Cannot open file in write mode after copyfile - python

I am required to edit the file that's just created using copyFile().
However, readlines() always fails if the file is opened in either 'w' mode or 'w+' or in 'a' mode.
copyfile(fileObj.file_to_open, fileObj._copyToFileName)
with open(fileObj._copyToFileName, 'w') as thisFile:
lines = thisFile.readlines()
I am able to readlines() if I leave it to default mode (read mode).
Why would the open with write mode be a problem?

You're looking for the r+ or a+ mode, which allows read and write operations to files (see more).
With r+, the position is initially at the beginning, but reading it once will push it towards the end, allowing you to append. With a+, the position is initially at the end.
With f.seek(0) you can move the reading position to the beginning.
with open("filename", "r+") as f:
text = f.read()
f.seek(0)
# reread if required here

When you open a file in write mode, Python truncates the file. If you want to open the file for reading/writing without this, you need to use open(filename, 'r+').
Also make sure that you keep track of where in the file the cursor is located because you may overwrite your data. Use file.seek(offset) to control this.
Check the Python open documentation for more details.

Related

Convert Multiple CSVs into a Single XML with Python [duplicate]

How do I append to a file instead of overwriting it?
Set the mode in open() to "a" (append) instead of "w" (write):
with open("test.txt", "a") as myfile:
myfile.write("appended text")
The documentation lists all the available modes.
You need to open the file in append mode, by setting "a" or "ab" as the mode. See open().
When you open with "a" mode, the write position will always be at the end of the file (an append). You can open with "a+" to allow reading, seek backwards and read (but all writes will still be at the end of the file!).
Example:
>>> with open('test1','wb') as f:
f.write('test')
>>> with open('test1','ab') as f:
f.write('koko')
>>> with open('test1','rb') as f:
f.read()
'testkoko'
Note: Using 'a' is not the same as opening with 'w' and seeking to the end of the file - consider what might happen if another program opened the file and started writing between the seek and the write. On some operating systems, opening the file with 'a' guarantees that all your following writes will be appended atomically to the end of the file (even as the file grows by other writes).
A few more details about how the "a" mode operates (tested on Linux only). Even if you seek back, every write will append to the end of the file:
>>> f = open('test','a+') # Not using 'with' just to simplify the example REPL session
>>> f.write('hi')
>>> f.seek(0)
>>> f.read()
'hi'
>>> f.seek(0)
>>> f.write('bye') # Will still append despite the seek(0)!
>>> f.seek(0)
>>> f.read()
'hibye'
In fact, the fopen manpage states:
Opening a file in append mode (a as the first character of mode)
causes all subsequent write operations to this stream to occur at
end-of-file, as if preceded the call:
fseek(stream, 0, SEEK_END);
Old simplified answer (not using with):
Example: (in a real program use with to close the file - see the documentation)
>>> open("test","wb").write("test")
>>> open("test","a+b").write("koko")
>>> open("test","rb").read()
'testkoko'
I always do this,
f = open('filename.txt', 'a')
f.write("stuff")
f.close()
It's simple, but very useful.
Python has many variations off of the main three modes, these three modes are:
'w' write text
'r' read text
'a' append text
So to append to a file it's as easy as:
f = open('filename.txt', 'a')
f.write('whatever you want to write here (in append mode) here.')
Then there are the modes that just make your code fewer lines:
'r+' read + write text
'w+' read + write text
'a+' append + read text
Finally, there are the modes of reading/writing in binary format:
'rb' read binary
'wb' write binary
'ab' append binary
'rb+' read + write binary
'wb+' read + write binary
'ab+' append + read binary
You probably want to pass "a" as the mode argument. See the docs for open().
with open("foo", "a") as f:
f.write("cool beans...")
There are other permutations of the mode argument for updating (+), truncating (w) and binary (b) mode but starting with just "a" is your best bet.
You can also do it with print instead of write:
with open('test.txt', 'a') as f:
print('appended text', file=f)
If test.txt doesn't exist, it will be created...
when we using this line open(filename, "a"), that a indicates the appending the file, that means allow to insert extra data to the existing file.
