2
def count_substring(string, sub_string):
count = 0
for pos in range(len(string)):
if string[pos:].startswith(sub_string):
count += 1
return count
This could be the easiest way.
A fairly pythonic way would be to use list comprehension here, although it probably wouldn't be the most efficient.
sequence = 'abaaadcaaaa'
substr = 'aa'
counts = sum([
sequence.startswith(substr, i) for i in range(len(sequence))
])
print(counts) # 5
The list would be [False, False, True, False, False, False, True, True, False, False] as it checks all indexes through the string, and because int(True) == 1, sum gives us the total number of matches.
s = "bobobob"
sub = "bob"
ln = len(sub)
print(sum(sub == s[i:i+ln] for i in xrange(len(s)-(ln-1))))
How to find a pattern in another string with overlapping
This function (another solution!) receive a pattern and a text. Returns a list with all the substring located in the and their positions.
def occurrences(pattern, text):
"""
input: search a pattern (regular expression) in a text
returns: a list of substrings and their positions
"""
p = re.compile('(?=({0}))'.format(pattern))
matches = re.finditer(p, text)
return [(match.group(1), match.start()) for match in matches]
print (occurrences('ana', 'banana'))
print (occurrences('.ana', 'Banana-fana fo-fana'))
[('ana', 1), ('ana', 3)]
[('Bana', 0), ('nana', 2), ('fana', 7), ('fana', 15)]
My answer, to the bob question on the course:
s = 'azcbobobegghaklbob'
total = 0
for i in range(len(s)-2):
if s[i:i+3] == 'bob':
total += 1
print 'number of times bob occurs is: ', total
Here is my edX MIT "find bob"* solution (*find number of "bob" occurences in a string named s), which basicaly counts overlapping occurrences of a given substing:
s = 'azcbobobegghakl'
count = 0
while 'bob' in s:
count += 1
s = s[(s.find('bob') + 2):]
print "Number of times bob occurs is: {}".format(count)
If strings are large, you want to use Rabin-Karp, in summary:
a rolling window of substring size, moving over a string
a hash with O(1) overhead for adding and removing (i.e. move by 1 char)
implemented in C or relying on pypy
That can be solved using regex.
import re
def function(string, sub_string):
match = re.findall('(?='+sub_string+')',string)
return len(match)
def count_substring(string, sub_string):
counter = 0
for i in range(len(string)):
if string[i:].startswith(sub_string):
counter = counter + 1
return counter
Above code simply loops throughout the string once and keeps checking if any string is starting with the particular substring that is being counted.
re.subn hasn't been mentioned yet:
>>> import re
>>> re.subn('(?=11)', '', '1011101111')[1]
5
def count_overlaps (string, look_for):
start = 0
matches = 0
while True:
start = string.find (look_for, start)
if start < 0:
break
start += 1
matches += 1
return matches
print count_overlaps ('abrabra', 'abra')
Function that takes as input two strings and counts how many times sub occurs in string, including overlaps. To check whether sub is a substring, I used the in operator.
def count_Occurrences(string, sub):
count=0
for i in range(0, len(string)-len(sub)+1):
if sub in string[i:i+len(sub)]:
count=count+1
print 'Number of times sub occurs in string (including overlaps): ', count
For a duplicated question i've decided to count it 3 by 3 and comparing the string e.g.
counted = 0
for i in range(len(string)):
if string[i*3:(i+1)*3] == 'xox':
counted = counted +1
print counted
An alternative very close to the accepted answer but using while as the if test instead of including if inside the loop:
def countSubstr(string, sub):
count = 0
while sub in string:
count += 1
string = string[string.find(sub) + 1:]
return count;
This avoids while True: and is a little cleaner in my opinion
This is another example of using str.find() but a lot of the answers make it more complicated than necessary:
def occurrences(text, sub):
c, n = 0, text.find(sub)
while n != -1:
c += 1
n = text.find(sub, n+1)
return c
In []:
occurrences('1011101111', '11')
Out[]:
5
Given
sequence = '1011101111'
sub = "11"
Code
In this particular case:
sum(x == tuple(sub) for x in zip(sequence, sequence[1:]))
# 5
More generally, this
windows = zip(*([sequence[i:] for i, _ in enumerate(sequence)][:len(sub)]))
sum(x == tuple(sub) for x in windows)
# 5
or extend to generators:
import itertools as it
iter_ = (sequence[i:] for i, _ in enumerate(sequence))
windows = zip(*(it.islice(iter_, None, len(sub))))
sum(x == tuple(sub) for x in windows)
Alternative
You can use more_itertools.locate:
import more_itertools as mit
len(list(mit.locate(sequence, pred=lambda *args: args == tuple(sub), window_size=len(sub))))
# 5
A simple way to count substring occurrence is to use count():
>>> s = 'bobob'
>>> s.count('bob')
1
You can use replace () to find overlapping strings if you know which part will be overlap:
>>> s = 'bobob'
>>> s.replace('b', 'bb').count('bob')
2
Note that besides being static, there are other limitations:
>>> s = 'aaa'
>>> count('aa') # there must be two occurrences
1
>>> s.replace('a', 'aa').count('aa')
3
def occurance_of_pattern(text, pattern):
text_len , pattern_len = len(text), len(pattern)
return sum(1 for idx in range(text_len - pattern_len + 1) if text[idx: idx+pattern_len] == pattern)
I wanted to see if the number of input of same prefix char is same postfix, e.g., "foo" and """foo"" but fail on """bar"":
from itertools import count, takewhile
from operator import eq
# From https://stackoverflow.com/a/15112059
def count_iter_items(iterable):
"""
Consume an iterable not reading it into memory; return the number of items.
:param iterable: An iterable
:type iterable: ```Iterable```
:return: Number of items in iterable
:rtype: ```int```
"""
counter = count()
deque(zip(iterable, counter), maxlen=0)
return next(counter)
def begin_matches_end(s):
"""
Checks if the begin matches the end of the string
:param s: Input string of length > 0
:type s: ```str```
:return: Whether the beginning matches the end (checks first match chars
:rtype: ```bool```
"""
return (count_iter_items(takewhile(partial(eq, s[0]), s)) ==
count_iter_items(takewhile(partial(eq, s[0]), s[::-1])))
Solution with replaced parts of the string
s = 'lolololol'
t = 0
t += s.count('lol')
s = s.replace('lol', 'lo1')
t += s.count('1ol')
print("Number of times lol occurs is:", t)
Answer is 4.
If you want to count permutation counts of length 5 (adjust if wanted for different lengths):
def MerCount(s):
for i in xrange(len(s)-4):
d[s[i:i+5]] += 1
return d