How to create a shared library using gcc? - python

I want to use pytwed package, but instruction says to produce a shared library loadable in python2 following:
gcc -std=c99 twed_wrap.c -lm -lpython2.7 -shared -o twed.so -fPIC -I /usr/lib64/python2.7/site-packages/numpy/core/include/ -I /usr/include/python2.7
I am doing it for the first time, so I am not able to understand the whole syntax, what it is doing and what all path it's asking about?
Can some one help?
Thanks for your time and patience.

Related

Calling cv::cuda::HOG from python

I need to access the cuda modules of opencv in C++ from python. I tried wrapping the c++ functions using Boost however I get the following error.
ImportError: ../build/lib.linux-x86_64-2.7/pyBoostHOG.so: undefined
symbol: _ZN2cv4cuda6Stream4NullEv.
Is there any way by which I can access the opencv cuda modules from python?
Thanks in advance..
I was facing the same error. And this is how I was compiling the .so file:
g++ `pkg-config opencv4 --cflags --libs` -fPIC -c flow.cpp
g++ -Wall -O3 -shared -o flow.so flow.o `pkg-config opencv4 --cflags --libs`
The error was resolved when I changed my make file to the following:
g++ `pkg-config opencv4 --cflags --libs` -fPIC -c flow.cpp
g++ -Wall -O3 -shared flow.o -o flow.so `pkg-config opencv4 --cflags --libs`
I had the same error.
I figured out that I must include opencv2/core/cuda.hpp file (symbol _ZN2cv4cuda6Stream4NullEv reffers to: cv::cuda::Stream::Null()
But this doesn't solve the problem, because when I tried to make wrap thought swig and include these file, new error:
.../include/opencv2/core/cuda.hpp:317: Error: Syntax error in input(1).
is displayed.
Compiling another program using cv::cuda::Stream::Null() cause not error.

Cython: Compiling and Cannot Find Library Mac OSX 10.12

I am just getting started with Cython and am trying to compile a "Hello World" script. I am trying to use gcc -Os /User/Documents/Python/Test\ Python/helloCopy.c -I/Library/Frameworks/Python.framework/Versions/3.5/include/python3.5m -l, but I don't know what to add after the -l. Other forum pages say to "include -lpython2.7 (or whatever version of Python you're using) on the linker command-line" but that produces ld: library not found for -lpython3.5
clang: error: linker command failed with exit code 1 (use -v to see invocation)
Should I be directing the -l to a particular folder?
I do not know what resource you're using, but this does not say anything about a -l flag. It suggests
cython -a helloCopy.pyx
This creates a yourmod.c file, and the -a switch produces an annotated html file of the source code. Pass the -h flag for a complete list of supported flags.
gcc -shared -pthread -fPIC -fwrapv -O2 -Wall -fno-strict-aliasing -I/usr/include/python2.7 -o helloCopy.so helloCopy.c
(Linux)
On macOS I would try to compile with
gcc -I/usr/bin/python -o helloCopy.so helloCopy.c
to use the standard version of Python.

Fatal Python error when using SWIG under OSX

I have troubles using a Python interface generated with SWIG (I have OSX 10.11.12). After compiling and linking everything together as such:
swig -python erk_integrator.i
gcc -c -fPIC -O3 model.c auxiliary_functions.c timing_functions.c
gcc -c -fPIC -O3 erk_integrator.c erk_integrator_wrap.c -I. -I/usr/local/include/python2.7
gcc -lpython -dynamiclib model.o erk_integrator.o erk_integrator_wrap.o auxiliary_functions.o timing_functions.o -o _erk_integrator.so
I try a test script, but Python throws a fatal error:
/usr/local/bin/python test_erk.py
Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6
But when I run
/System/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 test_erk.py
everything works as it should. However, I need to use /usr/local/bin/python (from Homebrew) instead of the system Python.
I think something goes wrong in the linking step. Many thanks for helping!
This blog post helped me solve it: blog.tim-smith.us/2015/09/python-extension-modules-os-x
It turns out on OSX you need
-undefined dynamic_lookup
instead of
-lpython

g++ linking and swig

I have a cpp file with functions that I'm using in python with SWIG. I use the following commands to compile the source and create the file to use with python.
swig -c++ -python mini.i
g++ -O2 -c mini.cpp -I/usr/include/python2.4 -I/usr/lib/python2.4
g++ -O2 -c mini_wrap.cxx -I/usr/include/python2.4 -I/usr/lib/python2.4
g++ -shared mini.o mini_wrap.o -o _mini.so
I'm trying now to use GSL in my source cpp source file. If I was just compiling the GSL file I would do
g++ -lgsl -lgslcblas -lm -o mini.o mini.cpp
I've tried adding the -lgsl -lgslcblas -lm to the lines for the swig compile but I get
g++: -lgsl: linker input file unused because linking not done
g++: -lgslcblas: linker input file unused because linking not done
g++: -lm: linker input file unused because linking not done
How can I link the gsl libraries? Thanks
Swig does no linking, as the warning message states. Put the -lgsl etc. on the link command, which is your last g++ command.

how to link python static library with my c++ program

I am implementing a C++ program that uses python/C++ Extensions. As of now I am explicitly linking my program to python static library I compiled. I am wondering is there any way to link my program with system installed python(i mean the default python installation that comes with linux)
Yes. There is a command line utility called python-config:
Usage: /usr/bin/python-config [--prefix|--exec-prefix|--includes|--libs|--cflags|--ldflags|--help]
For linkage purposes, you have to invoke it with --ldflags parameter. It will print a list of flags you have to pass to the linker (or g++) in order to link with system installed python libraries:
$ python-config --ldflags
-L/usr/lib/python2.6/config -lpthread -ldl -lutil -lm -lpython2.6
It also can give you flags to compilation with --cflags parameter:
$ python-config --cflags
-I/usr/include/python2.6 -I/usr/include/python2.6 -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes
Say you have a test program in test.cpp file, then you can do something like this in order to compile and link:
g++ $(python-config --cflags) -o test $(python-config --ldflags) ./test.cpp
That will link your program with shared libraries. If you want to go static, you can pass -static option to the linker. But that will link with all static stuff, including a runtime. If you want to go just with static python, you have to find those libraries yourself. One of the option is to parse python-config --ldflags output and look for libraries with .a extensions. But I'd rather stick to all dynamic or all static.
Hope it helps. Good luck!

Categories

Resources