You can just use this following lines to append the text in your file
def FileSave(filename,content):
with open(filename, "a") as myfile:
myfile.write(content)
FileSave("test.txt","test1 \n")
FileSave("test.txt","test2 \n")
The 'a' parameter signifies append mode. If you don't want to use with open each time, you can easily write a function to do it for you:
def append(txt='\nFunction Successfully Executed', file):
with open(file, 'a') as f:
f.write(txt)
If you want to write somewhere else other than the end, you can use 'r+'†:
import os
with open(file, 'r+') as f:
f.seek(0, os.SEEK_END)
f.write("text to add")
Finally, the 'w+' parameter grants even more freedom. Specifically, it allows you to create the file if it doesn't exist, as well as empty the contents of a file that currently exists.
† Credit for this function goes to #Primusa
You can also open the file in r+ mode and then set the file position to the end of the file.
import os
with open('text.txt', 'r+') as f:
f.seek(0, os.SEEK_END)
f.write("text to add")
Opening the file in r+ mode will let you write to other file positions besides the end, while a and a+ force writing to the end.
if you want to append to a file
with open("test.txt", "a") as myfile:
myfile.write("append me")
We declared the variable myfile to open a file named test.txt. Open takes 2 arguments, the file that we want to open and a string that represents the kinds of permission or operation we want to do on the file
here is file mode options
Mode Description
'r' This is the default mode. It Opens file for reading.
'w' This Mode Opens file for writing.
If file does not exist, it creates a new file.
If file exists it truncates the file.
'x' Creates a new file. If file already exists, the operation fails.
'a' Open file in append mode.
If file does not exist, it creates a new file.
't' This is the default mode. It opens in text mode.
'b' This opens in binary mode.
'+' This will open a file for reading and writing (updating)
If multiple processes are writing to the file, you must use append mode or the data will be scrambled. Append mode will make the operating system put every write, at the end of the file irrespective of where the writer thinks his position in the file is. This is a common issue for multi-process services like nginx or apache where multiple instances of the same process, are writing to the same log
file. Consider what happens if you try to seek, then write:
Example does not work well with multiple processes:
f = open("logfile", "w"); f.seek(0, os.SEEK_END); f.write("data to write");
writer1: seek to end of file. position 1000 (for example)
writer2: seek to end of file. position 1000
writer2: write data at position 1000 end of file is now 1000 + length of data.
writer1: write data at position 1000 writer1's data overwrites writer2's data.
By using append mode, the operating system will place any write at the end of the file.
f = open("logfile", "a"); f.seek(0, os.SEEK_END); f.write("data to write");
Append most does not mean, "open file, go to end of the file once after opening it". It means, "open file, every write I do will be at the end of the file".
WARNING: For this to work you must write all your record in one shot, in one write call. If you split the data between multiple writes, other writers can and will get their writes in between yours and mangle your data.
Sometimes, beginners have this problem because they attempt to open and write to a file in a loop:
for item in my_data:
with open('results.txt', 'w') as f:
f.write(some_calculation(item))
The problem is that every time the file is opened for writing, it will be truncated (cleared out).
We can solve this by opening in append mode instead; but in cases like this, it will normally be better to solve the problem by inverting the logic. If the file is opened only once, then it won't get overwritten each time; and we can keep writing to it as long as it is open - we don't have to re-open it for each write (it would be pointless for Python to make things work that way, since it would add to the required code for no benefit).
Thus:
with open('results.txt', 'w') as f:
for item in my_data:
f.write(some_calculation(item))
The simplest way to append more text to the end of a file would be to use:
with open('/path/to/file', 'a+') as file:
file.write("Additions to file")
file.close()
The a+ in the open(...) statement instructs to open the file in append mode and allows read and write access.
It is also always good practice to use file.close() to close any files that you have opened once you are done using them.

