I'm using Spyder IDE and I'm trying to plot some locations using basemap. When I plug in some lat/lon coordinates, I get exceedingly large xy values (Which will not appear on the plot). I have consulted various sample codes and cannot figure out what is wrong...
For example:
from mpl_toolkits.basemap import Basemap
m = Basemap(projection='merc',llcrnrlat=35,urcrnrlat=40,\
llcrnrlon=-125,urcrnrlon=-120,resolution='c')
x,y = m(37.5,-122.5)
print(x,y)
yields:
(18069167.07126069, 1e+30)
Any suggestions?
I think you have your longitude and latitude the wrong way round. The x axis would be equivalent to longitude.
x,y = m(-122.5, 37.5)
Related
I would like to draw a line connecting two points of equal latitude on a basemap instance, using a conical map projection (i.e. where latitudes are not straight lines).
Irrespective of whether I use m.drawgreatcircle or m.plot, the resulting line is a straight (-I think...?) line between the two points, as opposed to a line that goes along a constant latitude. Does anybody know how to solve this problem? Some example code and the resulting image is below. I would dearly love that yellow dashed line to run along the 55N line.
import matplotlib.pyplot as plt
from mpl_toolkits.basemap import Basemap
#set up the map
m = Basemap(resolution='l',area_thresh=1000.,projection='lcc',\
lat_1=50.,lat_2=60,lat_0=57.5,lon_0=-92.5,\
width=6000000,height=4500000)
#add some basic map features
m.drawmeridians(np.arange(-155,-5,10),\
labels=[0,0,0,1],fontsize=8,linewidth=0.5)
m.drawparallels(np.arange(30,85,5),\
labels=[1,0,0,0],fontsize=8,linewidth=0.5)
m.drawcoastlines(linewidth=0.5)
m.drawcountries(linewidth=1)
m.drawstates(linewidth=0.3)
#plot some topography data
m.etopo()
#draw a line between two points of the same latitude
m.drawgreatcircle(-120,55,-65,55,linewidth=1.5,\
color='yellow',linestyle='--')
Apologies if I am missing something extremely simple...!
drawgreatcicle is apparently not working correctly on a lcc projection map.
You can always just create a line yourself instead of relying on this helper function. To this end, create coordinates along the line, project them and call plot.
lon = np.linspace(-120,-65)
lat = np.linspace(55,55)
x,y = m(lon,lat)
m.plot(x,y, linewidth=1.5, color='yellow',linestyle='--')
This question is in regards to plotting some data I have that uses the Lambert Conformal (LCC) CRS. While these questions specifically pertain to plotting LCC data in multiple projections, it also applies to the use of cartopy in general in that I would like to better understand the logic/process of plotting using cartopy.
Below are some code examples of what I am trying to do. The first example is simply plotting some LCC data. The data I used are available in the link here.
import cartopy.crs as ccrs
import cartopy.feature as cf
import matplotlib.pyplot as plt
import numpy as np
proj = ccrs.LambertConformal(central_latitude = 25,
central_longitude = 265,
standard_parallels = (25, 25))
# Data and coordinates (from download link above)
with np.load('nam_218_20120414_1200_006.npz') as nam:
dat = nam['dpc']
lat = nam['lat']
lon = nam['lon']
ax = plt.axes(projection = proj)
ax.pcolormesh(lon, lat, dat, transform = ccrs.PlateCarree())
ax.add_feature(cf.NaturalEarthFeature(
category='cultural',
name='admin_1_states_provinces_lines',
scale='50m',
facecolor='none'))
ax.coastlines('50m')
ax.add_feature(cf.BORDERS)
plt.show()
The plot produced can be seen here:
US Dewpoints on LCC Map
My first confusion when using cartopy was why I always have to transform to PlateCarree when plotting? My initial thought was the transform keyword of the pcolormesh call needed the LCC projection information and not PlateCarree.
Next, if I want to plot my LCC data in another projection, e.g. Orthographic, would I go about doing so like below?
