I want to change my model architecture a bit on the LSTM so it accepts the same exact flattened inputs the full connected approach does.
Working Dnn model from Keras examples
import keras
from keras.models import Sequential
from keras.layers import Dense, Dropout
from keras.utils import to_categorical
# import the data
from keras.datasets import mnist
# read the data
(x_train, y_train), (x_test, y_test) = mnist.load_data()
num_pixels = x_train.shape[1] * x_train.shape[2] # find size of one-dimensional vector
x_train = x_train.reshape(x_train.shape[0], num_pixels).astype('float32') # flatten training images
x_test = x_test.reshape(x_test.shape[0], num_pixels).astype('float32') # flatten test images
# normalize inputs from 0-255 to 0-1
x_train = x_train / 255
x_test = x_test / 255
# one hot encode outputs
y_train = to_categorical(y_train)
y_test = to_categorical(y_test)
num_classes = y_test.shape[1]
print(num_classes)
# define classification model
def classification_model():
# create model
model = Sequential()
model.add(Dense(num_pixels, activation='relu', input_shape=(num_pixels,)))
model.add(Dense(100, activation='relu'))
model.add(Dense(num_classes, activation='softmax'))
# compile model
model.compile(optimizer='adam', loss='categorical_crossentropy', metrics=['accuracy'])
return model
# build the model
model = classification_model()
# fit the model
model.fit(x_train, y_train, validation_data=(x_test, y_test), epochs=10, verbose=2)
# evaluate the model
scores = model.evaluate(x_test, y_test, verbose=0)
Same problem but trying LSTM (syntax error still)
def kaggle_LSTM_model():
model = Sequential()
model.add(LSTM(128, input_shape=(x_train.shape[1:]), activation='relu', return_sequences=True))
# What does return_sequences=True do?
model.add(Dropout(0.2))
model.add(Dense(32, activation='relu'))
model.add(Dropout(0.2))
model.add(Dense(10, activation='softmax'))
opt = tf.keras.optimizers.Adam(lr=1e-3, decay=1e-5)
model.compile(loss='sparse_categorical_crossentropy', optimizer=opt,
metrics=['accuracy'])
return model
model_kaggle_LSTM = kaggle_LSTM_model()
# fit the model
model_kaggle_LSTM.fit(x_train, y_train, validation_data=(x_test, y_test), epochs=10, verbose=2)
# evaluate the model
scores = model_kaggle_LSTM.evaluate(x_test, y_test, verbose=0)
Problem is here:
model.add(LSTM(128, input_shape=(x_train.shape[1:]), activation='relu', return_sequences=True))
ValueError: Input 0 is incompatible with layer lstm_17: expected
ndim=3, found ndim=2
If I go back and don't flatten x_train and y_train, it works. However, I'd like this to be "just another model choice" that feeds off the same pre-processed input. I thought passing shape[1:] would work as that it the real flattened input_shape. I'm sure it's something easy I'm missing about the dimensionality, but I couldn't get it after an hour of twiddling and debugging, although did figure out not flattening the 28x28 to 784 works, but I don't understand why it works. Thanks a lot!
For bonus points, an example of how to do either DNN or LSTM in either 1D (784,) or 2D (28, 28) would be the best.
RNN layers such as LSTM are meant for sequence processing (i.e. a series of vectors which their order of appearance matters). You can look at an image from top to bottom, and consider each row of pixels as a vector. Therefore, the image would be a sequence of vectors and can be fed to the RNN layer. Therefore, according to this description, you should expect that the RNN layer take an input of shape (sequence_length, number_of_features). That's why when you feed the images to the LSTM network in their original shape, i.e. (28,28), it works.
Now if you insist on feeding the LSTM model the flattened image, i.e. with shape (784,), you have at least two options: either you can consider this as a sequence of length one, i.e. (1, 748), which does not make much sense; or you can add a Reshape layer to your model to reshape back the input to its original shape suitable for the input shape of a LSTM layer, like this:
from keras.layers import Reshape
def kaggle_LSTM_model():
model = Sequential()
model.add(Reshape((28,28), input_shape=x_train.shape[1:]))
# the rest is the same...
Related
Okay so I'm pretty new to deep learning and have a very basic doubt. I have an input data with an array containing 255 data (Araay shape (255,)) in epochs_data and their corresponding labels in new_labels (Array shape (255,)).
