Error trying to generate a jupyter notebook config file - python

I want to change some settings in the jupyter notebook interface --- e.g., display line numbers, display right margin guide --- so that they are always displayed.
Since my ~/.jupyter/ dir contains only one file (migrated) and no /nbconfig/ dir or notebook.json file, I ran jupyter notebook --generate-config at the prompt to create a new config file. This produced a couple errors related to sqlite3 and pysqlite2.
I checked my installed packages and I do have sqlite 3.26.0 installed, though not pysqlite2.
From the error message I'm not sure if the second error related to pysqlite2 is raised only b/c sqlite3 wasn't found, or if I need to install pysqlite2. If it's required for such a basic operation as creating a config file I'm wondering why it wouldn't be part of the Anaconda full install I did a few weeks ago.
I'm on Windows 10 running Anaconda 2018.12, anaconda-client 1.7.2, jupyter notebook server 5.7.4-f6790e4 on Python 3.7.1 (default, Dec 10 2018, 22:54:23) [MSC v.1915 64 bit (AMD64)], IPython 7.2.0.
Here's the commands and full output in case seeing other installed packages is helpful:
k#DESKTOP-VAQRJL8 MINGW64 ~ (master)
$ jupyter notebook --generate-config
Traceback (most recent call last):
File "C:\Users\karls\Anaconda3\lib\site-packages\notebook\services\sessions\sessionmanager.py", line 10, in <module>
import sqlite3
File "C:\Users\karls\Anaconda3\lib\sqlite3\__init__.py", line 23, in <module>
from sqlite3.dbapi2 import *
File "C:\Users\karls\Anaconda3\lib\sqlite3\dbapi2.py", line 27, in <module>
from _sqlite3 import *
ImportError: DLL load failed: The specified procedure could not be found.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Users\karls\Anaconda3\Scripts\jupyter-notebook-script.py", line 6, in <module>
from notebook.notebookapp import main
File "C:\Users\karls\Anaconda3\lib\site-packages\notebook\notebookapp.py", line 86, in <module>
from .services.sessions.sessionmanager import SessionManager
File "C:\Users\karls\Anaconda3\lib\site-packages\notebook\services\sessions\sessionmanager.py", line 13, in <module>
from pysqlite2 import dbapi2 as sqlite3
ModuleNotFoundError: No module named 'pysqlite2'
k#DESKTOP-VAQRJL8 MINGW64 ~ (master)
$ conda list
# packages in environment at C:\Users\karls\Anaconda3:
#
# Name Version Build Channel
_ipyw_jlab_nb_ext_conf 0.1.0 py37_0
alabaster 0.7.12 py37_0
anaconda 2018.12 py37_0
anaconda-client 1.7.2 py37_0
anaconda-navigator 1.9.6 py37_0
anaconda-project 0.8.2 py37_0
asn1crypto 0.24.0 py37_0
astroid 2.1.0 py37_0
astropy 3.1 py37he774522_0
atomicwrites 1.2.1 py37_0
attrs 18.2.0 py37h28b3542_0
babel 2.6.0 py37_0
backcall 0.1.0 py37_0
backports 1.0 py37_1
backports.os 0.1.1 py37_0
backports.shutil_get_terminal_size 1.0.0 py37_2
bcrypt 3.1.6 pypi_0 pypi
beautifulsoup4 4.6.3 py37_0
bitarray 0.8.3 py37hfa6e2cd_0
bkcharts 0.2 py37_0
blas 1.0 mkl
blaze 0.11.3 py37_0
bleach 3.0.2 py37_0
blosc 1.14.4 he51fdeb_0
bokeh 1.0.2 py37_0
boto 2.49.0 py37_0
bottleneck 1.2.1 py37h452e1ab_1
bzip2 1.0.6 hfa6e2cd_5
ca-certificates 2018.03.07 0
certifi 2018.11.29 py37_0
cffi 1.11.5 py37h74b6da3_1
chardet 3.0.4 py37_1
click 7.0 py37_0
cloudpickle 0.6.1 py37_0
clyent 1.2.2 py37_1
colorama 0.4.1 py37_0
comtypes 1.1.7 py37_0
conda 4.6.3 py37_0
conda-build 3.17.6 py37_0
conda-env 2.6.0 1
conda-verify 3.1.1 py37_0
console_shortcut 0.1.1 3
contextlib2 0.5.5 py37_0
cryptography 2.4.2 py37h7a1dbc1_0
curl 7.63.0 h2a8f88b_1000
cycler 0.10.0 py37_0
cython 0.29.2 py37ha925a31_0
cytoolz 0.9.0.1 py37hfa6e2cd_1
dask 1.0.0 py37_0
dask-core 1.0.0 py37_0
datashape 0.5.4 py37_1
decorator 4.3.0 py37_0
defusedxml 0.5.0 py37_1
distributed 1.25.1 py37_0
dnspython 1.15.0 pypi_0 pypi
docutils 0.14 py37_0
entrypoints 0.2.3 py37_2
et_xmlfile 1.0.1 py37_0
faker 0.8.13 pypi_0 pypi
fastcache 1.0.2 py37hfa6e2cd_2
filelock 3.0.10 py37_0
flask 0.12.4 pypi_0 pypi
flask-bcrypt 0.7.1 pypi_0 pypi
flask-cors 3.0.3 pypi_0 pypi
flask-jwt-extended 3.7.0 pypi_0 pypi
flask-login 0.4.0 pypi_0 pypi
freetype 2.9.1 ha9979f8_1
future 0.17.1 py37_0
get_terminal_size 1.0.0 h38e98db_0
gevent 1.3.7 py37he774522_1
glob2 0.6 py37_1
greenlet 0.4.15 py37hfa6e2cd_0
h5py 2.8.0 py37h3bdd7fb_2
hdf5 1.10.2 hac2f561_1
heapdict 1.0.0 py37_2
html5lib 1.0.1 py37_0
icc_rt 2019.0.0 h0cc432a_1
icu 58.2 ha66f8fd_1
idna 2.8 py37_0
imageio 2.4.1 py37_0
imagesize 1.1.0 py37_0
importlib_metadata 0.6 py37_0
intel-openmp 2019.1 144
ipykernel 5.1.0 py37h39e3cac_0
ipython 7.2.0 py37h39e3cac_0
ipython_genutils 0.2.0 py37_0
ipywidgets 7.4.2 py37_0
isort 4.3.4 py37_0
itsdangerous 1.1.0 py37_0
jdcal 1.4 py37_0
jedi 0.13.2 py37_0
jinja2 2.10 py37_0
jpeg 9b hb83a4c4_2
jsonschema 2.6.0 py37_0
jupyter 1.0.0 py37_7
jupyter-client 5.2.3 pypi_0 pypi
jupyter-console 6.0.0 pypi_0 pypi
jupyter_core 4.4.0 py37_0
jupyterlab 0.35.3 py37_0
jupyterlab_server 0.2.0 py37_0
keyring 17.0.0 py37_0
kiwisolver 1.0.1 py37h6538335_0
krb5 1.16.1 hc04afaa_7
lazy-object-proxy 1.3.1 py37hfa6e2cd_2
libarchive 3.3.3 h0643e63_5
libcurl 7.63.0 h2a8f88b_1000
libiconv 1.15 h1df5818_7
libpng 1.6.35 h2a8f88b_0
libsodium 1.0.16 h9d3ae62_0
libssh2 1.8.0 h7a1dbc1_4
libtiff 4.0.9 h36446d0_2
libxml2 2.9.8 hadb2253_1
libxslt 1.1.32 hf6f1972_0
llvmlite 0.26.0 py37ha925a31_0
locket 0.2.0 py37_1
lxml 4.2.5 py37hef2cd61_0
lz4-c 1.8.1.2 h2fa13f4_0
lzo 2.10 h6df0209_2
m2w64-gcc-libgfortran 5.3.0 6
m2w64-gcc-libs 5.3.0 7
m2w64-gcc-libs-core 5.3.0 7
m2w64-gmp 6.1.0 2
m2w64-libwinpthread-git 5.0.0.4634.697f757 2
markupsafe 1.1.0 py37he774522_0
matplotlib 3.0.2 py37hc8f65d3_0
mccabe 0.6.1 py37_1
menuinst 1.4.14 py37hfa6e2cd_0
mistune 0.8.4 py37he774522_0
mkl 2019.1 144
mkl-service 1.1.2 py37hb782905_5
mkl_fft 1.0.6 py37h6288b17_0
mkl_random 1.0.2 py37h343c172_0
more-itertools 4.3.0 py37_0
mpmath 1.1.0 py37_0
msgpack-python 0.5.6 py37he980bc4_1
msys2-conda-epoch 20160418 1
multipledispatch 0.6.0 py37_0
navigator-updater 0.2.1 py37_0
nbconvert 5.4.0 py37_1
nbformat 4.4.0 py37_0
networkx 2.2 py37_1
nltk 3.4 py37_1
nose 1.3.7 py37_2
notebook 5.7.4 py37_0
numba 0.41.0 py37hf9181ef_0
numexpr 2.6.8 py37hdce8814_0
numpy 1.15.4 py37h19fb1c0_0
numpy-base 1.15.4 py37hc3f5095_0
numpydoc 0.8.0 py37_0
objgraph 3.4.0 pypi_0 pypi
odo 0.5.1 py37_0
olefile 0.46 py37_0
openpyxl 2.5.12 py37_0
openssl 1.1.1a he774522_0
packaging 18.0 py37_0
pandas 0.23.4 py37h830ac7b_0
pandoc 1.19.2.1 hb2460c7_1
pandocfilters 1.4.2 py37_1
parso 0.3.1 py37_0
partd 0.3.9 py37_0
path.py 11.5.0 py37_0
pathlib2 2.3.3 py37_0
patsy 0.5.1 py37_0
pep8 1.7.1 py37_0
pickleshare 0.7.5 py37_0
pillow 5.3.0 py37hdc69c19_0
pip 18.1 py37_0
pkginfo 1.4.2 py37_1
pluggy 0.8.0 py37_0
ply 3.11 py37_0
prometheus_client 0.5.0 py37_0
prompt-toolkit 2.0.8 pypi_0 pypi
psutil 5.4.8 py37he774522_0
py 1.7.0 py37_0
pycodestyle 2.4.0 py37_0
pycosat 0.6.3 py37hfa6e2cd_0
pycparser 2.19 py37_0
pycrypto 2.6.1 py37hfa6e2cd_9
pycurl 7.43.0.2 py37h7a1dbc1_0
pyflakes 2.0.0 py37_0
pygments 2.3.1 py37_0
pyjwt 1.7.1 pypi_0 pypi
pylint 2.2.2 py37_0
pymongo 3.7.0 pypi_0 pypi
pyodbc 4.0.25 py37ha925a31_0
pyopenssl 18.0.0 py37_0
pyparsing 2.3.0 py37_0
pyqt 5.9.2 py37h6538335_2
pysocks 1.6.8 py37_0
pytables 3.4.4 py37he6f6034_0
pytest 4.0.2 py37_0
pytest-arraydiff 0.3 py37h39e3cac_0
pytest-astropy 0.5.0 py37_0
pytest-doctestplus 0.2.0 py37_0
pytest-flask 0.10.0 pypi_0 pypi
pytest-openfiles 0.3.1 py37_0
pytest-remotedata 0.3.1 py37_0
python 3.7.1 h8c8aaf0_6
python-dateutil 2.7.5 py37_0
python-graphviz 0.10.1 pypi_0 pypi
python-libarchive-c 2.8 py37_6
pytz 2018.7 py37_0
pywavelets 1.0.1 py37h8c2d366_0
pywin32 223 py37hfa6e2cd_1
pywinpty 0.5.5 py37_1000
pyyaml 3.13 py37hfa6e2cd_0
pyzmq 17.1.2 pypi_0 pypi
qt 5.9.7 vc14h73c81de_0 [vc14]
qtawesome 0.5.3 py37_0
qtconsole 4.4.3 py37_0
qtpy 1.5.2 py37_0
requests 2.21.0 py37_0
rope 0.11.0 py37_0
ruamel_yaml 0.15.46 py37hfa6e2cd_0
scikit-image 0.14.1 py37ha925a31_0
scikit-learn 0.20.1 py37h343c172_0
scipy 1.1.0 py37h29ff71c_2
seaborn 0.9.0 py37_0
send2trash 1.5.0 py37_0
setuptools 40.6.3 py37_0
simplegeneric 0.8.1 py37_2
singledispatch 3.4.0.3 py37_0
sip 4.19.8 py37h6538335_0
six 1.12.0 py37_0
snappy 1.1.7 h777316e_3
snowballstemmer 1.2.1 py37_0
sortedcollections 1.0.1 py37_0
sortedcontainers 2.1.0 py37_0
sphinx 1.8.2 py37_0
sphinxcontrib 1.0 py37_1
sphinxcontrib-websupport 1.1.0 py37_1
spyder 3.3.2 py37_0
spyder-kernels 0.3.0 py37_0
sqlalchemy 1.2.15 py37he774522_0
sqlite 3.26.0 he774522_0
statsmodels 0.9.0 py37h452e1ab_0
sympy 1.3 py37_0
tblib 1.3.2 py37_0
terminado 0.8.1 py37_1
testpath 0.4.2 py37_0
text-unidecode 1.2 pypi_0 pypi
tk 8.6.8 hfa6e2cd_0
toolz 0.9.0 py37_0
tornado 5.1.1 py37hfa6e2cd_0