Copy file data using python [duplicate]

How do I append to a file instead of overwriting it?
Set the mode in open() to "a" (append) instead of "w" (write):
with open("test.txt", "a") as myfile:
myfile.write("appended text")
The documentation lists all the available modes.
You need to open the file in append mode, by setting "a" or "ab" as the mode. See open().
When you open with "a" mode, the write position will always be at the end of the file (an append). You can open with "a+" to allow reading, seek backwards and read (but all writes will still be at the end of the file!).
Example:
>>> with open('test1','wb') as f:
f.write('test')
>>> with open('test1','ab') as f:
f.write('koko')
>>> with open('test1','rb') as f:
f.read()
'testkoko'
Note: Using 'a' is not the same as opening with 'w' and seeking to the end of the file - consider what might happen if another program opened the file and started writing between the seek and the write. On some operating systems, opening the file with 'a' guarantees that all your following writes will be appended atomically to the end of the file (even as the file grows by other writes).
A few more details about how the "a" mode operates (tested on Linux only). Even if you seek back, every write will append to the end of the file:
>>> f = open('test','a+') # Not using 'with' just to simplify the example REPL session
>>> f.write('hi')
>>> f.seek(0)
>>> f.read()
'hi'
>>> f.seek(0)
>>> f.write('bye') # Will still append despite the seek(0)!
>>> f.seek(0)
>>> f.read()
'hibye'
In fact, the fopen manpage states:
Opening a file in append mode (a as the first character of mode)
causes all subsequent write operations to this stream to occur at
end-of-file, as if preceded the call:
fseek(stream, 0, SEEK_END);
Old simplified answer (not using with):
Example: (in a real program use with to close the file - see the documentation)
>>> open("test","wb").write("test")
>>> open("test","a+b").write("koko")
>>> open("test","rb").read()
'testkoko'
I always do this,
f = open('filename.txt', 'a')
f.write("stuff")
f.close()
It's simple, but very useful.
Python has many variations off of the main three modes, these three modes are:
'w' write text
'r' read text
'a' append text
So to append to a file it's as easy as:
f = open('filename.txt', 'a')
f.write('whatever you want to write here (in append mode) here.')
Then there are the modes that just make your code fewer lines:
'r+' read + write text
'w+' read + write text
'a+' append + read text
Finally, there are the modes of reading/writing in binary format:
'rb' read binary
'wb' write binary
'ab' append binary
'rb+' read + write binary
'wb+' read + write binary
'ab+' append + read binary
You probably want to pass "a" as the mode argument. See the docs for open().
with open("foo", "a") as f:
f.write("cool beans...")
There are other permutations of the mode argument for updating (+), truncating (w) and binary (b) mode but starting with just "a" is your best bet.
You can also do it with print instead of write:
with open('test.txt', 'a') as f:
print('appended text', file=f)
If test.txt doesn't exist, it will be created...
when we using this line open(filename, "a"), that a indicates the appending the file, that means allow to insert extra data to the existing file.
You can just use this following lines to append the text in your file
def FileSave(filename,content):
with open(filename, "a") as myfile:
myfile.write(content)
FileSave("test.txt","test1 \n")
FileSave("test.txt","test2 \n")
The 'a' parameter signifies append mode. If you don't want to use with open each time, you can easily write a function to do it for you:
def append(txt='\nFunction Successfully Executed', file):
with open(file, 'a') as f:
f.write(txt)
If you want to write somewhere else other than the end, you can use 'r+'†:
import os
with open(file, 'r+') as f:
f.seek(0, os.SEEK_END)
f.write("text to add")
Finally, the 'w+' parameter grants even more freedom. Specifically, it allows you to create the file if it doesn't exist, as well as empty the contents of a file that currently exists.
† Credit for this function goes to #Primusa
You can also open the file in r+ mode and then set the file position to the end of the file.
import os
with open('text.txt', 'r+') as f:
f.seek(0, os.SEEK_END)
f.write("text to add")
Opening the file in r+ mode will let you write to other file positions besides the end, while a and a+ force writing to the end.
if you want to append to a file
with open("test.txt", "a") as myfile:
myfile.write("append me")
We declared the variable myfile to open a file named test.txt. Open takes 2 arguments, the file that we want to open and a string that represents the kinds of permission or operation we want to do on the file
here is file mode options
Mode Description
'r' This is the default mode. It Opens file for reading.
'w' This Mode Opens file for writing.
If file does not exist, it creates a new file.
If file exists it truncates the file.
'x' Creates a new file. If file already exists, the operation fails.
'a' Open file in append mode.
If file does not exist, it creates a new file.
't' This is the default mode. It opens in text mode.
'b' This opens in binary mode.
'+' This will open a file for reading and writing (updating)
If multiple processes are writing to the file, you must use append mode or the data will be scrambled. Append mode will make the operating system put every write, at the end of the file irrespective of where the writer thinks his position in the file is. This is a common issue for multi-process services like nginx or apache where multiple instances of the same process, are writing to the same log
file. Consider what happens if you try to seek, then write:
Example does not work well with multiple processes:
f = open("logfile", "w"); f.seek(0, os.SEEK_END); f.write("data to write");
writer1: seek to end of file. position 1000 (for example)
writer2: seek to end of file. position 1000
writer2: write data at position 1000 end of file is now 1000 + length of data.
writer1: write data at position 1000 writer1's data overwrites writer2's data.
By using append mode, the operating system will place any write at the end of the file.
f = open("logfile", "a"); f.seek(0, os.SEEK_END); f.write("data to write");
Append most does not mean, "open file, go to end of the file once after opening it". It means, "open file, every write I do will be at the end of the file".
WARNING: For this to work you must write all your record in one shot, in one write call. If you split the data between multiple writes, other writers can and will get their writes in between yours and mangle your data.
Sometimes, beginners have this problem because they attempt to open and write to a file in a loop:
for item in my_data:
with open('results.txt', 'w') as f:
f.write(some_calculation(item))
The problem is that every time the file is opened for writing, it will be truncated (cleared out).
We can solve this by opening in append mode instead; but in cases like this, it will normally be better to solve the problem by inverting the logic. If the file is opened only once, then it won't get overwritten each time; and we can keep writing to it as long as it is open - we don't have to re-open it for each write (it would be pointless for Python to make things work that way, since it would add to the required code for no benefit).
Thus:
with open('results.txt', 'w') as f:
for item in my_data:
f.write(some_calculation(item))
The simplest way to append more text to the end of a file would be to use:
with open('/path/to/file', 'a+') as file:
file.write("Additions to file")
file.close()
The a+ in the open(...) statement instructs to open the file in append mode and allows read and write access.
It is also always good practice to use file.close() to close any files that you have opened once you are done using them.