I split the data using the following code:
from sklearn.model_selection import train_test_split
X_train, X_test, y_train, y_test = train_test_split(epochs_data, new_labels, test_size = 0.2, random_state=30)
I'm using a sequential model:
from keras.models import Sequential
from keras import layers
from keras.layers import Dense, Activation, Flatten
model = Sequential()
I know how to code for the hidden layers and output layer:
model.add(Dense(500, activation='relu')) #Hidden Layer
model.add(Dense(2, activation='softmax')) #Output Layer
But I don't know how to code layer for input with the input_shape specified. The X_train is the input.It's an array of shape (180,). Also tell me how to code the model.fit() for the same. Any help is appreciated.
You have to copy this line before the hidden layer. You can add the activation function that you want. Finally, as you can see this line represent both the input layer and the 1° hidden layer (you have to choose the n° of neuron (I put 100) )
model.add(Dense(100, input_shape = (X_train.shape[1],))
EDIT:
Before fitting your model you have to configure your model with this line:
model.compile(loss = 'mse', optimizer = 'Adam', metrics = ['mse'])
So you have to choose a metric that in this case is Mean Squarred Error and an optimizer like Adam, Adamax, ect.
Then you can fit your model choosing the data (X,Y), n° epochs, val_split and the batch size.
history = model.fit(X_train, y_train, epochs = 200,
validation_split = 0.1, batch_size=250)
I am getting into Convolutional Neural Networks and want to create one for MNIST data. Whenever I add a convolutional Layer to my CNN, I get an error:
Input 0 is incompatible with layer conv2d_4: expected ndim=4, found ndim=5
I have attemped to reshape X_Train data set but was not successful
I tried to add a flatten layer first but that returns this error:
Input 0 is incompatible with layer conv2d_5: expected ndim=4, found ndim=2
import keras
from keras.preprocessing.image import ImageDataGenerator
from keras.models import Sequential
from keras.layers import Convolution2D
from keras.layers import Flatten, Dense, Dropout
img_width, img_height = 28, 28
mnist = keras.datasets.mnist
(X_train, Y_train), (X_test, Y_test) = mnist.load_data()
(X_train, y_train), (X_test, y_test) = mnist.load_data()
X_train = keras.utils.normalize(X_train, axis=1) #Normalizes from 0-1 (originally each pixel is valued 0-255)
X_test = keras.utils.normalize(X_test, axis=1) #Normalizes from 0-1 (originally each pixel is valued 0-255)
Y_train = keras.utils.to_categorical(Y_train) #Reshapes to allow ytrain to work with x train
Y_test = keras.utils.to_categorical(Y_test)
from sklearn import preprocessing
lb = preprocessing.LabelBinarizer()
Y_train = lb.fit_transform(Y_train)
Y_test = lb.fit_transform(Y_test)
#Model
model = Sequential()
model.add(Flatten())
model.add(Convolution2D(16, 5, 5, activation='relu', input_shape=(1,img_width, img_height, 1)))
model.add(Dense(128, activation='relu'))
model.add(Dense(128, activation='relu'))
model.add(Dropout(.2))
model.add(Dense(64, activation='relu'))
model.add(Dense(10, activation='softmax'))
model.compile(optimizer = 'adam',
loss='categorical_crossentropy',
metrics=['accuracy'])
model.fit(X_train, Y_train, epochs=3, verbose=2)
val_loss, val_acc = model.evaluate(X_test, Y_test) #Check to see if model fits test
print(val_loss, val_acc)
If I comment out the Convolutional layer, it works very well (accuracy>95%), but I am planning on making a more complex neural network that requires Convolution in the future and this is my starting point
Keras is looking for a tensor of dimension 4 but it's getting ndim as number of dimension as 2.
first make sure you kernel size in Conv2D layer is in parenthesis
model.add(Convolution2D(32, (3, 3), activation='relu', input_shape=(img_height, img_height, 1)))
Second you need to reshape the X_train, X_test variable as Conv2D layer is expecting a tensor input.
X_train = X_train.reshape(-1,28, 28, 1) #Reshape for CNN - should work!!
X_test = X_test.reshape(-1,28, 28, 1)
model.fit(X_train, Y_train, epochs=3, verbose=2)
For more information about Conv2D you can look into Keras Documentation here
Hope this helps.