tqdm 4.28.1 py37h28b3542_0
traitlets 4.3.2 py37_0
unicodecsv 0.14.1 py37_0
urllib3 1.24.1 py37_0
vc 14.1 h0510ff6_4
vs2015_runtime 14.15.26706 h3a45250_0
wcwidth 0.1.7 py37_0
webencodings 0.5.1 py37_1
werkzeug 0.14.1 py37_0
wheel 0.32.3 py37_0
widgetsnbextension 3.4.2 py37_0
win_inet_pton 1.0.1 py37_1
win_unicode_console 0.5 py37_0
wincertstore 0.2 py37_0
winpty 0.4.3 4
wrapt 1.10.11 py37hfa6e2cd_2
xdot 1.0 pypi_0 pypi
xlrd 1.2.0 py37_0
xlsxwriter 1.1.2 py37_0
xlwings 0.15.1 py37_0
xlwt 1.3.0 py37_0
xz 5.2.4 h2fa13f4_4
yaml 0.1.7 hc54c509_2
zeromq 4.2.5 he025d50_1
zict 0.1.3 py37_0
zlib 1.2.11 h62dcd97_3
zstd 1.3.7 h508b16e_0

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# packages in environment at C:\Program Files\Anaconda3:
#
# Name Version Build Channel
_ipyw_jlab_nb_ext_conf 0.1.0 py37_0
alabaster 0.7.12 py37_0
anaconda 2019.07 py37_0
anaconda-client 1.7.2 py37_0
anaconda-navigator 1.9.7 py37_0
anaconda-project 0.8.3 py_0
asn1crypto 0.24.0 py37_0
astroid 2.2.5 py37_0
astropy 3.2.1 py37he774522_0
atomicwrites 1.3.0 py37_1
attrs 19.1.0 py37_1
babel 2.7.0 py_0
backcall 0.1.0 py37_0
backports 1.0 py_2
backports.functools_lru_cache 1.5 py_2
backports.os 0.1.1 py37_0
backports.shutil_get_terminal_size 1.0.0 py37_2
backports.tempfile 1.0 py_1
backports.weakref 1.0.post1 py_1
beautifulsoup4 4.7.1 py37_1
bitarray 0.9.3 py37he774522_0
bkcharts 0.2 py37_0
blas 1.0 mkl
bleach 3.1.0 py37_0
blosc 1.16.3 h7bd577a_0
bokeh 1.2.0 py37_0
boto 2.49.0 py37_0
bottleneck 1.2.1 py37h452e1ab_1
bzip2 1.0.8 he774522_0
ca-certificates 2019.5.15 0
certifi 2019.6.16 py37_0
cffi 1.12.3 py37h7a1dbc1_0
chardet 3.0.4 py37_1
click 7.0 py37_0
cloudpickle 1.2.1 py_0
clyent 1.2.2 py37_1
colorama 0.4.1 py37_0
comtypes 1.1.7 py37_0
conda 4.7.10 py37_0
conda-build 3.18.8 py37_0
conda-env 2.6.0 1
conda-package-handling 1.3.11 py37_0
conda-verify 3.4.2 py_1
console_shortcut 0.1.1 3
contextlib2 0.5.5 py37_0
cryptography 2.7 py37h7a1dbc1_0
curl 7.65.2 h2a8f88b_0
cycler 0.10.0 py37_0
cython 0.29.12 py37ha925a31_0
cytoolz 0.10.0 py37he774522_0
dask 2.1.0 py_0
dask-core 2.1.0 py_0
decorator 4.4.0 py37_1
defusedxml 0.6.0 py_0
distributed 2.1.0 py_0
docutils 0.14 py37_0
entrypoints 0.3 py37_0
et_xmlfile 1.0.1 py37_0
fastcache 1.1.0 py37he774522_0
filelock 3.0.12 py_0
flask 1.1.1 py_0
freetype 2.9.1 ha9979f8_1
future 0.17.1 py37_0
get_terminal_size 1.0.0 h38e98db_0
gevent 1.4.0 py37he774522_0
glob2 0.7 py_0
greenlet 0.4.15 py37hfa6e2cd_0
h5py 2.9.0 py37h5e291fa_0
hdf5 1.10.4 h7ebc959_0
heapdict 1.0.0 py37_2
html5lib 1.0.1 py37_0
icc_rt 2019.0.0 h0cc432a_1
icu 58.2 ha66f8fd_1
idna 2.8 py37_0
imageio 2.5.0 py37_0
imagesize 1.1.0 py37_0
importlib_metadata 0.17 py37_1
intel-openmp 2019.4 245
ipykernel 5.1.1 py37h39e3cac_0
ipython 7.6.1 py37h39e3cac_0
ipython_genutils 0.2.0 py37_0
ipywidgets 7.5.0 py_0
isort 4.3.21 py37_0
itsdangerous 1.1.0 py37_0
jdcal 1.4.1 py_0
jedi 0.13.3 py37_0
jinja2 2.10.1 py37_0
joblib 0.13.2 py37_0
jpeg 9b hb83a4c4_2
json5 0.8.4 py_0
jsonschema 3.0.1 py37_0
jupyter 1.0.0 py37_7
jupyter_client 5.3.1 py_0
jupyter_console 6.0.0 py37_0
jupyter_core 4.5.0 py_0
jupyterlab 1.0.2 py37hf63ae98_0
jupyterlab_server 1.0.0 py_0
keyring 18.0.0 py37_0
kiwisolver 1.1.0 py37ha925a31_0
krb5 1.16.1 hc04afaa_7
lazy-object-proxy 1.4.1 py37he774522_0
libarchive 3.3.3 h0643e63_5
libcurl 7.65.2 h2a8f88b_0
libiconv 1.15 h1df5818_7
liblief 0.9.0 ha925a31_2
libpng 1.6.37 h2a8f88b_0
libsodium 1.0.16 h9d3ae62_0
libssh2 1.8.2 h7a1dbc1_0
libtiff 4.0.10 hb898794_2
libxml2 2.9.9 h464c3ec_0
libxslt 1.1.33 h579f668_0
llvmlite 0.29.0 py37ha925a31_0
locket 0.2.0 py37_1
lxml 4.3.4 py37h1350720_0
lz4-c 1.8.1.2 h2fa13f4_0
lzo 2.10 h6df0209_2
m2w64-gcc-libgfortran 5.3.0 6
m2w64-gcc-libs 5.3.0 7
m2w64-gcc-libs-core 5.3.0 7
m2w64-gmp 6.1.0 2
m2w64-libwinpthread-git 5.0.0.4634.697f757 2
markupsafe 1.1.1 py37he774522_0
matlabengineforpython R2018a pypi_0 pypi
matplotlib 3.1.0 py37hc8f65d3_0
mccabe 0.6.1 py37_1
menuinst 1.4.16 py37he774522_0
mistune 0.8.4 py37he774522_0
mkl 2019.4 245
mkl-service 2.0.2 py37he774522_0
mkl_fft 1.0.12 py37h14836fe_0
mkl_random 1.0.2 py37h343c172_0
mock 3.0.5 py37_0
more-itertools 7.0.0 py37_0
mpmath 1.1.0 py37_0
msgpack-python 0.6.1 py37h74a9793_1
msys2-conda-epoch 20160418 1
multipledispatch 0.6.0 py37_0
navigator-updater 0.2.1 py37_0
nbconvert 5.5.0 py_0
nbformat 4.4.0 py37_0
networkx 2.3 py_0
nltk 3.4.4 py37_0
nose 1.3.7 py37_2
notebook 6.0.0 py37_0
numba 0.44.1 py37hf9181ef_0
numexpr 2.6.9 py37hdce8814_0
numpy 1.16.4 py37h19fb1c0_0
numpy-base 1.16.4 py37hc3f5095_0
numpydoc 0.9.1 py_0
olefile 0.46 py37_0
openpyxl 2.6.2 py_0
openssl 1.1.1c he774522_1
packaging 19.0 py37_0
pandas 0.24.2 py37ha925a31_0
pandoc 2.2.3.2 0
pandocfilters 1.4.2 py37_1
parso 0.5.0 py_0
partd 1.0.0 py_0
path.py 12.0.1 py_0
pathlib2 2.3.4 py37_0
patsy 0.5.1 py37_0
pep8 1.7.1 py37_0
pickleshare 0.7.5 py37_0
pillow 6.1.0 py37hdc69c19_0
pip 19.0.3 pypi_0 pypi
pkginfo 1.5.0.1 py37_0
pluggy 0.12.0 py_0
ply 3.11 py37_0
powershell_shortcut 0.0.1 2
prometheus_client 0.7.1 py_0
prompt_toolkit 2.0.9 py37_0
psutil 5.6.3 py37he774522_0
py 1.8.0 py37_0
py-lief 0.9.0 py37ha925a31_2
pycodestyle 2.5.0 py37_0
pycosat 0.6.3 py37hfa6e2cd_0
pycparser 2.19 py37_0
pycrypto 2.6.1 py37hfa6e2cd_9
pycurl 7.43.0.3 py37h7a1dbc1_0
pyflakes 2.1.1 py37_0
pygments 2.4.2 py_0
pylint 2.3.1 py37_0
pyodbc 4.0.26 py37ha925a31_0
pyopenssl 19.0.0 py37_0
pyparsing 2.4.0 py_0
pyqt 5.9.2 py37h6538335_2
pyreadline 2.1 py37_1
pyrsistent 0.14.11 py37he774522_0
pysocks 1.7.0 py37_0
pytables 3.5.2 py37h1da0976_1
pytest 5.0.1 py37_0
pytest-arraydiff 0.3 py37h39e3cac_0
pytest-astropy 0.5.0 py37_0
pytest-doctestplus 0.3.0 py37_0
pytest-openfiles 0.3.2 py37_0
pytest-remotedata 0.3.1 py37_0
python 3.7.3 h8c8aaf0_1
python-dateutil 2.8.0 py37_0
python-libarchive-c 2.8 py37_11
pytz 2019.1 py_0
pywavelets 1.0.3 py37h8c2d366_1
pywin32 223 py37hfa6e2cd_1
pywinpty 0.5.5 py37_1000
pyyaml 5.1.1 py37he774522_0
pyzmq 18.0.0 py37ha925a31_0
qt 5.9.7 vc14h73c81de_0
qtawesome 0.5.7 py37_1
qtconsole 4.5.1 py_0
qtpy 1.8.0 py_0
requests 2.22.0 py37_0
rope 0.14.0 py_0
ruamel_yaml 0.15.46 py37hfa6e2cd_0
scikit-image 0.15.0 py37ha925a31_0
scikit-learn 0.21.2 py37h6288b17_0
scipy 1.2.1 py37h29ff71c_0
seaborn 0.9.0 py37_0
send2trash 1.5.0 py37_0
setuptools 41.0.1 py37_0
simplegeneric 0.8.1 py37_2
singledispatch 3.4.0.3 py37_0
sip 4.19.8 py37h6538335_0
six 1.12.0 py37_0
snappy 1.1.7 h777316e_3
snowballstemmer 1.9.0 py_0
sortedcollections 1.1.2 py37_0
sortedcontainers 2.1.0 py37_0
soupsieve 1.8 py37_0
sphinx 2.1.2 py_0
sphinxcontrib 1.0 py37_1
sphinxcontrib-applehelp 1.0.1 py_0
sphinxcontrib-devhelp 1.0.1 py_0
sphinxcontrib-htmlhelp 1.0.2 py_0
sphinxcontrib-jsmath 1.0.1 py_0
sphinxcontrib-qthelp 1.0.2 py_0
sphinxcontrib-serializinghtml 1.1.3 py_0
sphinxcontrib-websupport 1.1.2 py_0
spyder 3.3.6 py37_0
spyder-kernels 0.5.1 py37_0
sqlalchemy 1.3.5 py37he774522_0
sqlite 3.29.0 he774522_0
statsmodels 0.10.0 py37h8c2d366_0
sympy 1.4 py37_0
tblib 1.4.0 py_0
terminado 0.8.2 py37_0
testpath 0.4.2 py37_0
tk 8.6.8 hfa6e2cd_0
toolz 0.10.0 py_0
tornado 6.0.3 py37he774522_0
tqdm 4.32.1 py_0
traitlets 4.3.2 py37_0
unicodecsv 0.14.1 py37_0
urllib3 1.24.2 py37_0
vc 14.1 h0510ff6_4
vs2015_runtime 14.15.26706 h3a45250_4
wcwidth 0.1.7 py37_0
webencodings 0.5.1 py37_1
werkzeug 0.15.4 py_0
wheel 0.33.4 py37_0
widgetsnbextension 3.5.0 py37_0
win_inet_pton 1.1.0 py37_0
win_unicode_console 0.5 py37_0
wincertstore 0.2 py37_0
winpty 0.4.3 4
wrapt 1.11.2 py37he774522_0
xlrd 1.2.0 py37_0
xlsxwriter 1.1.8 py_0
xlwings 0.15.8 py37_0
xlwt 1.3.0 py37_0
xz 5.2.4 h2fa13f4_4
yaml 0.1.7 hc54c509_2
zeromq 4.3.1 h33f27b4_3
zict 1.0.0 py_0
zipp 0.5.1 py_0
zlib 1.2.11 h62dcd97_3
zstd 1.3.7 h508b16e_0```
Yes, this is normal and most of these are installed in the base environment with a default Anaconda installation. The anaconda package includes many packages,1 which I won't output all here, but you can check those that come with your specific version (anaconda=2019.07=py37_0 for win-64) with:
> conda search --info anaconda/win-64::anaconda=2019.07=py37_0
anaconda 2019.07 py37_0
-----------------------
file name : anaconda-2019.07-py37_0.tar.bz2
name : anaconda
version : 2019.07
build : py37_0
build number: 0
size : 11 KB
license : BSD
subdir : win-64
url : https://conda.anaconda.org/anaconda/win-64/anaconda-2019.07-py37_0.tar.bz2
md5 : c685b18b8c564f802374f5e407785b1f
timestamp : 2019-07-21 19:38:47 UTC
dependencies:
- alabaster 0.7.12 py37_0
- anaconda-client 1.7.2 py37_0
- anaconda-project 0.8.3 py_0
- asn1crypto 0.24.0 py37_0
- astroid 2.2.5 py37_0
- astropy 3.2.1 py37he774522_0
...