# First, transform from LCC to Orthographic
transform = proj.transform_points(ccrs.Orthographic(265,25), lon, lat)
x = transform[..., 0]
y = transform[..., 1]
ax = plt.axes(projection = ccrs.Orthographic(265,25))
ax.pcolormesh(x, y, dat, transform = ccrs.PlateCarree())
ax.add_feature(cf.NaturalEarthFeature(
category='cultural',
name='admin_1_states_provinces_lines',
scale='50m',
facecolor='none'))
ax.coastlines('50m')
ax.add_feature(cf.BORDERS)
ax.set_global()
The plot produced can be seen here:
US Dewpoints on Orthographic Map
I think the Orthographic map looks right, but I'd like to be sure that I understand the process of re-projection with cartopy correctly.
In summary, I would like to know the following things:
Do you always have to transform to PlateCarree when plotting? Why or why not?
Does re-projecting simply require a call to the transform_points method or are there other steps involved?
Update 1
Based on the answer from #swatchai, it seems as though the answer to my Question 2 is that transform_points is not required. One can simply use the transform keyword argument in many matplotlib plotting methods. This is what I thought originally. However, skipping the transform_points has not worked for me. See example below:
ax = plt.axes(projection = ccrs.Orthographic(265,25))
ax.pcolormesh(lon, lat, dat, transform = proj)
ax.add_feature(cf.NaturalEarthFeature(
category='cultural',
name='admin_1_states_provinces_lines',
scale='50m',
facecolor='none'))
ax.coastlines('50m')
ax.add_feature(cf.BORDERS)
ax.set_global()
Which produces this plot:
Orthographic Plot Without transform_points Step
The problem appears to be that the lat and lon input does not get transformed into the grid coordinates so they only get plotted in an extremely small area of the plot. So, to expand upon Question 2, if you are supposed to skip transform_points is there a bug in cartopy's plotting methods based on my above example? Or am I still missing a step?
An important distinction needs to be made between geographic and projected (or grid) coordinates. A more detailed description of those can be found here. The important thing, and what helps to answer Question 1, is that latitude and longitude are geographic coordinates whereas points that have units in meters are projected coordinates.
The numerical weather model where the example data came from uses the Lambert Conformal projection in its calculations (more here). However, the coordinates that get output are latitude and longitude. If you are inexperienced with spatial data, you can end up thinking that the lat/lon pairs are LCC projected coordinates when they are in fact geogrphic coordinates; the LCC stuff is used during model integration.
To answer Question 1, no, you do not always have to use PlateCarree as the source CRS. You do, however, always use PlateCarree for latitude and longitude data (which was the case here). This way cartopy will correctly transform your lat/lon values into projected coordinates (in meters) and be able to easily transform your data to other projections during plotting. This issue is ultimately the reason for the seemingly blank plot in Update 1. By saying the source data have LCC projected coordinates in transform, cartopy took the lat/lon input and interpreted them as having units of meters. The data did get plotted, but the extent was so small that it was impossible to see them without changing the plot extent to be the same as the data.
With regard to Question 2, no, using transform_points is not a requirement. cartopy was set up in such a way to make is easy to plot in multiple projections with minimal intermediary steps. As #swatchai mentioned, sometimes you may want to use the actual projected coordinates and using the transform_points method will allow you to do that. When transform_points was used to produce the second plot in the original post it essentially was manually doing what would have automatically been done had the input coordinates been handled properly with PlateCarree in transform.
Finally, an important clarification was made by #ajdawson with regard to how to use projection and transform when plotting. Once you understand what you have for source coordinates, this information is also useful. The comment is quoted below:
In general, projection tells cartopy what the drawn map should look like, and transform tells cartopy what coordinate system your data is represented in. You can set projection to any projection you like, but transform needs to match whatever coordinate system your data uses.
In Cartopy, ccrs.PlateCarree() is the most basic map projection, sometimes called un-projected projection, that is, a geo position (lat,long) in degrees -> becomes grid values y=lat; x=long on a PlateCarree map.
This snippet code:
import cartopy.crs as ccrs
axm = plt.axes( projection = ccrs.xxxx() )
creates an axis axm for plotting map in xxxx projection. When you plot data on axm, the default coordinates are grid (x,y) of that projection (usually in meters unit). That is why you need transform=ccrs.PlateCarree() to declare that your input (x,y) are indeed in (long,lat) degrees, or in other words, in (x,y) of PlateCarree grid coordinates.
