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So I have a template and an image. I want to find the location and orientation of the template inside the image. I am using SIFT to find features and description.
Problem is only one feature is consistently correct at recognizing the image. Homography requires at least 4 features to work. error: (-28:Unknown error code -28) The input arrays should have at least 4 corresponding point sets to calculate Homography in function 'cv::findHomography'
Since I am working with 2D image (with same scale), position and rotation of even one correct feature should be enough to provide the location and rotation of the template in the image.
From OpenCV Docs https://docs.opencv.org/3.4/da/df5/tutorial_py_sift_intro.html
OpenCV also provides cv.drawKeyPoints() function which draws the small
circles on the locations of keypoints. If you pass a flag,
cv.DRAW_MATCHES_FLAGS_DRAW_RICH_KEYPOINTS to it, it will draw a circle
with size of keypoint and it will even show its orientation.
However the image I am working is too low resolution to actually see the circles and I need numbers which can compared.
All the other examples of finding orientation I find on the internet use edge detection. However There is no straight edge whose slope can be easily calculated exist in my template.
This solution can help, however my images could potentially have other unwanted objects which will mess with "minAreaRect". If there is any other solution, please let me know.
I have looked for tutorial, books, documentation on how to crunch the numbers in 'keypoints' and 'description', but I could not find any.
Perhaps I should use SURF -which is faster with 2d, same color images- but it is not available in latest opencv version.
Template to be searched
Image to be searched in
Matched
sift = cv.SIFT_create()
# find the keypoints and descriptors with SIFT
kp1, des1 = sift.detectAndCompute(img1, None)
kp2, des2 = sift.detectAndCompute(img2, None)
print (des1)
# BFMatcher with default params
bf = cv.BFMatcher()
matches = bf.knnMatch(des1,des2,k=2)
# Apply ratio test
good = []
good_match = []
for m,n in matches:
if m.distance < .5*n.distance:
good.append([m])
good_match.append(m)
print('good matches are')
print(good)
print(good_match)
# cv.drawMatchesKnn expects list of lists as matches.
img3 = cv.drawMatchesKnn(img1,kp1,img2,kp2,good,None,flags=cv.DRAW_MATCHES_FLAGS_DRAW_RICH_KEYPOINTS)
plt.imshow(img3),plt.show()
src_pts = np.float32([ kp1[m.queryIdx].pt for m in good_match ]).reshape(-1,1,2)
dst_pts = np.float32([ kp2[m.trainIdx].pt for m in good_match ]).reshape(-1,1,2)
M, mask = cv.findHomography(src_pts, dst_pts, cv.RANSAC,5.0)
matchesMask = mask.ravel().tolist()
h,w = img1.shape
pts = np.float32([ [0,0],[0,h-1],[w-1,h-1],[w-1,0] ]).reshape(-1,1,2)
dst = cv.perspectiveTransform(pts,M)
img2 = cv.polylines(img2,[np.int32(dst)],True,255,3, cv.LINE_AA)
draw_params = dict(matchColor = (0,255,0), # draw matches in green color
singlePointColor = None,
matchesMask = matchesMask, # draw only inliers
flags = 2)
img3 = cv.drawMatches(img1,kp1,img2,kp2,good,None,**draw_params)
plt.imshow(img3, 'gray'),plt.show()
So I'm trying to overlay a thermal image with an rgb image using SIFT to match features and homography so that I can overlay them later on. The code I have works with about 50% of the thermal/rgb sets I have but many sets, such as this one, give horrible results. I think the homography is fine but doesn't work because the matches are way off. I'll attach some code, any advice on how to tune this would be great as I've spent a long time already trying to get this working on my own. Thanks!
MIN_MATCH_COUNT = 10
sift = cv2.xfeatures2d.SIFT_create(sigma=1.6, contrastThreshold=0.04,edgeThreshold = 15)
kp1, des1 = sift.detectAndCompute(rgb, None)
kp2, des2 = sift.detectAndCompute(thermal, None)
bf = cv2.BFMatcher()
matches = bf.knnMatch(des1, des2, k=2)
good = []
for m, n in matches:
if m.distance < 0.8 * n.distance:
good.append(m)
good = sorted(good, key=lambda x: x.distance)
img3 = cv2.drawMatches(rgb, kp1, thermal, kp2, good, None, flags=2)
which gives the following
Then I do homography with RANSAC on the found matches
if len(good) > MIN_MATCH_COUNT:
src_pts = np.float32([kp1[m.queryIdx].pt for m in good]).reshape(-1, 1, 2)
dst_pts = np.float32([kp2[m.trainIdx].pt for m in good]).reshape(-1, 1, 2)
M, mask = cv2.findHomography(src_pts, dst_pts, cv2.RANSAC, 5.0, maxIters=1000)
matchesMask = mask.ravel().tolist()
h, w, c = rgb.shape
pts = np.float32([[0, 0], [0, h - 1], [w - 1, h - 1], [w - 1, 0]]).reshape(-1, 1, 2)
dst = cv2.perspectiveTransform(pts, M)
thermal = cv2.polylines(thermal, [np.int32(dst)], True, 255, 3, cv2.LINE_AA) # draw lines around as a box
draw_params = dict(matchColor=(0, 255, 0), # draw matches in green color
singlePointColor=None,
matchesMask=matchesMask, # draw only inliers
flags=2)
img3 = cv2.drawMatches(rgb, kp1, thermal, kp2, good, None, **draw_params)
resulting in this
Like I said, I think that this is failing because the BFMatcher is not finding correct matches but I am not sure why. Again any and all help is very appreciated! I've tried using an orb detector, converting the rgb image to grayscale, and pre-sclaing images to similar sizes and still get bad results.