- yaml 0.1.7 hc54c509_2
- zeromq 4.3.1 h33f27b4_3
- zict 1.0.0 py_0
- zipp 0.5.1 py_0
- zlib 1.2.11 h62dcd97_3
- zstd 1.3.7 h508b16e_0
Having packages installed in base is not a problem, though many users prefer a minimal base installation, such as Miniconda or a Miniforge variant, which only include what is essential to run the conda (or mamba) CLI.
Mutating2 packages in base is prone to breaking the Conda installation. So, I don't recommend using the base for work (especially not the Python in there), and recommend Mambaforge for fresh installs.
[1] Note that Conda installs packages, not modules. The term modules refers to what Python packages bundle, but many of the Conda packages are non-Python dependencies.
[2] That is, any conda (install|remove|update) -n base operations. Though it definitely is recommended to keep the conda package updated, i.e., conda update -n base conda.

Conda commands (ie: conda env list, sypder, jupyter lab) no longer work after 'conda update conda'

I used 'conda update conda' and I'm now having some problems. I'm on osx. I can no longer open the Anaconda-Navigator App from finder, nor start spyder or jupyter lab from the terminal. Below is the output I get if I try to open jupyter lab from the terminal.
I also added the contents of the base environment as requested.
I tried the command mentioned in this post but had no luck.
Error Running Jupyter Lab/Notebook and Most Conda Commands Following Update
Any help is much appreciated.
(base) Dylans-Mac-mini:~ dylanquinn$ jupyter lab
Traceback (most recent call last):
File "/Users/dylanquinn/opt/anaconda3/lib/python3.7/site-packages/jupyterlab_server/server.py", line 14, in <module>
from notebook.base.handlers import (
File "/Users/dylanquinn/opt/anaconda3/lib/python3.7/site-packages/notebook/base/handlers.py", line 35, in <module>
from notebook.utils import is_hidden, url_path_join, url_is_absolute, url_escape
File "/Users/dylanquinn/opt/anaconda3/lib/python3.7/site-packages/notebook/utils.py", line 10, in <module>
import ctypes
File "/Users/dylanquinn/opt/anaconda3/lib/python3.7/ctypes/__init__.py", line 7, in <module>
from _ctypes import Union, Structure, Array
ImportError: dlopen(/Users/dylanquinn/opt/anaconda3/lib/python3.7/lib-dynload/_ctypes.cpython-37m-darwin.so, 2): Library not loaded: #rpath/libffi.6.dylib
Referenced from: /Users/dylanquinn/opt/anaconda3/lib/python3.7/lib-dynload/_ctypes.cpython-37m-darwin.so
Reason: image not found
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Users/dylanquinn/opt/anaconda3/bin/jupyter-lab", line 6, in <module>
from jupyterlab.labapp import main
File "/Users/dylanquinn/opt/anaconda3/lib/python3.7/site-packages/jupyterlab/labapp.py", line 14, in <module>
from jupyterlab_server import slugify, WORKSPACE_EXTENSION
File "/Users/dylanquinn/opt/anaconda3/lib/python3.7/site-packages/jupyterlab_server/__init__.py", line 4, in <module>
from .app import LabServerApp
File "/Users/dylanquinn/opt/anaconda3/lib/python3.7/site-packages/jupyterlab_server/app.py", line 9, in <module>
from .server import ServerApp
File "/Users/dylanquinn/opt/anaconda3/lib/python3.7/site-packages/jupyterlab_server/server.py", line 26, in <module>
from jupyter_server.base.handlers import ( # noqa
File "/Users/dylanquinn/opt/anaconda3/lib/python3.7/site-packages/jupyter_server/base/handlers.py", line 43, in <module>
from jupyter_server.utils import is_hidden, url_path_join, url_is_absolute, url_escape
File "/Users/dylanquinn/opt/anaconda3/lib/python3.7/site-packages/jupyter_server/utils.py", line 8, in <module>
import ctypes
File "/Users/dylanquinn/opt/anaconda3/lib/python3.7/ctypes/__init__.py", line 7, in <module>
from _ctypes import Union, Structure, Array
ImportError: dlopen(/Users/dylanquinn/opt/anaconda3/lib/python3.7/lib-dynload/_ctypes.cpython-37m-darwin.so, 2): Library not loaded: #rpath/libffi.6.dylib
Referenced from: /Users/dylanquinn/opt/anaconda3/lib/python3.7/lib-dynload/_ctypes.cpython-37m-darwin.so
Reason: image not found
(base) Dylans-Mac-mini:~ dylanquinn$
# packages in environment at /Users/dylanquinn/opt/anaconda3:
#
# Name Version Build Channel
_anaconda_depends 2019.03 py37_0
_ipyw_jlab_nb_ext_conf 0.1.0 py37_0
alabaster 0.7.12 py37_0
anaconda custom py37_1
anaconda-client 1.7.2 py37_0
anaconda-navigator 1.9.12 py37_0
anaconda-project 0.8.4 py_0
applaunchservices 0.2.1 py_0
appnope 0.1.0 py37_0
appscript 1.1.0 py37h1de35cc_0
apptools 4.4.0 py37_1
argh 0.26.2 py37_0
asgiref 3.2.7 py_0
asn1crypto 1.3.0 py37_0
astroid 2.4.1 py37_0
astropy 4.0.1.post1 py37h01d97ff_1
async_generator 1.10 py37h28b3542_0
atomicwrites 1.4.0 py_0
attrs 19.3.0 py_0
autopep8 1.4.4 py_0
babel 2.8.0 py_0
backcall 0.1.0 py37_0
backports 1.0 py_2
backports.functools_lru_cache 1.6.1 py_0
backports.os 0.1.1 py37_0
backports.shutil_get_terminal_size 1.0.0 py37_2
backports.tempfile 1.0 py_1
backports.weakref 1.0.post1 py_1
beautifulsoup4 4.9.0 py37_0
bitarray 1.2.1 py37h1de35cc_0
bkcharts 0.2 py37_0
blas 1.0 mkl
bleach 3.1.4 py_0
blosc 1.16.3 hd9629dc_0
bokeh 2.0.2 py37_0
boto 2.49.0 py37_0
bottleneck 1.3.2 py37h776bbcc_0
bs4 0.0.1 pypi_0 pypi
bzip2 1.0.8 h1de35cc_0
ca-certificates 2020.1.1 0
certifi 2020.4.5.1 py37_0
cffi 1.14.0 py37hc512035_1
chardet 3.0.4 py37_1003
click 7.1.2 py_0
cloudpickle 1.4.1 py_0
clyent 1.2.2 py37_1
colorama 0.4.3 py_0
conda 4.8.3 py37_0
conda-build 3.18.9 py37_3
conda-env 2.6.0 1
conda-package-handling 1.6.1 py37h1de35cc_0
conda-verify 3.4.2 py_1
configobj 5.0.6 py37_1
contextlib2 0.6.0.post1 py_0
cryptography 2.9.2 py37ha12b0ac_0
curl 7.69.1 ha441bb4_0
cycler 0.10.0 py37_0
cython 0.29.17 py37h0a44026_0
cytoolz 0.10.1 py37h1de35cc_0
dask 2.17.2 py_0
dask-core 2.17.2 py_0
dbus 1.13.14 h517e14e_0
decorator 4.4.2 py_0
defusedxml 0.6.0 py_0
diff-match-patch 20181111 py_0
distributed 2.17.0 py37_0
django 3.0.3 py_0
docutils 0.16 py37_0
entrypoints 0.3 py37_0
envisage 4.8.0 py_0
et_xmlfile 1.0.1 py37_0
expat 2.2.6 h0a44026_0
fastcache 1.1.0 py37h1de35cc_0
filelock 3.0.12 py_0
flake8 3.8.2 py_0
flask 1.1.2 py_0
freetype 2.9.1 hb4e5f40_0
fsspec 0.7.4 py_0
future 0.18.2 py37_0
get_terminal_size 1.0.0 h7520d66_0
gettext 0.19.8.1 hb0f4f8b_2
gevent 1.4.0 py37h1de35cc_0
glib 2.63.1 h70d4741_1
glob2 0.7 py_0
gmp 6.1.2 hb37e062_1
gmpy2 2.0.8 py37h6ef4df4_2
greenlet 0.4.15 py37h1de35cc_0
h5py 2.10.0 py37h3134771_0
hdf4 4.2.13 h39711bb_2
hdf5 1.10.4 hfa1e0ec_0
heapdict 1.0.1 py_0
html5lib 1.0.1 py37_0
hypothesis 5.11.0 py_0
icu 58.2 h0a44026_3
idna 2.9 py_1
imageio 2.8.0 py_0
imagesize 1.2.0 py_0
importlib-metadata 1.6.0 py37_0
importlib_metadata 1.6.0 0
intel-openmp 2019.4 233
intervaltree 3.0.2 py_0
ipykernel 5.1.4 py37h39e3cac_0
ipython 7.13.0 py37h5ca1d4c_0
ipython_genutils 0.2.0 py37_0
ipywidgets 7.5.1 py_0
isort 4.3.21 py37_0
itsdangerous 1.1.0 py37_0
jbig 2.1 h4d881f8_0
jdcal 1.4.1 py_0
jedi 0.15.2 py37_0
jinja2 2.11.2 py_0
joblib 0.15.1 py_0
jpeg 9b he5867d9_2
json5 0.9.4 py_0
jsoncpp 1.8.4 h04f5b5a_0
jsonschema 3.2.0 py37_0
jupyter 1.0.0 py37_7
jupyter_client 6.1.3 py_0
jupyter_console 6.1.0 py_0
jupyter_core 4.6.3 py37_0
jupyter_server 0.1.1 py37_0 conda-forge
jupyterlab 2.0.1 py_0 conda-forge
jupyterlab_pygments 0.1.0 py_0 conda-forge
jupyterlab_server 1.1.4 py_0
keyring 21.1.1 py37_2
kiwisolver 1.2.0 py37h04f5b5a_0
krb5 1.17.1 hddcf347_0
lazy-object-proxy 1.4.3 py37h1de35cc_0
libarchive 3.3.3 h786848e_5
libcurl 7.69.1 h051b688_0
libcxx 10.0.0 1
libcxxabi 4.0.1 hcfea43d_1
libedit 3.1.20181209 hb402a30_0
libffi 3.3 h0a44026_1
libgfortran 3.0.1 h93005f0_2
libiconv 1.16 h1de35cc_0
liblief 0.10.1 h0a44026_0
libnetcdf 4.6.1 hd5207e6_2
libogg 1.3.2 h1de35cc_0
libpng 1.6.37 ha441bb4_0
libsodium 1.0.16 h3efe00b_0
libspatialindex 1.9.3 h0a44026_0
libssh2 1.9.0 ha12b0ac_1
libtheora 1.1.1 hb4e5f40_1
libtiff 4.1.0 hcb84e12_0
libvorbis 1.3.6 h1de35cc_0
libxml2 2.9.9 hf6e021a_1
libxslt 1.1.33 h33a18ac_0
llvm-openmp 10.0.0 h28b9765_0
llvmlite 0.32.1 py37h8c7ce04_0
locket 0.2.0 py37_1
lxml 4.5.0 py37hef8c89e_0
lz4-c 1.8.1.2 h1de35cc_0
lzo 2.10 h1de35cc_2
markupsafe 1.1.1 py37h1de35cc_0
matplotlib 3.1.3 py37_0
matplotlib-base 3.1.3 py37h9aa3819_0
mayavi 4.7.1 py37hd5f3a30_2 anaconda
mccabe 0.6.1 py37_1
mistune 0.8.4 py37h1de35cc_0
mkl 2019.4 233
mkl-service 2.3.0 py37hfbe908c_0
mkl_fft 1.0.15 py37h5e564d8_0
mkl_random 1.1.1 py37h959d312_0
mock 4.0.2 py_0
more-itertools 8.3.0 py_0
mpc 1.1.0 h6ef4df4_1
mpfr 4.0.1 h3018a27_3
mpmath 1.1.0 py37_0
msgpack-python 1.0.0 py37h04f5b5a_1
multipledispatch 0.6.0 py37_0
multitasking 0.0.9 pypi_0 pypi
navigator-updater 0.2.1 py37_0