If your target projection is Orthographic while data is LambertConformal,
ax = plt.axes(projection = ccrs.Orthographic(265,25))
lccproj = ccrs.LambertConformal(central_latitude = 25,
central_longitude = 265,
standard_parallels = (25, 25))
You can plot the data with
ax.pcolormesh(x, y, dat, transform = lccproj)
No need to use transform_points() at all when you do the plotting. But it is useful when you want access to the transformed coordinates in some situation.
I am trying to make a plot of galactic coordinates using python. Let's say that I have this data:
data = [(0.261, -7.123, 13.03, 'Unidentified'), (-0.326, 77, 13.03, 'Galaxies')]
Where each tuple is of the form (ra, dec, flux, type).
I am asked to use astropy + matplotlib, so:
c = SkyCoord(ra = ra*u.degree, dec = dec*u.degree)
galactic = c.galactic
Here is where my problem arises, I am using this code:
from mpl_toolkits.basemap import Basemap
import numpy as np
import matplotlib.pyplot as plt
# lon_0 is central longitude of projection.
# resolution = 'c' means use crude resolution coastlines.
m = Basemap(projection='hammer',lon_0=0,resolution='c')
m.drawcoastlines()
m.fillcontinents(color='coral',lake_color='aqua')
# draw parallels and meridians.
m.drawparallels(np.arange(-90.,120.,30.))
m.drawmeridians(np.arange(0.,420.,60.))
m.drawmapboundary(fill_color='aqua')
plt.title("Hammer Projection")
plt.show()
However I can't plot the data in galactic coordinates and I don't know why. Also I need that every point is of a different color depending on the type, and of different size depending on the value of flux. I need to achieve something like this (I am kind of new to python and I have never used astropy, I have not found good examples):
Hope someone could help.
Look at the examples at the bottom of http://www.astropy.org/astropy-tutorials/plot-catalog.html. A common problem I run into when plotting Galactic coordinates is that you want to plot from -180 to +180, but the default is to give coordinates from 0 to 360. You can change this with wrap_at, e.g.:
plot(galactic.l.wrap_at(180*u.deg), galactic.b.wrap_at(180*u.deg))
I would like to plot data on a grid (which is in LCC projection) with Cartopy, so that the data fills the entire axis (and also axes, but that is not the issue here).
To make it clearer, here is what I do with Cartopy:
import cartopy.crs as ccrs
import numpy as np
import pyproj as p4
from mpl_toolkits.basemap import Basemap
lalo = #read latitudes and longitudes of my grid defined in a special LCC projection (below)
lat = np.reshape(lalo[:,1],(ny,nx))
lon = np.reshape(lalo[:,0],(ny,nx))
minlat = lat[0,0]
maxlat = lat[-1,-1]
minlon = lon[0,0]
maxlon = lon[-1,-1]
Z = np.ones((ny,nx)) #some data
#grid definition for cartopy:
myproj = ccrs.LambertConformal(central_longitude=13.3333, central_latitude=47.5,
false_easting=400000, false_northing=400000,
secant_latitudes=(46, 49))
fig = plt.figure()
ax = plt.axes(projection = myproj)
plt.contourf(lon, lat, Z)#, transform=myproj)
#no difference with transform option as lon,lat are already in myproj projection
The result is an image which does not fill the entire axis, but looks like this:
When using Basemap like this:
a=6377397.155
rf=299.1528128
b= a*(1 - 1/rf)
m = Basemap(projection='lcc', resolution='h', rsphere=(a,b),
llcrnrlon=minlon,llcrnrlat=minlat,urcrnrlon=maxlon,urcrnrlat=maxlat,
llcrnrx=400000, llcrnry=400000,
lat_1=46, lat_2=49, lat_0=47.5, lon_0=13.3333, ax=ax)
x,y = m(lon,lat)
m.contourf(x,y,Z)
I get the following (desired) image:
And finally, when using proj4 to convert lon and lat using this definition p4.Proj('+proj=lcc +lat_1=46N +lat_2=49N +lat_0=47.5N +lon_0=13.3333 +ellps=bessel +x_0=400000 +y_0=400000') I again get the desired image:
Is there any possibility to achieve this in cartopy as well?