Here is an example of a working rgb-thermal pair to demonstrate what I am trying to do.
The problem with your image is that it's so simple compared to natural images (no color, no major differences in texture, etc.), you cannot reliably use SIFT and other techniques made with normal photos in mind. Most of your wrong matches are actually good matches, since the matches look locally similar to each other (after obtaining the descriptor).
My suggestion is to look at alternatives that match images using structural information, or add information to the image (e.g. using a height rainbow colormap since your images can be seen as bumpmaps; using the distance transform + colormap might work too, or using both mentioned + edge detection as the 3 channels for a very weird but heterogeneous color image) and see if SIFT behaves differently.
I was doing a fun project: Solving a Sudoku from an input image using OpenCV (as in Google goggles etc). And I have completed the task, but at the end I found a little problem for which I came here.
I did the programming using Python API of OpenCV 2.3.1.
Below is what I did :
Read the image
Find the contours
Select the one with maximum area, ( and also somewhat equivalent to square).
Find the corner points.
e.g. given below:
(Notice here that the green line correctly coincides with the true boundary of the Sudoku, so the Sudoku can be correctly warped. Check next image)
warp the image to a perfect square
eg image:
Perform OCR ( for which I used the method I have given in Simple Digit Recognition OCR in OpenCV-Python )
And the method worked well.
Problem:
Check out this image.
Performing the step 4 on this image gives the result below:
The red line drawn is the original contour which is the true outline of sudoku boundary.
The green line drawn is approximated contour which will be the outline of warped image.
Which of course, there is difference between green line and red line at the top edge of sudoku. So while warping, I am not getting the original boundary of the Sudoku.
My Question :
How can I warp the image on the correct boundary of the Sudoku, i.e. the red line OR how can I remove the difference between red line and green line? Is there any method for this in OpenCV?
I have a solution that works, but you'll have to translate it to OpenCV yourself. It's written in Mathematica.
The first step is to adjust the brightness in the image, by dividing each pixel with the result of a closing operation:
src = ColorConvert[Import["http://davemark.com/images/sudoku.jpg"], "Grayscale"];
white = Closing[src, DiskMatrix[5]];
srcAdjusted = Image[ImageData[src]/ImageData[white]]
The next step is to find the sudoku area, so I can ignore (mask out) the background. For that, I use connected component analysis, and select the component that's got the largest convex area:
components =
ComponentMeasurements[
ColorNegate#Binarize[srcAdjusted], {"ConvexArea", "Mask"}][[All,
2]];
largestComponent = Image[SortBy[components, First][[-1, 2]]]
By filling this image, I get a mask for the sudoku grid:
mask = FillingTransform[largestComponent]
Now, I can use a 2nd order derivative filter to find the vertical and horizontal lines in two separate images:
lY = ImageMultiply[MorphologicalBinarize[GaussianFilter[srcAdjusted, 3, {2, 0}], {0.02, 0.05}], mask];
lX = ImageMultiply[MorphologicalBinarize[GaussianFilter[srcAdjusted, 3, {0, 2}], {0.02, 0.05}], mask];
I use connected component analysis again to extract the grid lines from these images. The grid lines are much longer than the digits, so I can use caliper length to select only the grid lines-connected components. Sorting them by position, I get 2x10 mask images for each of the vertical/horizontal grid lines in the image:
verticalGridLineMasks =
SortBy[ComponentMeasurements[
lX, {"CaliperLength", "Centroid", "Mask"}, # > 100 &][[All,
2]], #[[2, 1]] &][[All, 3]];
horizontalGridLineMasks =
SortBy[ComponentMeasurements[
lY, {"CaliperLength", "Centroid", "Mask"}, # > 100 &][[All,
2]], #[[2, 2]] &][[All, 3]];
Next I take each pair of vertical/horizontal grid lines, dilate them, calculate the pixel-by-pixel intersection, and calculate the center of the result. These points are the grid line intersections:
centerOfGravity[l_] :=
ComponentMeasurements[Image[l], "Centroid"][[1, 2]]
gridCenters =
Table[centerOfGravity[
ImageData[Dilation[Image[h], DiskMatrix[2]]]*
ImageData[Dilation[Image[v], DiskMatrix[2]]]], {h,
horizontalGridLineMasks}, {v, verticalGridLineMasks}];
The last step is to define two interpolation functions for X/Y mapping through these points, and transform the image using these functions:
fnX = ListInterpolation[gridCenters[[All, All, 1]]];
fnY = ListInterpolation[gridCenters[[All, All, 2]]];
transformed =
ImageTransformation[
srcAdjusted, {fnX ## Reverse[#], fnY ## Reverse[#]} &, {9*50, 9*50},
PlotRange -> {{1, 10}, {1, 10}}, DataRange -> Full]
All of the operations are basic image processing function, so this should be possible in OpenCV, too. The spline-based image transformation might be harder, but I don't think you really need it. Probably using the perspective transformation you use now on each individual cell will give good enough results.