nbconvert 5.6.1 py37_0
nbformat 5.0.6 py_0
ncurses 6.2 h0a44026_1
networkx 2.4 py_0
nltk 3.4.5 py37_0
nose 1.3.7 py37_2
notebook 6.0.3 py37_0 conda-forge
numba 0.49.1 py37h86efe34_0
numexpr 2.7.1 py37hce01a72_0
numpy 1.18.1 py37h7241aed_0
numpy-base 1.18.1 py37h3304bdc_1
numpydoc 0.9.2 py_0
olefile 0.46 py37_0
opencv-python 4.2.0.34 pypi_0 pypi
openpyxl 3.0.3 py_0
openssl 1.1.1g h1de35cc_0
packaging 20.3 py_0
pandas 1.0.3 py37h6c726b0_0
pandoc 2.2.3.2 0
pandocfilters 1.4.2 py37_1
parso 0.5.2 py_0
partd 1.1.0 py_0
path.py 11.5.0 py37_0
pathlib2 2.3.5 py37_0
pathtools 0.1.2 py_1
patsy 0.5.1 py37_0
pcre 8.43 h0a44026_0
pep8 1.7.1 py37_0
pexpect 4.8.0 py37_0
pickleshare 0.7.5 py37_0
pillow 7.1.2 py37h4655f20_0
pip 20.0.2 py37_3
pkginfo 1.5.0.1 py37_0
pluggy 0.13.1 py37_0
ply 3.11 py37_0
prometheus_client 0.7.1 py_0
prompt-toolkit 3.0.4 py_0
prompt_toolkit 3.0.4 0
psutil 5.7.0 py37h1de35cc_0
ptyprocess 0.6.0 py37_0
py 1.8.1 py_0
py-lief 0.10.1 py37haf313ee_0
pycodestyle 2.6.0 py_0
pycosat 0.6.3 py37h1de35cc_0
pycparser 2.20 py_0
pycrypto 2.6.1 py37h1de35cc_9
pycurl 7.43.0.5 py37ha12b0ac_0
pydocstyle 4.0.1 py_0
pyface 6.1.2 py37_0
pyflakes 2.2.0 py_0
pygments 2.6.1 py_0
pylint 2.5.2 py37_0
pyodbc 4.0.30 py37h0a44026_0
pyopenssl 19.1.0 py37_0
pyparsing 2.4.7 py_0
pyqt 5.9.2 py37h655552a_2
pyrsistent 0.16.0 py37h1de35cc_0
pysocks 1.7.1 py37_0
pytables 3.6.1 py37h5bccee9_0
pytest 5.4.2 py37_0
pytest-arraydiff 0.3 py37h39e3cac_0
pytest-astropy 0.8.0 py_0
pytest-astropy-header 0.1.2 py_0
pytest-doctestplus 0.5.0 py_0
pytest-openfiles 0.5.0 py_0
pytest-remotedata 0.3.2 py37_0
python 3.7.4 h359304d_1
python-dateutil 2.8.1 py_0
python-jsonrpc-server 0.3.4 py_0
python-language-server 0.31.9 py37_0
python-libarchive-c 2.9 py_0
python.app 2 py37_9
pytz 2020.1 py_0
pywavelets 1.1.1 py37h1de35cc_0
pyyaml 5.3.1 py37h1de35cc_0
pyzmq 18.1.1 py37h0a44026_0
qdarkstyle 2.8.1 py_0
qt 5.9.7 h468cd18_1
qtawesome 0.7.0 py_0
qtconsole 4.7.4 py_0
qtpy 1.9.0 py_0
readline 7.0 h1de35cc_5
requests 2.23.0 py37_0
ripgrep 11.0.2 he32d670_0
rope 0.17.0 py_0
rtree 0.9.4 py37_1
ruamel_yaml 0.15.87 py37h1de35cc_0
scikit-image 0.16.2 py37h6c726b0_0
scikit-learn 0.22.1 py37h27c97d8_0
scipy 1.4.1 py37h9fa6033_0
seaborn 0.10.1 py_0
send2trash 1.5.0 py37_0
setuptools 46.4.0 py37_0
simplegeneric 0.8.1 py37_2
simplejson 3.17.0 pypi_0 pypi
singledispatch 3.4.0.3 py37_0
sip 4.19.8 py37h0a44026_0
six 1.14.0 py37_0
snappy 1.1.7 he62c110_3
snowballstemmer 2.0.0 py_0
sortedcollections 1.1.2 py37_0
sortedcontainers 2.1.0 py37_0
soupsieve 2.0.1 py_0
sphinx 3.0.3 py_0
sphinxcontrib 1.0 py37_1
sphinxcontrib-applehelp 1.0.2 py_0
sphinxcontrib-devhelp 1.0.2 py_0
sphinxcontrib-htmlhelp 1.0.3 py_0
sphinxcontrib-jsmath 1.0.1 py_0
sphinxcontrib-qthelp 1.0.3 py_0
sphinxcontrib-serializinghtml 1.1.4 py_0
sphinxcontrib-websupport 1.2.1 py_0
spyder 4.1.1 py37_1
spyder-kernels 1.9.1 py37_0
sqlalchemy 1.3.17 py37haf1e3a3_0
sqlite 3.31.1 h5c1f38d_1
sqlparse 0.3.1 py_0
statsmodels 0.11.1 py37haf1e3a3_0
sympy 1.5.1 py37_0
tbb 2020.0 h04f5b5a_0
tblib 1.6.0 py_0
terminado 0.8.3 py37_0
testpath 0.4.4 py_0
tk 8.6.8 ha441bb4_0
toml 0.10.0 py37h28b3542_0
toolz 0.10.0 py_0
tornado 6.0.4 py37h1de35cc_1
tqdm 4.46.0 py_0
traitlets 4.3.3 py37_0
traits 5.2.0 py37h1de35cc_0 anaconda
traitsui 6.1.3 py_0
typed-ast 1.4.1 py37h1de35cc_0
typing_extensions 3.7.4.1 py37_0
ujson 1.35 py37h1de35cc_0
unicodecsv 0.14.1 py37_0
unixodbc 2.3.7 h1de35cc_0
urllib3 1.25.8 py37_0
voila 0.1.21 py_0 conda-forge
vtk 8.2.0 py37h9bafd54_200
watchdog 0.10.2 py37h1de35cc_0
wcwidth 0.1.9 py_0
webencodings 0.5.1 py37_1
werkzeug 1.0.1 py_0
wheel 0.34.2 py37_0
widgetsnbextension 3.5.1 py37_0
wrapt 1.11.2 py37h1de35cc_0
wurlitzer 2.0.0 py37_0
xlrd 1.2.0 py37_0
xlsxwriter 1.2.8 py_0
xlwings 0.19.4 py37_0
xlwt 1.3.0 py37_0
xmltodict 0.12.0 py_0
xz 5.2.5 h1de35cc_0
yahoo-finance 1.4.0 pypi_0 pypi
yaml 0.1.7 hc338f04_2
yapf 0.28.0 py_0
yfinance 0.1.54 pypi_0 pypi
zeromq 4.3.1 h0a44026_3
zict 2.0.0 py_0
zipp 3.1.0 py_0
zlib 1.2.11 h1de35cc_3
zstd 1.3.7 h5bba6e5_0
Updating conda can be tricky, depending on how it was installed previously.
To fix your current environment:
You can find and revert back to the previously working version using this command:
conda list --revisions
This will return a list of revisions to your conda environment, just
then select the revision you want (most recent working version) and run this command:
conda install --revision [n]

pygpu problem : DLL load failed: The specified procedure could not be found

When Trying to run a model in Theano on anaconda
Using TensorFlow backend.
pygame 1.9.6
Hello from the pygame community. https://www.pygame.org/contribute.html
F:\anaconda\lib\site-packages\theano\gpuarray\dnn.py:184: UserWarning: Your cuDNN version is more recent than Theano. If you encounter problems, try updating Theano or downgrading cuDNN to a version >= v5 and <= v7.
warnings.warn("Your cuDNN version is more recent than "
Loading nvrtc 11.0.
(Debug) ERROR 18: Could not load "nvrtc64_110.dll": The specified module could not be found.
Loading nvrtc 10.0.
Loading cuBLAS 10.0.
Using cuDNN version 7500 on context None
Mapped name None to device cuda: GeForce GTX 1050 Ti (0000:01:00.0)
Loading network...
Input shape: (None, 1, 112, 112)
DLL load failed: The specified procedure could not be found.
Traceback (most recent call last):
File "test/test_fast_swapping.py", line 14, in <module>
swapper = SWAPPER(vars, detector, weights_path + all_weights[1])
File "d:\dubflix\video_module\video_module\fast_swap\api.py", line 16, in __init__
self.aligner.loadNetwork(weights)
File "d:\dubflix\video_module\video_module\fast_swap\src\FaceAlignment.py", line 133, in loadNetwork
self.initializeNetwork()
File "d:\dubflix\video_module\video_module\fast_swap\src\FaceAlignment.py", line 41, in initializeNetwork
self.generate_network_output = theano.function([self.data], [self.prediction])
File "F:\anaconda\lib\site-packages\theano\compile\function.py", line 317, in function
output_keys=output_keys)
File "F:\anaconda\lib\site-packages\theano\compile\pfunc.py", line 486, in pfunc
output_keys=output_keys)
File "F:\anaconda\lib\site-packages\theano\compile\function_module.py", line 1841, in orig_function
fn = m.create(defaults)
File "F:\anaconda\lib\site-packages\theano\compile\function_module.py", line 1715, in create
input_storage=input_storage_lists, storage_map=storage_map)
File "F:\anaconda\lib\site-packages\theano\gof\link.py", line 699, in make_thunk
storage_map=storage_map)[:3]
File "F:\anaconda\lib\site-packages\theano\gof\vm.py", line 1091, in make_all
impl=impl))
File "F:\anaconda\lib\site-packages\theano\gof\op.py", line 955, in make_thunk
no_recycling)
File "F:\anaconda\lib\site-packages\theano\gof\op.py", line 858, in make_c_thunk
output_storage=node_output_storage)
File "F:\anaconda\lib\site-packages\theano\gof\cc.py", line 1217, in make_thunk
keep_lock=keep_lock)
File "F:\anaconda\lib\site-packages\theano\gof\cc.py", line 1157, in __compile__
keep_lock=keep_lock)
File "F:\anaconda\lib\site-packages\theano\gof\cc.py", line 1624, in cthunk_factory
key=key, lnk=self, keep_lock=keep_lock)
File "F:\anaconda\lib\site-packages\theano\gof\cmodule.py", line 1191, in module_from_key
module = lnk.compile_cmodule(location)
File "F:\anaconda\lib\site-packages\theano\gof\cc.py", line 1527, in compile_cmodule
preargs=preargs)
File "F:\anaconda\lib\site-packages\theano\gof\cmodule.py", line 2422, in compile_str
return dlimport(lib_filename)
File "F:\anaconda\lib\site-packages\theano\gof\cmodule.py", line 327, in dlimport
assert fullpath.startswith(rval.__file__)
AttributeError: ('The following error happened while compiling the node', GpuDnnConv{algo='small', inplace=True, num_groups=1}(GpuContiguous.0, GpuContiguous.0, GpuAllocEmpty{dtype='float64', context_name=None}.0, GpuDnnConvDesc{border_mode='half', subsample=(1, 1), dilation=(1, 1), conv_mode='conv', precision='float64', num_groups=1}.0, Constant{1.0}, Constant{0.0}), '\n', "'NoneType' object has no attribute '__file__'", "[GpuDnnConv{algo='small', inplace=True, num_groups=1}(<GpuArrayType<None>(float64, 4D)>, <GpuArrayType<None>(float64, (False, True, False, False))>, <GpuArrayType<None>(float64, 4D)>, <CDataType{cudnnConvolutionDescriptor_t}>, Constant{1.0}, Constant{0.0})]")
The important version informations are :
Anaconda (python 3.7)
Theano : 1.0.4 (latest from the master branch)
pygpu : 0.7.6 (installed from conda)
CUDA : 10.0
CUDNN : 7.6.5
I've checked the model loading without gpu and it works.