There are two issues in your code.
You are encoding your labels two times, once using to_categorical, and another time using LabelBinarizer. The latter is no needed here, so just encode your labels into categorical once, using to_categorical.
2.- Your input shape is incorrect, it should be (28, 28, 1).
Also you should add a Flatten layer after the convolutional layers so the Dense layer works properly.
From the official example in Keras docs, the stacked LSTM classifier is trained using categorical_crossentropy as a loss function, as expected. https://keras.io/getting-started/sequential-model-guide/#examples
But the y_train values are seeded using numpy.random.random() which outputs real numbers, versus 0,1 binary classification ( which is typical )
Are the y_train values being promoted to 0,1 values under the hood?
Can you even train this loss function against real values between 0,1 ?
How is accuracy then calculated ?
Confusing.. no?
from keras.models import Sequential
from keras.layers import LSTM, Dense
import numpy as np
data_dim = 16
timesteps = 8
num_classes = 10
# expected input data shape: (batch_size, timesteps, data_dim)
model = Sequential()
model.add(LSTM(32, return_sequences=True,
input_shape=(timesteps, data_dim))) # returns a sequence of vectors of dimension 32
model.add(LSTM(32, return_sequences=True)) # returns a sequence of vectors of dimension 32
model.add(LSTM(32)) # return a single vector of dimension 32
model.add(Dense(10, activation='softmax'))
model.compile(loss='categorical_crossentropy',
optimizer='rmsprop',
metrics=['accuracy'])
# Generate dummy training data
x_train = np.random.random((1000, timesteps, data_dim))
y_train = np.random.random((1000, num_classes))
# Generate dummy validation data
x_val = np.random.random((100, timesteps, data_dim))
y_val = np.random.random((100, num_classes))
model.fit(x_train, y_train,
batch_size=64, epochs=5,
validation_data=(x_val, y_val))
For this example, the y_train and y_test are not the one-hot encoding anymore, but the probabilities of each classes. So it is still applicable for cross-entropy. And we can treat the one-hot encoding as the special case of the probabilities vector.
y_train[0]
array([0.30172708, 0.69581121, 0.23264601, 0.87881279, 0.46294832,
0.5876406 , 0.16881395, 0.38856604, 0.00193709, 0.80681196])
I am kind of new to deep learning and I have been trying to create a simple sentiment analyzer using deep learning methods for natural language processing and using the Reuters dataset. Here is my code:
import numpy as np
from keras.datasets import reuters
from keras.preprocessing.text import Tokenizer
from keras.models import Sequential
from keras.layers import Dense, Dropout, GRU
from keras.utils import np_utils
max_length=3000
vocab_size=100000
epochs=10
batch_size=32
validation_split=0.2
(x_train, y_train), (x_test, y_test) = reuters.load_data(path="reuters.npz",
num_words=vocab_size,
skip_top=5,
maxlen=None,
test_split=0.2,
seed=113,
start_char=1,
oov_char=2,
index_from=3)
tokenizer = Tokenizer(num_words=max_length)
x_train = tokenizer.sequences_to_matrix(x_train, mode='binary')
x_test = tokenizer.sequences_to_matrix(x_test, mode='binary')
y_train = np_utils.to_categorical(y_train, 50)
y_test = np_utils.to_categorical(y_test, 50)
model = Sequential()
model.add(GRU(50, input_shape = (49,1), return_sequences = True))
model.add(Dropout(0.2))
model.add(Dense(256, input_shape=(max_length,), activation='relu'))
model.add(Dropout(0.2))
model.add(Dense(50, activation='softmax'))
model.compile(optimizer='adam', loss='categorical_crossentropy', metrics=['acc'])
model.summary()
history = model.fit(x_train, y_train, epochs=epochs, batch_size=batch_size, validation_split=validation_split)
score = model.evaluate(x_test, y_test)
print('Test Accuracy:', round(score[1]*100,2))
What I do not understand is why, every time I try to use a GRU or LSTM cell instead of a Dense one, I get this error:
ValueError: Error when checking input: expected gru_1_input to have 3
dimensions, but got array with shape (8982, 3000)
I have seen online that adding return_sequences = True could solve the issue, but as you can see, the issue remains in my case.
What should I do in this case?