replacing characters in existing large file

i have a large file in my local disk which contains some fixed length string in first line. I need to programmatically replace that fixed length string using python without reading whole file in memory .
i have tried opening the file in append mode and seeking to 0 position. And then replace the string which is of 9 bytes. The code is also added here , what i tried .
with open ("largefile.txt", 'a') as f:
f.seek(0,0)
f.write("123456789")
I think you just want to open the file for writing without truncating it, which would be r+. to make this reproducible, we first create a file that matches this format:
with open('many_lines.txt', 'w') as fd:
print('abcdefghi', file=fd)
for i in range(10000):
print(f'line {i:09}', file=fd)
then we basically do what you were doing, but with the correct mode:
with open('many_lines.txt', 'r+') as fd:
print('123456789', file=fd)
or you can use write directly, with:
with open('many_lines.txt', 'r+') as fd:
fd.write('123456789')
Note: I'm opening in r+ so that you'll get an FileNotFoundError if it doesn't exist (or the filename is misspelled) rather than just blindly creating a tiny file
The open modes are directly copied from the C/POSIX API for the fopen so your use of a will trigger behaviour that says:
Subsequent writes to the file will always end up at the then current end of file, irrespective of any intervening fseek(3) or similar

How do I add text to an existing text file in python? [duplicate]