.theanorc.txt is like this:
[global]
device = cuda
[gcc]
cxxflags = -I"C:\Program Files\mingw-w64\x86_64-8.1.0-posix-seh-rt_v6-rev0\mingw64\bin"
[cuda]
root = C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v10.0
conda list -n env
gives
# packages in environment at F:\anaconda:
#
# Name Version Build Channel
_ipyw_jlab_nb_ext_conf 0.1.0 py37_0
_pytorch_select 1.1.0 cpu
absl-py 0.9.0 pypi_0 pypi
alabaster 0.7.12 py37_0
anaconda 2020.02 py37_0
anaconda-client 1.7.2 py37_0
anaconda-navigator 1.9.12 py37_0
anaconda-project 0.8.4 py_0
argh 0.26.2 py37_0
asn1crypto 1.3.0 py37_0
astor 0.8.1 pypi_0 pypi
astroid 2.3.3 py37_0
astropy 4.0 py37he774522_0
atomicwrites 1.3.0 py37_1
attrs 19.3.0 py_0
audio-module 0.0.1 dev_0 <develop>
audioread 2.1.8 pypi_0 pypi
autopep8 1.4.4 py_0
babel 2.8.0 py_0
backcall 0.1.0 py37_0
backports 1.0 py_2
backports.functools_lru_cache 1.6.1 py_0
backports.shutil_get_terminal_size 1.0.0 py37_2
backports.tempfile 1.0 py_1
backports.weakref 1.0.post1 py_1
bcrypt 3.1.7 py37he774522_0
beautifulsoup4 4.8.2 py37_0
bitarray 1.2.1 py37he774522_0
bkcharts 0.2 py37_0
blas 1.0 mkl conda-forge
bleach 3.1.0 py37_0
blosc 1.16.3 h7bd577a_0
bokeh 1.4.0 py37_0
boto 2.49.0 py37_0
boto3 1.12.40 pypi_0 pypi
botocore 1.15.40 pypi_0 pypi
bottleneck 1.3.2 py37h2a96729_0
bzip2 1.0.8 he774522_0
ca-certificates 2020.1.1 0
certifi 2019.11.28 py37_0
cffi 1.14.0 py37h7a1dbc1_0
chardet 3.0.4 py37_1003
click 7.0 py37_0
cloudpickle 1.3.0 py_0
clyent 1.2.2 py37_1
cmake 3.14.0 h33f27b4_0
colorama 0.4.3 py_0
comtypes 1.1.7 py37_0
conda 4.8.3 py37_0
conda-build 3.18.11 py37_0
conda-env 2.6.0 1
conda-package-handling 1.6.0 py37h62dcd97_0
conda-verify 3.4.2 py_1
console_shortcut 0.1.1 4
contextlib2 0.6.0.post1 py_0
cryptography 2.8 py37h7a1dbc1_0
cudatoolkit 10.1.243 h74a9793_0
curl 7.68.0 h2a8f88b_0
cvlib 0.2.5 pypi_0 pypi
cycler 0.10.0 py37_0
cython 0.29.15 py37ha925a31_0
cytoolz 0.10.1 py37he774522_0
dask 2.11.0 py_0
dask-core 2.11.0 py_0
decorator 4.4.1 py_0
defusedxml 0.6.0 py_0
diff-match-patch 20181111 py_0
distributed 2.11.0 py37_0
dlib 19.19.0 pypi_0 pypi
docopt 0.6.2 pypi_0 pypi
docutils 0.15.2 pypi_0 pypi
entrypoints 0.3 py37_0
et_xmlfile 1.0.1 py37_0
face-recognition 1.3.0 pypi_0 pypi
face-recognition-models 0.3.0 pypi_0 pypi
fastcache 1.1.0 py37he774522_0
filelock 3.0.12 py_0
flake8 3.7.9 py37_0
flask 1.1.1 py_0
freetype 2.9.1 ha9979f8_1
fsspec 0.6.2 py_0
future 0.18.2 py37_0
gast 0.3.3 pypi_0 pypi
get_terminal_size 1.0.0 h38e98db_0
gevent 1.4.0 py37he774522_0
glob2 0.7 py_0
google-pasta 0.2.0 pypi_0 pypi
greenlet 0.4.15 py37hfa6e2cd_0
grpcio 1.28.1 pypi_0 pypi
h5py 2.10.0 py37h5e291fa_0
hdf5 1.10.4 h7ebc959_0
heapdict 1.0.1 py_0
html5lib 1.0.1 py37_0
hypothesis 5.5.4 py_0
icc_rt 2019.0.0 h0cc432a_1
icu 58.2 ha66f8fd_1
idna 2.8 py37_0
imageio 2.6.1 py37_0
imagesize 1.2.0 py_0
importlib_metadata 1.5.0 py37_0
imutils 0.5.3 pypi_0 pypi
inaspeechsegmenter 0.5.1 pypi_0 pypi
intel-openmp 2020.0 166
intervaltree 3.0.2 py_0
ipykernel 5.1.4 py37h39e3cac_0
ipython 7.12.0 py37h5ca1d4c_0
ipython_genutils 0.2.0 py37_0
ipywidgets 7.5.1 py_0
isort 4.3.21 py37_0
itsdangerous 1.1.0 py37_0
jdcal 1.4.1 py_0
jedi 0.14.1 py37_0
jinja2 2.11.1 py_0
jmespath 0.9.5 pypi_0 pypi
joblib 0.14.1 py_0
jpeg 9b hb83a4c4_2
json5 0.9.1 py_0
jsonschema 3.2.0 py37_0
jupyter 1.0.0 py37_7
jupyter_client 5.3.4 py37_0
jupyter_console 6.1.0 py_0
jupyter_core 4.6.1 py37_0
jupyterlab 1.2.6 pyhf63ae98_0
jupyterlab_server 1.0.6 py_0
keras 2.3.1 pypi_0 pypi
keras-applications 1.0.8 pypi_0 pypi
keras-preprocessing 1.1.0 pypi_0 pypi
keras-vggface 0.6 pypi_0 pypi
keyring 21.1.0 py37_0
kiwisolver 1.1.0 py37ha925a31_0
krb5 1.17.1 hc04afaa_0
lasagne 0.2.dev1 pypi_0 pypi
lazy-object-proxy 1.4.3 py37he774522_0
libarchive 3.3.3 h0643e63_5
libcurl 7.68.0 h2a8f88b_0
libgpuarray 0.7.6 hfa6e2cd_0
libiconv 1.15 h1df5818_7
liblief 0.9.0 ha925a31_2
libpng 1.6.37 h2a8f88b_0
libpython 2.1 py37_0
librosa 0.7.2 pypi_0 pypi
libsodium 1.0.16 h9d3ae62_0
libspatialindex 1.9.3 h33f27b4_0
libssh2 1.8.2 h7a1dbc1_0
libtiff 4.1.0 h56a325e_0
libxml2 2.9.9 h464c3ec_0
libxslt 1.1.33 h579f668_0
llvmlite 0.31.0 py37ha925a31_0
locket 0.2.0 py37_1
lxml 4.5.0 py37h1350720_0
lz4-c 1.8.1.2 h2fa13f4_0
lzo 2.10 h6df0209_2
m2w64-binutils 2.25.1 5
m2w64-bzip2 1.0.6 6
m2w64-crt-git 5.0.0.4636.2595836 2
m2w64-gcc 5.3.0 6
m2w64-gcc-ada 5.3.0 6
m2w64-gcc-fortran 5.3.0 6
m2w64-gcc-libgfortran 5.3.0 6
m2w64-gcc-libs 5.3.0 7
m2w64-gcc-libs-core 5.3.0 7
m2w64-gcc-objc 5.3.0 6
m2w64-gmp 6.1.0 2
m2w64-headers-git 5.0.0.4636.c0ad18a 2
m2w64-isl 0.16.1 2
m2w64-libiconv 1.14 6
m2w64-libmangle-git 5.0.0.4509.2e5a9a2 2
m2w64-libwinpthread-git 5.0.0.4634.697f757 2
m2w64-make 4.1.2351.a80a8b8 2
m2w64-mpc 1.0.3 3
m2w64-mpfr 3.1.4 4
m2w64-pkg-config 0.29.1 2
m2w64-toolchain 5.3.0 7
m2w64-tools-git 5.0.0.4592.90b8472 2
m2w64-windows-default-manifest 6.4 3
m2w64-winpthreads-git 5.0.0.4634.697f757 2
m2w64-zlib 1.2.8 10
mako 1.1.2 py_0
markdown 3.2.1 pypi_0 pypi
markupsafe 1.1.1 py37he774522_0
matplotlib 3.1.3 py37_0
matplotlib-base 3.1.3 py37h64f37c6_0
mccabe 0.6.1 py37_1
menuinst 1.4.16 py37he774522_0
mistune 0.8.4 py37he774522_0
mkl 2020.0 166
mkl-service 2.3.0 py37hb782905_0
mkl_fft 1.0.15 py37h14836fe_0
mkl_random 1.1.0 py37h675688f_0
mock 4.0.1 py_0
more-itertools 8.2.0 py_0
mpmath 1.1.0 py37_0
msgpack-python 0.6.1 py37h74a9793_1
msys2-conda-epoch 20160418 1
multipledispatch 0.6.0 py37_0
munkres 1.1.2 pypi_0 pypi
navigator-updater 0.2.1 py37_0
nbconvert 5.6.1 py37_0
nbformat 5.0.4 py_0
networkx 2.4 py_0
ninja 1.9.0 py37h74a9793_0
nltk 3.4.5 py37_0
nose 1.3.7 py37_2
notebook 6.0.3 py37_0
numba 0.48.0 py37h47e9c7a_0
numexpr 2.7.1 py37h25d0782_0
numpy 1.16.0 pypi_0 pypi
numpydoc 0.9.2 py_0
olefile 0.46 py37_0
opencv-python 4.2.0.34 pypi_0 pypi
openpyxl 3.0.3 py_0
openssl 1.1.1d he774522_4
packaging 20.1 py_0
pandas 1.0.1 py37h47e9c7a_0
pandoc 2.2.3.2 0
pandocfilters 1.4.2 py37_1
paramiko 2.7.1 py_0
parso 0.5.2 py_0
partd 1.1.0 py_0
path 13.1.0 py37_0
path.py 12.4.0 0
pathlib2 2.3.5 py37_0
pathtools 0.1.2 py_1
patsy 0.5.1 py37_0
pep8 1.7.1 py37_0
pexpect 4.8.0 py37_0
pickleshare 0.7.5 py37_0
pillow 7.0.0 py37hcc1f983_0
pip 20.0.2 py37_1
pkginfo 1.5.0.1 py37_0
pluggy 0.13.1 py37_0
ply 3.11 py37_0
powershell_shortcut 0.0.1 3
progressbar 2.5 pypi_0 pypi
prometheus_client 0.7.1 py_0
prompt_toolkit 3.0.3 py_0
protobuf 3.11.3 pypi_0 pypi
psutil 5.6.7 py37he774522_0
py 1.8.1 py_0
py-lief 0.9.0 py37ha925a31_2
pyannote-algorithms 0.8 pypi_0 pypi
pyannote-core 3.7.1 pypi_0 pypi
pyannote-parser 0.8 pypi_0 pypi
pycodestyle 2.5.0 py37_0
pycosat 0.6.3 py37he774522_0
pycparser 2.19 py37_0
pycrypto 2.6.1 py37hfa6e2cd_9
pycurl 7.43.0.5 py37h7a1dbc1_0
pydocstyle 4.0.1 py_0
pydub 0.23.1 pypi_0 pypi
pyflakes 2.1.1 py37_0
pygame 1.9.6 pypi_0 pypi
pygments 2.5.2 py_0
pygpu 0.7.6 py37hc8d92b1_1000 conda-forge
pylint 2.4.4 py37_0
pynacl 1.3.0 py37h62dcd97_0
pyodbc 4.0.30 py37ha925a31_0
pyopengl 3.1.5 pypi_0 pypi
pyopenssl 19.1.0 py37_0
pyparsing 2.4.6 py_0
pyqt 5.9.2 py37h6538335_2
pyreadline 2.1 py37_1
pyro4 4.79 pypi_0 pypi