In other words, I would like to have a plot where the data shows up in a perfect rectangle, and the background map is distorted accordingly, i.e. something like the opposite of this example (cannot install iris package, otherwise I would have tried with this example)
I have tried a few things like:
building a custom class for my projection as done here, just to be sure that the parameters are all set correctly (as in my proj4 definition).
played around with aspect ratios, but they only affect the axes not the axis,
and a few more things.
Any help is greatly appreciated!
The important piece of information that is missing here is that your data is in lats and lons, not in the Cartesian transverse Mercator coordinate system. As a result you will need to use a Cartesian coordinate system which speaks lats and lons (spherical contouring has not been implemented at this point). Such a coordinate system exists in the form of the PlateCarree crs - so simply passing this as the transform of the contoured data should put your data in the right place.
plt.contourf(lon, lat, Z, transform=ccrs.PlateCarree())
This really highlights the fact that the default coordinate system of your data, is the same as that of the map, which in most cases is not longitudes and latitudes - the only way to change the CRS of your data is by passing the transform keyword.
HTH
I'm trying to wrap my head around matplotlib's basemap API. What I'd like to do is plot latitude and longitude data of a very small area (couple of km in either direction) on a cylindrical projection.
The problem is, I'm unable to understand how llcrnrlon, llcrnrlat, urcrnrlon and urcrnrlat parameters to the Basemap constructor work.
As far as I understand it, the llcrnrlon is the west-most longitude and llcrnrlat is the south-most latitude and urcrnrlon and urcrnrlat are the east-most and north-most longitude and latitude respectively.
In all these cases, given a set of coordinates, the (numerically) smallest longitudes are the west-most and the smallest latitudes are the south-most and vice-versa. Is this understanding correct?
I'm able to get the plot working by setting xlim and ylim on the underlying Axes object, but using the same values in the basemap constructor seem to push my data off the plot.
EDIT: See code below for a reproduction of the problem:
from matplotlib import pyplot
from mpl_toolkits import basemap
import random
lat_bounds = 52.063443, 52.072587
long_bounds = 1.010408, 1.024502
ax1 = pyplot.subplot(121)
ax2 = pyplot.subplot(122)
ax1.set_title('With ll* rr*')
ax2.set_title('With default values')
my_map1 = basemap.Basemap(projection='cyl', llcrnrlat=lat_bounds[0], llcrnrlon=long_bounds[0],
urcrnrlat=lat_bounds[1], urcrnrlon=long_bounds[1], ax=ax1)
my_map2 = basemap.Basemap(projection='cyl', ax=ax2)
data_lats = [random.uniform(*lat_bounds) for i in xrange(50)]
data_lons = [random.uniform(*long_bounds) for i in xrange(50)]
my_map1.plot(data_lats, data_lons)
my_map2.plot(data_lats, data_lons)
pyplot.show()
In the figures below, the right hand side image is made by using Basemap(projection='cyl') and the left hand side image is made by using Basemap(projection='cyl', llcrnrlat=lat_bounds[0], llcrnrlon=long_bounds[0], urcrnrlat=lat_bounds[1], urcrnrlon=long_bounds[1], ax=ax1)
Notice the dot in the right hand side image, which when zoomed using the matplotlib toolbar becomes the second image.
The problem in your example code is that you are passing the arguments to Basemap.plot() the wrong way around. The arguments to Basemap.plot are exactly the same as those to matplotlib.pyplot.plot, i.e.:
plot(x,y,*args,**kwargs)
In cylindrical coordinates, longitude is the x-coordinate and latitude is the y-coordinate, so you should do mymap1.plot(data_lons, data_lats). The reason it seemed to work in your second example is that longitudes of ~52 and latitudes of ~1 make sense. The points were plotted, but somewhere far away from your domain. If you panned the window of ax1 far enough, you would have seen them (which is the same as doing ax.set_xlim(lat_bounds) and ax.set_ylim(lon_bounds)).