How do I append to a file instead of overwriting it?
Set the mode in open() to "a" (append) instead of "w" (write):
with open("test.txt", "a") as myfile:
myfile.write("appended text")
The documentation lists all the available modes.
You need to open the file in append mode, by setting "a" or "ab" as the mode. See open().
When you open with "a" mode, the write position will always be at the end of the file (an append). You can open with "a+" to allow reading, seek backwards and read (but all writes will still be at the end of the file!).
Example:
>>> with open('test1','wb') as f:
f.write('test')
>>> with open('test1','ab') as f:
f.write('koko')
>>> with open('test1','rb') as f:
f.read()
'testkoko'
Note: Using 'a' is not the same as opening with 'w' and seeking to the end of the file - consider what might happen if another program opened the file and started writing between the seek and the write. On some operating systems, opening the file with 'a' guarantees that all your following writes will be appended atomically to the end of the file (even as the file grows by other writes).
A few more details about how the "a" mode operates (tested on Linux only). Even if you seek back, every write will append to the end of the file:
>>> f = open('test','a+') # Not using 'with' just to simplify the example REPL session
>>> f.write('hi')
>>> f.seek(0)
>>> f.read()
'hi'
>>> f.seek(0)
>>> f.write('bye') # Will still append despite the seek(0)!
>>> f.seek(0)
>>> f.read()
'hibye'
In fact, the fopen manpage states:
Opening a file in append mode (a as the first character of mode)
causes all subsequent write operations to this stream to occur at
end-of-file, as if preceded the call:
fseek(stream, 0, SEEK_END);
Old simplified answer (not using with):
Example: (in a real program use with to close the file - see the documentation)
>>> open("test","wb").write("test")
>>> open("test","a+b").write("koko")
>>> open("test","rb").read()
'testkoko'
I always do this,
f = open('filename.txt', 'a')
f.write("stuff")
f.close()
It's simple, but very useful.
Python has many variations off of the main three modes, these three modes are:
'w' write text
'r' read text
'a' append text
So to append to a file it's as easy as:
f = open('filename.txt', 'a')
f.write('whatever you want to write here (in append mode) here.')
Then there are the modes that just make your code fewer lines:
'r+' read + write text
'w+' read + write text
'a+' append + read text
Finally, there are the modes of reading/writing in binary format:
'rb' read binary
'wb' write binary
'ab' append binary
'rb+' read + write binary
'wb+' read + write binary
'ab+' append + read binary
You probably want to pass "a" as the mode argument. See the docs for open().
with open("foo", "a") as f:
f.write("cool beans...")
There are other permutations of the mode argument for updating (+), truncating (w) and binary (b) mode but starting with just "a" is your best bet.
You can also do it with print instead of write:
with open('test.txt', 'a') as f:
print('appended text', file=f)
If test.txt doesn't exist, it will be created...
when we using this line open(filename, "a"), that a indicates the appending the file, that means allow to insert extra data to the existing file.
You can just use this following lines to append the text in your file
def FileSave(filename,content):
with open(filename, "a") as myfile:
myfile.write(content)
FileSave("test.txt","test1 \n")
FileSave("test.txt","test2 \n")
The 'a' parameter signifies append mode. If you don't want to use with open each time, you can easily write a function to do it for you:
def append(txt='\nFunction Successfully Executed', file):
with open(file, 'a') as f:
f.write(txt)
If you want to write somewhere else other than the end, you can use 'r+'†:
import os
with open(file, 'r+') as f:
f.seek(0, os.SEEK_END)
f.write("text to add")
Finally, the 'w+' parameter grants even more freedom. Specifically, it allows you to create the file if it doesn't exist, as well as empty the contents of a file that currently exists.
† Credit for this function goes to #Primusa
You can also open the file in r+ mode and then set the file position to the end of the file.
import os
with open('text.txt', 'r+') as f:
f.seek(0, os.SEEK_END)
f.write("text to add")
Opening the file in r+ mode will let you write to other file positions besides the end, while a and a+ force writing to the end.
if you want to append to a file
with open("test.txt", "a") as myfile:
myfile.write("append me")
We declared the variable myfile to open a file named test.txt. Open takes 2 arguments, the file that we want to open and a string that represents the kinds of permission or operation we want to do on the file
here is file mode options
Mode Description
'r' This is the default mode. It Opens file for reading.
'w' This Mode Opens file for writing.
If file does not exist, it creates a new file.
If file exists it truncates the file.
'x' Creates a new file. If file already exists, the operation fails.
'a' Open file in append mode.
If file does not exist, it creates a new file.
't' This is the default mode. It opens in text mode.
'b' This opens in binary mode.
'+' This will open a file for reading and writing (updating)
If multiple processes are writing to the file, you must use append mode or the data will be scrambled. Append mode will make the operating system put every write, at the end of the file irrespective of where the writer thinks his position in the file is. This is a common issue for multi-process services like nginx or apache where multiple instances of the same process, are writing to the same log
file. Consider what happens if you try to seek, then write:
Example does not work well with multiple processes:
f = open("logfile", "w"); f.seek(0, os.SEEK_END); f.write("data to write");
writer1: seek to end of file. position 1000 (for example)
writer2: seek to end of file. position 1000
writer2: write data at position 1000 end of file is now 1000 + length of data.
writer1: write data at position 1000 writer1's data overwrites writer2's data.
By using append mode, the operating system will place any write at the end of the file.
f = open("logfile", "a"); f.seek(0, os.SEEK_END); f.write("data to write");
Append most does not mean, "open file, go to end of the file once after opening it". It means, "open file, every write I do will be at the end of the file".
WARNING: For this to work you must write all your record in one shot, in one write call. If you split the data between multiple writes, other writers can and will get their writes in between yours and mangle your data.
Sometimes, beginners have this problem because they attempt to open and write to a file in a loop:
for item in my_data:
with open('results.txt', 'w') as f:
f.write(some_calculation(item))
The problem is that every time the file is opened for writing, it will be truncated (cleared out).
We can solve this by opening in append mode instead; but in cases like this, it will normally be better to solve the problem by inverting the logic. If the file is opened only once, then it won't get overwritten each time; and we can keep writing to it as long as it is open - we don't have to re-open it for each write (it would be pointless for Python to make things work that way, since it would add to the required code for no benefit).
Thus:
with open('results.txt', 'w') as f:
for item in my_data:
f.write(some_calculation(item))
The simplest way to append more text to the end of a file would be to use:
with open('/path/to/file', 'a+') as file:
file.write("Additions to file")
file.close()
The a+ in the open(...) statement instructs to open the file in append mode and allows read and write access.
It is also always good practice to use file.close() to close any files that you have opened once you are done using them.