pyrsistent 0.15.7 py37he774522_0
pysocks 1.7.1 py37_0
pytables 3.6.1 py37h1da0976_0
pytest 5.3.5 py37_0
pytest-arraydiff 0.3 py37h39e3cac_0
pytest-astropy 0.8.0 py_0
pytest-astropy-header 0.1.2 py_0
pytest-doctestplus 0.5.0 py_0
pytest-openfiles 0.4.0 py_0
pytest-remotedata 0.3.2 py37_0
python 3.7.6 h60c2a47_2
python-dateutil 2.8.1 py_0
python-jsonrpc-server 0.3.4 py_0
python-language-server 0.31.7 py37_0
python-libarchive-c 2.8 py37_13
python_abi 3.7 1_cp37m conda-forge
pytorch 1.4.0 py3.7_cuda101_cudnn7_0 pytorch
pytz 2019.3 py_0
pywavelets 1.1.1 py37he774522_0
pywin32 227 py37he774522_1
pywin32-ctypes 0.2.0 py37_1000
pywinpty 0.5.7 py37_0
pyyaml 5.3 py37he774522_0
pyzmq 18.1.1 py37ha925a31_0
qdarkstyle 2.8 py_0
qt 5.9.7 vc14h73c81de_0
qtawesome 0.6.1 py_0
qtconsole 4.6.0 py_1
qtpy 1.9.0 py_0
requests 2.22.0 py37_1
resampy 0.2.2 pypi_0 pypi
rope 0.16.0 py_0
rtree 0.9.3 py37h21ff451_0
ruamel_yaml 0.15.87 py37he774522_0
s3transfer 0.3.3 pypi_0 pypi
scikit-image 0.16.2 py37h47e9c7a_0
scikit-learn 0.22.1 py37h6288b17_0
scipy 1.4.1 py37h9439919_0
seaborn 0.10.0 py_0
send2trash 1.5.0 py37_0
serpent 1.30.2 pypi_0 pypi
setuptools 45.2.0 py37_0
sidekit 1.3.6.6 pypi_0 pypi
simplegeneric 0.8.1 py37_2
simplejson 3.17.0 pypi_0 pypi
singledispatch 3.4.0.3 py37_0
sip 4.19.8 py37h6538335_0
six 1.14.0 py37_0
snappy 1.1.7 h777316e_3
snowballstemmer 2.0.0 py_0
sortedcollections 1.1.2 py37_0
sortedcontainers 2.1.0 py37_0
soundfile 0.10.3.post1 pypi_0 pypi
soupsieve 1.9.5 py37_0
spectralcluster 0.0.9 pypi_0 pypi
sphinx 2.4.0 py_0
sphinxcontrib 1.0 py37_1
sphinxcontrib-applehelp 1.0.1 py_0
sphinxcontrib-devhelp 1.0.1 py_0
sphinxcontrib-htmlhelp 1.0.2 py_0
sphinxcontrib-jsmath 1.0.1 py_0
sphinxcontrib-qthelp 1.0.2 py_0
sphinxcontrib-serializinghtml 1.1.3 py_0
sphinxcontrib-websupport 1.2.0 py_0
spyder 4.0.1 py37_0
spyder-kernels 1.8.1 py37_0
sqlalchemy 1.3.13 py37he774522_0
sqlite 3.31.1 he774522_0
statsmodels 0.11.0 py37he774522_0
sympy 1.5.1 py37_0
tbb 2020.0 h74a9793_0
tblib 1.6.0 py_0
tensorboard 1.14.0 pypi_0 pypi
tensorflow-estimator 1.14.0 pypi_0 pypi
tensorflow-gpu 1.14.0 pypi_0 pypi
termcolor 1.1.0 pypi_0 pypi
terminado 0.8.3 py37_0
testpath 0.4.4 py_0
theano 1.0.4+51.gf1e4ec47c pypi_0 pypi
tk 8.6.8 hfa6e2cd_0
toolz 0.10.0 py_0
torchvision 0.5.0 py37_cu101 pytorch
tornado 6.0.3 py37he774522_3
tqdm 4.42.1 py_0
traitlets 4.3.3 py37_0
typing-extensions 3.7.4.2 pypi_0 pypi
ujson 1.35 py37hfa6e2cd_0
unicodecsv 0.14.1 py37_0
urllib3 1.25.8 py37_0
vc 14.1 h0510ff6_4
video-module 0.0.1 dev_0 <develop>
vs2015_runtime 14.16.27012 hf0eaf9b_1
watchdog 0.10.2 py37_0
wcwidth 0.1.8 py_0
webencodings 0.5.1 py37_1
webrtcvad 2.0.10 pypi_0 pypi
werkzeug 1.0.0 py_0
wheel 0.34.2 py37_0
widgetsnbextension 3.5.1 py37_0
win_inet_pton 1.1.0 py37_0
win_unicode_console 0.5 py37_0
wincertstore 0.2 py37_0
winpty 0.4.3 4
wrapt 1.11.2 py37he774522_0
xarray 0.15.1 pypi_0 pypi
xlrd 1.2.0 py37_0
xlsxwriter 1.2.7 py_0
xlwings 0.17.1 py37_0
xlwt 1.3.0 py37_0
xmltodict 0.12.0 py_0
xz 5.2.4 h2fa13f4_4
yaml 0.1.7 hc54c509_2
yapf 0.28.0 py_0
zeromq 4.3.1 h33f27b4_3
zict 1.0.0 py_0
zipp 2.2.0 py_0
zlib 1.2.11 h62dcd97_3
zstd 1.3.7 h508b16e_0
Create two different virtual environments. One for the CPU and another for the GPU. In the CPU install the TensorFlow CPU and in the GPU use the TensorFlow GPU. See if it works well separately.

Jupyter notebook does not start in Anaconda environment

On MacOS Mojave 10.14.3 I have installed Anaconda 4.6.8 and created my own environment to run Tensorflow
conda update conda
conda create -n davide-tf python=3.7.0 anaconda
conda activate davide-tf
pip install --upgrade pip
pip install --ignore-installed --upgrade ~/Downloads/tensorflow-1.12.0-cp37-cp37m-macosx_10_13_x86_64.whl
pip install pandas scikit-learn statsmodels matplotlib keras xgboost
When I open Anaconda Navigator and I select my davide-tf environment and try to launch Jupyter Notebook 5.7.6 the notebook does not start.
When I select the base environment, Jupyter Notebook starts as expected.
Can someone shed some light?
(base) mylaptop:~ bajd$ conda list -n base
# packages in environment at /ANACONDA/anaconda3:
#
# Name Version Build Channel
alabaster 0.7.12 py37_0
anaconda-client 1.7.2 py37_0
anaconda-navigator 1.9.6 py37_0
anaconda-project 0.8.2 py37_0
appnope 0.1.0 py37_0
appscript 1.0.1 py37h1de35cc_1
asn1crypto 0.24.0 py37_0
astroid 2.1.0 py37_0
astropy 3.1 py37h1de35cc_0
atomicwrites 1.2.1 py37_0
attrs 18.2.0 py37h28b3542_0
babel 2.6.0 py37_0
backcall 0.1.0 py37_0
backports 1.0 py37_1
backports.os 0.1.1 py37_0
backports.shutil_get_terminal_size 1.0.0 py37_2
beautifulsoup4 4.6.3 py37_0
bitarray 0.8.3 py37h1de35cc_0
bkcharts 0.2 py37_0
blas 1.0 mkl
blaze 0.11.3 py37_0
bleach 3.0.2 py37_0
blosc 1.14.4 hd9629dc_0
bokeh 1.0.2 py37_0
boto 2.49.0 py37_0
bottleneck 1.2.1 py37h1d22016_1
bzip2 1.0.6 h1de35cc_5
ca-certificates 2019.3.9 hecc5488_0 conda-forge
certifi 2019.3.9 py37_0 conda-forge
cffi 1.11.5 py37h6174b99_1
chardet 3.0.4 py37_1
click 7.0 py37_0
cloudpickle 0.6.1 py37_0
clyent 1.2.2 py37_1
colorama 0.4.1 py37_0
conda 4.6.8 py37_0 conda-forge
conda-build 3.17.6 py37_0
conda-env 2.6.0 1
conda-verify 3.1.1 py37_0
contextlib2 0.5.5 py37_0
cryptography 2.4.2 py37ha12b0ac_0
curl 7.63.0 ha441bb4_1000
cycler 0.10.0 py37_0
cython 0.29.2 py37h0a44026_0
cytoolz 0.9.0.1 py37h1de35cc_1
dask 1.0.0 py37_0
dask-core 1.0.0 py37_0
datashape 0.5.4 py37_1
dbus 1.13.2 h760590f_1
decorator 4.3.0 py37_0
defusedxml 0.5.0 py37_1
distributed 1.25.1 py37_0
docutils 0.14 py37_0
entrypoints 0.2.3 py37_2
et_xmlfile 1.0.1 py37_0
expat 2.2.6 h0a44026_0
fastcache 1.0.2 py37h1de35cc_2
filelock 3.0.10 py37_0
flask 1.0.2 py37_1
flask-cors 3.0.7 py37_0
freetype 2.9.1 hb4e5f40_0
future 0.17.1 py37_0
get_terminal_size 1.0.0 h7520d66_0
gettext 0.19.8.1 h15daf44_3
gevent 1.3.7 py37h1de35cc_1
glib 2.56.2 hd9629dc_0
glob2 0.6 py37_1
gmp 6.1.2 hb37e062_1
gmpy2 2.0.8 py37h6ef4df4_2
greenlet 0.4.15 py37h1de35cc_0
h5py 2.8.0 py37h878fce3_3
hdf5 1.10.2 hfa1e0ec_1
heapdict 1.0.0 py37_2
html5lib 1.0.1 py37_0
icu 58.2 h4b95b61_1
idna 2.8 py37_0
imageio 2.4.1 py37_0
imagesize 1.1.0 py37_0
importlib_metadata 0.6 py37_0
intel-openmp 2019.1 144
ipykernel 5.1.0 py37h39e3cac_0
ipython 7.2.0 py37h39e3cac_0
ipython_genutils 0.2.0 py37_0
ipywidgets 7.4.2 pypi_0 pypi
isort 4.3.4 py37_0
itsdangerous 1.1.0 py37_0
jbig 2.1 h4d881f8_0
jdcal 1.4 py37_0
jedi 0.13.2 py37_0
jinja2 2.10 py37_0
jpeg 9b he5867d9_2
jsonschema 2.6.0 py37_0
jupyter 1.0.0 pypi_0 pypi
jupyter_client 5.2.4 py37_0
jupyter_console 6.0.0 py37_0
jupyter_core 4.4.0 py37_0
keyring 17.0.0 py37_0
kiwisolver 1.0.1 py37h0a44026_0
krb5 1.16.1 hddcf347_7
lazy-object-proxy 1.3.1 py37h1de35cc_2
libarchive 3.3.3 h786848e_5
libcurl 7.63.0 h051b688_1000
libcxx 4.0.1 hcfea43d_1
libcxxabi 4.0.1 hcfea43d_1
libedit 3.1.20170329 hb402a30_2
libffi 3.2.1 h475c297_4
libgfortran 3.0.1 h93005f0_2
libiconv 1.15 hdd342a3_7
liblief 0.9.0 h2a1bed3_0
libpng 1.6.35 ha441bb4_0
libsodium 1.0.16 h3efe00b_0
libssh2 1.8.0 ha12b0ac_4
libtiff 4.0.9 hcb84e12_2
libxml2 2.9.8 hab757c2_1
libxslt 1.1.32 hb819dd2_0