The problem is that the shape of x_train is (8982, 3000) so it means that (considering the preprocessing stage) there are 8982 sentences encoded as one-hot vectors with vocab size of 3000. On the other hand a GRU (or LSTM) layer accepts a sequence as input and therefore its input shape should be (batch_size, num_timesteps or sequence_length, feature_size). Currently the features you have are the presence (1) or absence (0) of a particular word in a sentence. So to make it work with GRU you need to add a third dimension to x_train and x_test:
x_train = np.expand_dims(x_train, axis=-1)
x_test = np.expand_dims(x_test, axis=-1)
and then remove that return_sequences=True and change the input shape of GRU to input_shape=(3000,1). This way you are telling the GRU layer that you are processing sequences of length 3000 where each element consists of one single feature. (As a side note I think you should pass the vocab_size to num_words argument of Tokenizer. That indicates the number of words in vocabulary. Instead, pass max_length to maxlen argument of load_data which limits the length of a sentence.)
However, I think you may get better results if you use an Embedding layer as the first layer and before the GRU layer. That's because currently the way you encode sentences does not take into account the order of words in a sentence (it just cares about their existence). Therefore, feeding GRU or LSTM layers, which relies on the order of elements in a sequence, with this representation does not make sense.
I am trying to implement CNN for a classification task. I want to see the how the weights are being optimized at each epoch. To do so, I need the values of penultimate layer. Also, I will hard code the last layer and backpropagation myself. Please recommend APIs also which which will be helpful.
Edit: I have added a code from keras examples. Looking forward to edit it.
This link provide some hint. I have mentioned the layer after which I require the output.
from __future__ import print_function
from keras.preprocessing import sequence
from keras.models import Sequential
from keras.layers import Dense, Dropout, Activation
from keras.layers import Embedding
from keras.layers import Conv1D, GlobalMaxPooling1D
from keras.datasets import imdb
# set parameters:
max_features = 5000
maxlen = 400
batch_size = 100
embedding_dims = 50
filters = 250
kernel_size = 3
hidden_dims = 250
epochs = 100
print('Loading data...')
(x_train, y_train), (x_test, y_test) = imdb.load_data(num_words=max_features)
print(len(x_train), 'train sequences')
print(len(x_test), 'test sequences')
print('Pad sequences (samples x time)')
x_train = sequence.pad_sequences(x_train, maxlen=maxlen)
x_test = sequence.pad_sequences(x_test, maxlen=maxlen)
print('x_train shape:', x_train.shape)
print('x_test shape:', x_test.shape)
print('Build model...')
model = Sequential()
# we start off with an efficient embedding layer which maps
# our vocab indices into embedding_dims dimensions
model.add(Embedding(max_features,
embedding_dims,
input_length=maxlen))
model.add(Dropout(0.2))
# we add a Convolution1D, which will learn filters
# word group filters of size filter_length:
model.add(Conv1D(filters,
kernel_size,
padding='valid',
activation='relu',
strides=1))
# we use max pooling:
model.add(GlobalMaxPooling1D())
# We add a vanilla hidden layer:
model.add(Dense(hidden_dims))
model.add(Dropout(0.2))
model.add(Activation('relu'))
# We project onto a single unit output layer, and squash it with a sigmoid:
model.add(Dense(1))
model.add(Activation('sigmoid')) #<======== I need output after this.
model.compile(loss='binary_crossentropy',
optimizer='adam',
metrics=['accuracy'])
model.fit(x_train, y_train,
batch_size=batch_size,
epochs=epochs,
validation_data=(x_test, y_test))
You can get the individual layers of your model like this:
num_layer = 7 # Dense(1) layer
layer = model.layers[num_layer]
I want to see the how the weights are being optimized at each epoch.
To get the weights of the layer use layer.get_weights() like this:
w, b = layer.get_weights() # weights and bias of Dense(1)
I need the values of penultimate layer.
To get the value of the evaluation of the last layer use model.predict():
prediction = model.predict(x_test)
To get the evaluation of any other layer do it with tensorflow like this:
input = tf.placeholder(tf.float32) # Create input placeholder
layer_output = layer(input) # create layer output operation
init_op = tf.global_variables_initializer() # initialize variables
with tf.Session() as sess:
sess.run(init_op)
# evaluate layer output
output = sess.run(layer_output, feed_dict = {input: x_test})
print(output)