Ideal way to read, process then write a file in python

There are a lot of files, for each of them I need to read the text content, do some processing of the text, then write the text back (replacing the old content).
I know I can first open the files as rt to read and process the content, and then close and reopen them as wt, but obviously this is not a good way. Can I just open a file once to read and write? How?
See: http://docs.python.org/2/library/functions.html#open
The most commonly-used values of mode are 'r' for reading, 'w' for writing (truncating the file if it already exists), and 'a' for appending (which on some Unix systems means that all writes append to the end of the file regardless of the current seek position). If mode is omitted, it defaults to 'r'. The default is to use text mode, which may convert '\n' characters to a platform-specific representation on writing and back on reading. Thus, when opening a binary file, you should append 'b' to the mode value to open the file in binary mode, which will improve portability. (Appending 'b' is useful even on systems that don’t treat binary and text files differently, where it serves as documentation.) See below for more possible values of mode.
Modes 'r+', 'w+' and 'a+' open the file for updating (note that 'w+' truncates the file). Append 'b' to the mode to open the file in binary mode, on systems that differentiate between binary and text files; on systems that don’t have this distinction, adding the 'b' has no effect.
So, you can open a file in mode r+, read from it, truncate, then write to the same file object. But you shouldn't do that.
You should open the file in read mode, write to a temporary file, then os.rename the temporary file to overwrite the original file. This way, your actions are atomic; if something goes wrong during the write step (for example, it gets interrupted), you don't end up having lost the original file, and having only partially written out your replacement text.
Check out the fileinput module. It lets you do what others are advising: back up the input file, manipulate its contents, and then write the altered data to the same place.
Optional in-place filtering: if the keyword argument inplace=True is passed to fileinput.input() or to the FileInput constructor, the file is moved to a backup file and standard output is directed to the input file (if a file of the same name as the backup file already exists, it will be replaced silently). This makes it possible to write a filter that rewrites its input file in place.
Here's an example. Say I have a text file like:
1
2
3
4
I can do (Python 3):
import fileinput
file_path = r"C:\temp\fileinput_test.txt"
with fileinput.FileInput(files=[file_path], inplace=True) as input_data:
for line in input_data:
# Double the number on each line
s = str(int(line.strip()) * 2)
print(s)
And my file becomes:
2
4
6
8
You can use the 'r+' file mode to open a file for reading and writing at the same time.
example:
with open("file.txt", 'r+') as filehandle:
# can read and write to file here
well, you can choose the "r+w" mode, with which you need only open the file once

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