llvmlite 0.26.0 py37h8c7ce04_0
locket 0.2.0 py37_1
lxml 4.2.5 py37hef8c89e_0
lz4-c 1.8.1.2 h1de35cc_0
lzo 2.10 h362108e_2
markupsafe 1.1.0 py37h1de35cc_0
matplotlib 3.0.3 py37_0 conda-forge
matplotlib-base 3.0.3 py37hf043ca5_0 conda-forge
mccabe 0.6.1 py37_1
mistune 0.8.4 py37h1de35cc_0
mkl 2019.1 144
mkl-service 1.1.2 py37hfbe908c_5
mkl_fft 1.0.6 py37h27c97d8_0
mkl_random 1.0.2 py37h27c97d8_0
more-itertools 4.3.0 py37_0
mpc 1.1.0 h6ef4df4_1
mpfr 4.0.1 h3018a27_3
mpmath 1.1.0 py37_0
msgpack-python 0.5.6 py37h04f5b5a_1
multipledispatch 0.6.0 py37_0
navigator-updater 0.2.1 py37_0
nbconvert 5.4.0 py37_1
nbformat 4.4.0 py37_0
ncurses 6.1 h0a44026_1
networkx 2.2 py37_1
nltk 3.4 py37_1
nose 1.3.7 py37_2
notebook 5.7.6 py37_0 conda-forge
numba 0.41.0 py37h6440ff4_0
numexpr 2.6.8 py37h7413580_0
numpy 1.15.4 py37hacdab7b_0
numpy-base 1.15.4 py37h6575580_0
numpydoc 0.8.0 py37_0
odo 0.5.1 py37_0
olefile 0.46 py37_0
openpyxl 2.5.12 py37_0
openssl 1.1.1b h1de35cc_1 conda-forge
packaging 18.0 py37_0
pandas 0.23.4 py37h6440ff4_0
pandoc 1.19.2.1 ha5e8f32_1
pandocfilters 1.4.2 py37_1
parso 0.3.1 py37_0
partd 0.3.9 py37_0
path.py 11.5.0 py37_0
pathlib2 2.3.3 py37_0
patsy 0.5.1 py37_0
pcre 8.42 h378b8a2_0
pep8 1.7.1 py37_0
pexpect 4.6.0 py37_0
pickleshare 0.7.5 py37_0
pillow 5.3.0 py37hb68e598_0
pip 18.1 py37_0
pkginfo 1.4.2 py37_1
pluggy 0.8.0 py37_0
ply 3.11 py37_0
prometheus_client 0.5.0 py37_0
prompt_toolkit 2.0.7 py37_0
psutil 5.4.8 py37h1de35cc_0
ptyprocess 0.6.0 py37_0
py 1.7.0 py37_0
py-lief 0.9.0 py37hd4eaf27_0
pycodestyle 2.4.0 py37_0
pycosat 0.6.3 py37h1de35cc_0
pycparser 2.19 py37_0
pycrypto 2.6.1 py37h1de35cc_9
pycurl 7.43.0.2 py37ha12b0ac_0
pyflakes 2.0.0 py37_0
pygments 2.3.1 py37_0
pylint 2.2.2 py37_0
pyodbc 4.0.25 py37h0a44026_0
pyopenssl 18.0.0 py37_0
pyparsing 2.3.0 py37_0
pyqt 5.9.2 py37h655552a_2
pysocks 1.6.8 py37_0
pytables 3.4.4 py37h13cba08_0
pytest 4.0.2 py37_0
pytest-arraydiff 0.3 py37h39e3cac_0
pytest-astropy 0.5.0 py37_0
pytest-doctestplus 0.2.0 py37_0
pytest-openfiles 0.3.1 py37_0
pytest-remotedata 0.3.1 py37_0
python 3.7.1 haf84260_7
python-dateutil 2.7.5 py37_0
python-libarchive-c 2.8 py37_6
python.app 1.2 py37h1de35cc_1200 conda-forge
pytz 2018.7 py37_0
pywavelets 1.0.1 py37h1d22016_0
pyyaml 3.13 py37h1de35cc_0
pyzmq 17.1.2 py37h1de35cc_0
qt 5.9.7 h468cd18_1
qtawesome 0.5.3 py37_0
qtconsole 4.4.3 py37_0
qtpy 1.5.2 py37_0
readline 7.0 h1de35cc_5
requests 2.21.0 py37_0
rope 0.11.0 py37_0
ruamel_yaml 0.15.46 py37h1de35cc_0
scikit-image 0.14.1 py37h0a44026_0
scikit-learn 0.20.1 py37h27c97d8_0
scipy 1.1.0 py37h1410ff5_2
seaborn 0.9.0 py37_0
send2trash 1.5.0 py37_0
setuptools 40.6.3 py37_0
simplegeneric 0.8.1 py37_2
singledispatch 3.4.0.3 py37_0
sip 4.19.8 py37h0a44026_0
six 1.12.0 py37_0
snappy 1.1.7 he62c110_3
snowballstemmer 1.2.1 py37_0
sortedcollections 1.0.1 py37_0
sortedcontainers 2.1.0 py37_0
sphinx 1.8.2 py37_0
sphinxcontrib 1.0 py37_1
sphinxcontrib-websupport 1.1.0 py37_1
spyder 3.3.2 py37_0
spyder-kernels 0.3.0 py37_0
sqlalchemy 1.2.15 py37h1de35cc_0
sqlite 3.26.0 ha441bb4_0
statsmodels 0.9.0 py37h1d22016_0
sympy 1.3 py37_0
tblib 1.3.2 py37_0
terminado 0.8.1 py37_1
testpath 0.4.2 py37_0
tk 8.6.8 ha441bb4_0
toolz 0.9.0 py37_0
tornado 5.1.1 py37h1de35cc_0
tqdm 4.28.1 py37h28b3542_0
traitlets 4.3.2 py37_0
unicodecsv 0.14.1 py37_0
unixodbc 2.3.7 h1de35cc_0
urllib3 1.24.1 py37_0
wcwidth 0.1.7 py37_0
webencodings 0.5.1 py37_1
werkzeug 0.14.1 py37_0
wheel 0.32.3 py37_0
widgetsnbextension 3.4.2 pypi_0 pypi
wrapt 1.10.11 py37h1de35cc_2
wurlitzer 1.0.2 py37_0
xlrd 1.2.0 py37_0
xlsxwriter 1.1.2 py37_0
xlwings 0.15.1 py37_0
xlwt 1.3.0 py37_0
xz 5.2.4 h1de35cc_4
yaml 0.1.7 hc338f04_2
zeromq 4.2.5 h0a44026_1
zict 0.1.3 py37_0
zlib 1.2.11 h1de35cc_3
zstd 1.3.7 h5bba6e5_0
(davide-tf) mylaptop:~ bajd$ conda list -n davide-tf
# packages in environment at /ANACONDA/anaconda3/envs/davide-tf:
#
# Name Version Build Channel
absl-py 0.7.1 pypi_0 pypi
anaconda custom py37_0
appnope 0.1.0 py37_1000 conda-forge
astor 0.7.1 pypi_0 pypi
attrs 19.1.0 py_0 conda-forge
backcall 0.1.0 py_0 conda-forge
bleach 3.1.0 py_0 conda-forge
bzip2 1.0.6 h1de35cc_1002 conda-forge
ca-certificates 2019.3.9 hecc5488_0 conda-forge
certifi 2019.3.9 py37_0 conda-forge
cycler 0.10.0 pypi_0 pypi
decorator 4.4.0 py_0 conda-forge
defusedxml 0.5.0 py_1 conda-forge
entrypoints 0.3 py37_1000 conda-forge
gast 0.2.2 pypi_0 pypi
grpcio 1.19.0 pypi_0 pypi
h5py 2.9.0 pypi_0 pypi
ipykernel 5.1.0 py37h24bf2e0_1002 conda-forge
ipython 7.3.0 py37h24bf2e0_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.4.2 pypi_0 pypi
jedi 0.13.3 py37_0 conda-forge
jinja2 2.10 py_1 conda-forge
jsonschema 3.0.1 py37_0 conda-forge
jupyter 1.0.0 pypi_0 pypi
jupyter-console 6.0.0 pypi_0 pypi
jupyter_client 5.2.4 py_3 conda-forge
jupyter_core 4.4.0 py_0 conda-forge
keras 2.2.4 pypi_0 pypi
keras-applications 1.0.7 pypi_0 pypi
keras-preprocessing 1.0.9 pypi_0 pypi
kiwisolver 1.0.1 pypi_0 pypi
libcxx 4.0.1 h579ed51_0
libcxxabi 4.0.1 hebd6815_0 conda-forge
libffi 3.2.1 h6de7cb9_1006 conda-forge
libsodium 1.0.16 h1de35cc_1001 conda-forge
markdown 3.0.1 pypi_0 pypi
markupsafe 1.1.1 py37h1de35cc_0 conda-forge
matplotlib 3.0.3 pypi_0 pypi
mistune 0.8.4 py37h1de35cc_1000 conda-forge
nbconvert 5.4.1 py_2 conda-forge
nbformat 4.4.0 py_1 conda-forge
ncurses 6.1 h0a44026_1002 conda-forge
notebook 5.7.6 py37_0 conda-forge
numpy 1.16.2 pypi_0 pypi
openssl 1.0.2r h1de35cc_0 conda-forge
pandas 0.24.2 pypi_0 pypi
pandoc 2.7.1 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
parso 0.3.4 py_0 conda-forge
patsy 0.5.1 pypi_0 pypi
pexpect 4.6.0 py37_1000 conda-forge
pickleshare 0.7.5 py37_1000 conda-forge
pip 19.0.3 py37_0 conda-forge
prometheus_client 0.6.0 py_0 conda-forge
prompt_toolkit 2.0.9 py_0 conda-forge
protobuf 3.7.0 pypi_0 pypi
ptyprocess 0.6.0 py37_1000 conda-forge
pygments 2.3.1 py_0 conda-forge
pyparsing 2.3.1 pypi_0 pypi
pyrsistent 0.14.11 py37h1de35cc_0 conda-forge
python 3.7.0 h145921a_1006 conda-forge
python-dateutil 2.8.0 py_0 conda-forge
pytz 2018.9 pypi_0 pypi
pyyaml 5.1 pypi_0 pypi
pyzmq 18.0.1 py37h4cc6ddd_0 conda-forge
qtconsole 4.4.3 pypi_0 pypi
readline 7.0 hcfe32e1_1001 conda-forge
scikit-learn 0.20.3 pypi_0 pypi
scipy 1.2.1 pypi_0 pypi
send2trash 1.5.0 py_0 conda-forge
setuptools 40.8.0 pypi_0 pypi
six 1.12.0 pypi_0 pypi
sqlite 3.26.0 h1765d9f_1001 conda-forge
statsmodels 0.9.0 pypi_0 pypi
tensorboard 1.12.2 pypi_0 pypi
tensorflow 1.12.0 pypi_0 pypi
termcolor 1.1.0 pypi_0 pypi
terminado 0.8.1 py37_1001 conda-forge
testpath 0.4.2 py_1001 conda-forge
tk 8.6.9 ha441bb4_1000 conda-forge
tornado 6.0.1 py37h1de35cc_0 conda-forge
traitlets 4.3.2 py37_1000 conda-forge
wcwidth 0.1.7 py_1 conda-forge
webencodings 0.5.1 py_1 conda-forge
werkzeug 0.15.0 pypi_0 pypi
wheel 0.33.1 pypi_0 pypi
widgetsnbextension 3.4.2 pypi_0 pypi
xgboost 0.82 pypi_0 pypi
xz 5.2.4 h1de35cc_1001 conda-forge
zeromq 4.2.5 h0a44026_1006 conda-forge
zlib 1.2.11 h1de35cc_1004 conda-forge

Python: why do I get an error when I import geopandas?

I try to import geopandas in my jupyter notebook.
import geopandas as gp
and I get the following error:
ImportError: dlopen(/anaconda3/lib/python3.7/site-packages/fiona/ogrext.cpython-37m-darwin.so, 2): Library not loaded: #rpath/libkea.1.4.7.dylib
Referenced from: /anaconda3/lib/libgdal.20.dylib
Reason: image not found
Below the installed packages
conda list
# Name Version Build Channel
_ipyw_jlab_nb_ext_conf 0.1.0 py37_0
alabaster 0.7.12 py37_0
anaconda-client 1.7.2 py37_0
anaconda-navigator 1.9.6 py37_0
anaconda-project 0.8.2 py37_0
appnope 0.1.0 py37_0
appscript 1.0.1 py37h1de35cc_1
asn1crypto 0.24.0 py37_0
astroid 2.1.0 py37_0
astropy 3.1 py37h1de35cc_0
atomicwrites 1.2.1 py37_0
attrs 18.2.0 py37h28b3542_0
babel 2.6.0 py37_0
backcall 0.1.0 py37_0
backports 1.0 py37_1
backports.os 0.1.1 py37_0
backports.shutil_get_terminal_size 1.0.0 py37_2
beautifulsoup4 4.6.3 py37_0
bitarray 0.8.3 py37h1de35cc_0
bkcharts 0.2 py37_0
blas 1.0 mkl
blaze 0.11.3 py37_0
bleach 3.0.2 py37_0
blosc 1.14.4 hd9629dc_0
bokeh 1.0.2 py37_0
boost-cpp 1.68.0 h6f8c590_1000 conda-forge
boto 2.49.0 py37_0
bottleneck 1.2.1 py37h1d22016_1
bzip2 1.0.6 h1de35cc_5
ca-certificates 2018.11.29 ha4d7672_0 conda-forge
cairo 1.14.12 h9d4d9ac_1005 conda-forge
certifi 2018.11.29 py37_1000 conda-forge
cffi 1.11.5 py37h6174b99_1
chardet 3.0.4 py37_1
click 7.0 py37_0
click-plugins 1.0.4 py_0 conda-forge
cligj 0.5.0 py_0 conda-forge
cloudpickle 0.6.1 py37_0
clyent 1.2.2 py37_1
colorama 0.4.1 py37_0
conda 4.6.6 py37_0 conda-forge
conda-build 3.17.6 py37_0
conda-env 2.6.0 1
conda-verify 3.1.1 py37_0
contextlib2 0.5.5 py37_0
cryptography 2.5 py37hdbc3d79_1 conda-forge
curl 7.63.0 heae2a1f_1000 conda-forge
cycler 0.10.0 py37_0
cython 0.29.2 py37h0a44026_0
cytoolz 0.9.0.1 py37h1de35cc_1
dask 1.0.0 py37_0
dask-core 1.0.0 py37_0
datashape 0.5.4 py37_1
dbus 1.13.2 h760590f_1
decorator 4.3.0 py37_0
defusedxml 0.5.0 py37_1
descartes 1.1.0 py_2 conda-forge
distributed 1.25.1 py37_0
docutils 0.14 py37_0
entrypoints 0.2.3 py37_2
et_xmlfile 1.0.1 py37_0
expat 2.2.6 h0a44026_0
fastcache 1.0.2 py37h1de35cc_2
filelock 3.0.10 py37_0
fiona 1.8.4 py37h0e3174d_1002 conda-forge
flask 1.0.2 py37_1
flask-cors 3.0.7 py37_0
fontconfig 2.13.1 h1e4e890_1000 conda-forge
freetype 2.9.1 hb4e5f40_0
freexl 1.0.5 h1de35cc_1002 conda-forge
future 0.17.1 py37_0
gdal 2.4.0 py37h0e3174d_1002 conda-forge
geopandas 0.4.0 pypi_0 pypi
geos 3.7.1 h0a44026_1000 conda-forge
geotiff 1.4.3 hce09ea4_1000 conda-forge
get_terminal_size 1.0.0 h7520d66_0
gettext 0.19.8.1 h15daf44_3
gevent 1.3.7 py37h1de35cc_1
giflib 5.1.4 h1de35cc_1001 conda-forge
glib 2.56.2 hd9629dc_0
glob2 0.6 py37_1
gmp 6.1.2 hb37e062_1
gmpy2 2.0.8 py37h6ef4df4_2
greenlet 0.4.15 py37h1de35cc_0
h5py 2.9.0 nompi_py37h35dc34b_1102 conda-forge
hdf4 4.2.13 0 conda-forge
hdf5 1.10.4 nompi_h646315f_1105 conda-forge
heapdict 1.0.0 py37_2
html5lib 1.0.1 py37_0
icu 58.2 h4b95b61_1
idna 2.8 py37_0
imageio 2.4.1 py37_0
imagesize 1.1.0 py37_0
importlib_metadata 0.6 py37_0
intel-openmp 2019.1 144
ipykernel 5.1.0 py37h39e3cac_0
ipython 7.2.0 py37h39e3cac_0
ipython_genutils 0.2.0 py37_0
ipywidgets 7.4.2 py37_0
isort 4.3.4 py37_0
itsdangerous 1.1.0 py37_0
jbig 2.1 h4d881f8_0
jdcal 1.4 py37_0
jedi 0.13.2 py37_0
jinja2 2.10 py37_0
jpeg 9c h1de35cc_1001 conda-forge
json-c 0.13.1 h1de35cc_1001 conda-forge
jsonschema 2.6.0 py37_0
jupyter 1.0.0 py37_7
jupyter_client 5.2.4 py37_0
jupyter_console 6.0.0 py37_0
jupyter_core 4.4.0 py37_0
jupyterlab 0.35.3 py37_0
jupyterlab_server 0.2.0 py37_0
kealib 1.4.10 hf5ed860_1002 conda-forge
keyring 17.0.0 py37_0
kiwisolver 1.0.1 py37h0a44026_0
krb5 1.16.2 h24a3359_1000 conda-forge
lazy-object-proxy 1.3.1 py37h1de35cc_2
libarchive 3.3.3 h786848e_5
libcurl 7.63.0 h76de61e_1000 conda-forge
libcxx 4.0.1 hcfea43d_1
libcxxabi 4.0.1 hcfea43d_1
libdap4 3.19.1 hae55d67_1000 conda-forge
libedit 3.1.20170329 hb402a30_2
libffi 3.2.1 h475c297_4
libgdal 2.4.0 h89caebc_1002 conda-forge
libgfortran 3.0.1 h93005f0_2
libiconv 1.15 hdd342a3_7
libkml 1.3.0 h71ee1b2_1009 conda-forge
liblief 0.9.0 h2a1bed3_0
libnetcdf 4.6.2 h6b88ef6_1001 conda-forge
libpng 1.6.35 ha441bb4_0
libpq 10.6 hbe1e24e_1000 conda-forge
libpysal 4.0.1 py_0 conda-forge
libsodium 1.0.16 h3efe00b_0
libspatialindex 1.8.5 h0a44026_1003 conda-forge
libspatialite 4.3.0a h0cd9627_1026 conda-forge
libssh2 1.8.0 hf30b1f0_1003 conda-forge
libtiff 4.0.9 hcb84e12_2
libxml2 2.9.8 hab757c2_1
libxslt 1.1.32 hb819dd2_0
llvmlite 0.26.0 py37h8c7ce04_0
locket 0.2.0 py37_1
lxml 4.2.5 py37hef8c89e_0
lz4-c 1.8.1.2 h1de35cc_0
lzo 2.10 h362108e_2
markupsafe 1.1.0 py37h1de35cc_0
matplotlib 3.0.2 py37h54f8f79_0
mccabe 0.6.1 py37_1
mgwr 2.0.1 py37_1000 conda-forge
mistune 0.8.4 py37h1de35cc_0
mkl 2019.1 144
mkl-service 1.1.2 py37hfbe908c_5
mkl_fft 1.0.6 py37h27c97d8_0
mkl_random 1.0.2 py37h27c97d8_0
more-itertools 4.3.0 py37_0
mpc 1.1.0 h6ef4df4_1
mpfr 4.0.1 h3018a27_3
mpmath 1.1.0 py37_0
msgpack-python 0.5.6 py37h04f5b5a_1
multipledispatch 0.6.0 py37_0
munch 2.3.2 py_0 conda-forge
navigator-updater 0.2.1 py37_0
nbconvert 5.4.0 py37_1
nbformat 4.4.0 py37_0
ncurses 6.1 h0a44026_1
networkx 2.2 py37_1
nltk 3.4 py37_1
nose 1.3.7 py37_2
notebook 5.7.4 py37_0
numba 0.41.0 py37h6440ff4_0
numexpr 2.6.8 py37h7413580_0
numpy 1.15.4 py37hacdab7b_0
numpy-base 1.15.4 py37h6575580_0
numpydoc 0.8.0 py37_0
odo 0.5.1 py37_0
olefile 0.46 py37_0
openjpeg 2.3.0 h3bf0609_1003 conda-forge
openpyxl 2.5.12 py37_0
openssl 1.0.2p h1de35cc_1002 conda-forge
packaging 18.0 py37_0
palettable 3.1.1 py_0 conda-forge
pandas 0.23.4 py37h6440ff4_0
pandoc 1.19.2.1 ha5e8f32_1
pandocfilters 1.4.2 py37_1
parso 0.3.1 py37_0
partd 0.3.9 py37_0
path.py 11.5.0 py37_0
pathlib2 2.3.3 py37_0
patsy 0.5.1 py37_0
pcre 8.42 h378b8a2_0
pep8 1.7.1 py37_0
pexpect 4.6.0 py37_0
pickleshare 0.7.5 py37_0
pillow 5.3.0 py37hb68e598_0
pip 18.1 py37_0
pixman 0.34.0 h1de35cc_1003 conda-forge
pkginfo 1.4.2 py37_1
pluggy 0.8.0 py37_0
ply 3.11 py37_0
poppler 0.67.0 hf4bf5f7_1002 conda-forge
poppler-data 0.4.9 1 conda-forge
postgresql 10.6 ha1bbaa7_1000 conda-forge
proj4 5.2.0 h1de35cc_1001 conda-forge
prometheus_client 0.5.0 py37_0
prompt_toolkit 2.0.7 py37_0
psutil 5.4.8 py37h1de35cc_0
psycopg2 2.7.7 py37hdbc3d79_0 conda-forge
ptyprocess 0.6.0 py37_0
py 1.7.0 py37_0
py-lief 0.9.0 py37hd4eaf27_0
pycodestyle 2.4.0 py37_0
pycosat 0.6.3 py37h1de35cc_0
pycparser 2.19 py37_0
pycrypto 2.6.1 py37h1de35cc_9
pycurl 7.43.0.2 py37hdbc3d79_0
pyflakes 2.0.0 py37_0
pygments 2.3.1 py37_0
pylint 2.2.2 py37_0
pyodbc 4.0.25 py37h0a44026_0
pyopenssl 18.0.0 py37_0
pyparsing 2.3.0 py37_0
pyproj 1.9.6 py37h9c430a6_1000 conda-forge
pyqt 5.9.2 py37h655552a_2
pysal 2.0.0 py_0 conda-forge
pysocks 1.6.8 py37_0
pytables 3.4.4 py37h0af8b44_1004 conda-forge
pytest 4.0.2 py37_0
pytest-arraydiff 0.3 py37h39e3cac_0
pytest-astropy 0.5.0 py37_0
pytest-doctestplus 0.2.0 py37_0
pytest-openfiles 0.3.1 py37_0
pytest-remotedata 0.3.1 py37_0
python 3.7.1 h145921a_1000 conda-forge
python-dateutil 2.7.5 py37_0
python-libarchive-c 2.8 py37_6
python.app 2 py37_9
pytz 2018.7 py37_0
pywavelets 1.0.1 py37h1d22016_0
pyyaml 3.13 py37h1de35cc_0
pyzmq 17.1.2 py37h1de35cc_0
qt 5.9.7 h468cd18_1
qtawesome 0.5.3 py37_0
qtconsole 4.4.3 py37_0
qtpy 1.5.2 py37_0
readline 7.0 h1de35cc_5
requests 2.21.0 py37_0
rope 0.11.0 py37_0
rtree 0.8.3 py37_1000 conda-forge
ruamel_yaml 0.15.46 py37h1de35cc_0
scikit-image 0.14.1 py37h0a44026_0
scikit-learn 0.20.1 py37h27c97d8_0
scipy 1.1.0 py37h1410ff5_2
seaborn 0.9.0 py37_0
send2trash 1.5.0 py37_0
setuptools 40.6.3 py37_0
shapely 1.6.4 py37h2bcc7ef_1002 conda-forge
simplegeneric 0.8.1 py37_2
singledispatch 3.4.0.3 py37_0
sip 4.19.8 py37h0a44026_0
six 1.12.0 py37_0
snappy 1.1.7 he62c110_3
snowballstemmer 1.2.1 py37_0
sortedcollections 1.0.1 py37_0
sortedcontainers 2.1.0 py37_0
spglm 1.0.6 py_1000 conda-forge
sphinx 1.8.2 py37_0
sphinxcontrib 1.0 py37_1
sphinxcontrib-websupport 1.1.0 py37_1
spreg 1.0.4 py_0 conda-forge
spyder 3.3.2 py37_0
spyder-kernels 0.3.0 py37_0
sqlalchemy 1.2.15 py37h1de35cc_0
sqlite 3.26.0 ha441bb4_0
statsmodels 0.9.0 py37h1d22016_0
sympy 1.3 py37_0
tblib 1.3.2 py37_0
terminado 0.8.1 py37_1
testpath 0.4.2 py37_0
tk 8.6.8 ha441bb4_0
toolz 0.9.0 py37_0
tornado 5.1.1 py37h1de35cc_0
tqdm 4.28.1 py37h28b3542_0
traitlets 4.3.2 py37_0
tzcode 2018g h1de35cc_1001 conda-forge
unicodecsv 0.14.1 py37_0
unixodbc 2.3.7 h1de35cc_0
urllib3 1.24.1 py37_0
wcwidth 0.1.7 py37_0
webencodings 0.5.1 py37_1
werkzeug 0.14.1 py37_0
wheel 0.32.3 py37_0
widgetsnbextension 3.4.2 py37_0
wrapt 1.10.11 py37h1de35cc_2
wurlitzer 1.0.2 py37_0
xerces-c 3.2.2 h44e365a_1001 conda-forge
xlrd 1.2.0 py37_0
xlsxwriter 1.1.2 py37_0
xlwings 0.15.1 py37_0
xlwt 1.3.0 py37_0
xz 5.2.4 h1de35cc_4
yaml 0.1.7 hc338f04_2
zeromq 4.2.5 h0a44026_1
zict 0.1.3 py37_0
zlib 1.2.11 h1de35cc_3
zstd 1.3.7 h5bba6e5_0
I get around this problem by creating a new environment and ensuring my gdal install is from the conda-forge channel by setting the channel_priority to strict:
conda create -n myenv python=3.7
conda activate myenv
conda config --set channel_priority strict
conda install -c conda-forge gdal poppler pyproj
Perhaps installing poppler and pyproj in the same command is extraneous, but I have had problems with them as well. A clean GDAL install is priceless for all the nice new tools like geopandas, fiona, and rasterio!

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