Nikie's answer solved my problem, but his answer was in Mathematica. So I thought I should give its OpenCV adaptation here. But after implementing I could see that OpenCV code is much bigger than nikie's mathematica code. And also, I couldn't find interpolation method done by nikie in OpenCV ( although it can be done using scipy, i will tell it when time comes.)
1. Image PreProcessing ( closing operation )
import cv2
import numpy as np
img = cv2.imread('dave.jpg')
img = cv2.GaussianBlur(img,(5,5),0)
gray = cv2.cvtColor(img,cv2.COLOR_BGR2GRAY)
mask = np.zeros((gray.shape),np.uint8)
kernel1 = cv2.getStructuringElement(cv2.MORPH_ELLIPSE,(11,11))
close = cv2.morphologyEx(gray,cv2.MORPH_CLOSE,kernel1)
div = np.float32(gray)/(close)
res = np.uint8(cv2.normalize(div,div,0,255,cv2.NORM_MINMAX))
res2 = cv2.cvtColor(res,cv2.COLOR_GRAY2BGR)
Result :
2. Finding Sudoku Square and Creating Mask Image
thresh = cv2.adaptiveThreshold(res,255,0,1,19,2)
contour,hier = cv2.findContours(thresh,cv2.RETR_TREE,cv2.CHAIN_APPROX_SIMPLE)
max_area = 0
best_cnt = None
for cnt in contour:
area = cv2.contourArea(cnt)
if area > 1000:
if area > max_area:
max_area = area
best_cnt = cnt
cv2.drawContours(mask,[best_cnt],0,255,-1)
cv2.drawContours(mask,[best_cnt],0,0,2)
res = cv2.bitwise_and(res,mask)
Result :
3. Finding Vertical lines
kernelx = cv2.getStructuringElement(cv2.MORPH_RECT,(2,10))
dx = cv2.Sobel(res,cv2.CV_16S,1,0)
dx = cv2.convertScaleAbs(dx)
cv2.normalize(dx,dx,0,255,cv2.NORM_MINMAX)
ret,close = cv2.threshold(dx,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,kernelx,iterations = 1)
contour, hier = cv2.findContours(close,cv2.RETR_EXTERNAL,cv2.CHAIN_APPROX_SIMPLE)
for cnt in contour:
x,y,w,h = cv2.boundingRect(cnt)
if h/w > 5:
cv2.drawContours(close,[cnt],0,255,-1)
else:
cv2.drawContours(close,[cnt],0,0,-1)
close = cv2.morphologyEx(close,cv2.MORPH_CLOSE,None,iterations = 2)
closex = close.copy()
Result :
4. Finding Horizontal Lines
kernely = cv2.getStructuringElement(cv2.MORPH_RECT,(10,2))
dy = cv2.Sobel(res,cv2.CV_16S,0,2)
dy = cv2.convertScaleAbs(dy)
cv2.normalize(dy,dy,0,255,cv2.NORM_MINMAX)
ret,close = cv2.threshold(dy,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,kernely)
contour, hier = cv2.findContours(close,cv2.RETR_EXTERNAL,cv2.CHAIN_APPROX_SIMPLE)
for cnt in contour:
x,y,w,h = cv2.boundingRect(cnt)
if w/h > 5:
cv2.drawContours(close,[cnt],0,255,-1)
else:
cv2.drawContours(close,[cnt],0,0,-1)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,None,iterations = 2)
closey = close.copy()
Result :
Of course, this one is not so good.
5. Finding Grid Points
res = cv2.bitwise_and(closex,closey)
Result :
6. Correcting the defects
Here, nikie does some kind of interpolation, about which I don't have much knowledge. And i couldn't find any corresponding function for this OpenCV. (may be it is there, i don't know).
Check out this SOF which explains how to do this using SciPy, which I don't want to use : Image transformation in OpenCV
So, here I took 4 corners of each sub-square and applied warp Perspective to each.
For that, first we find the centroids.
contour, hier = cv2.findContours(res,cv2.RETR_LIST,cv2.CHAIN_APPROX_SIMPLE)
centroids = []
for cnt in contour:
mom = cv2.moments(cnt)
(x,y) = int(mom['m10']/mom['m00']), int(mom['m01']/mom['m00'])
cv2.circle(img,(x,y),4,(0,255,0),-1)
centroids.append((x,y))
But resulting centroids won't be sorted. Check out below image to see their order:
So we sort them from left to right, top to bottom.
centroids = np.array(centroids,dtype = np.float32)
c = centroids.reshape((100,2))
c2 = c[np.argsort(c[:,1])]
b = np.vstack([c2[i*10:(i+1)*10][np.argsort(c2[i*10:(i+1)*10,0])] for i in xrange(10)])
bm = b.reshape((10,10,2))
Now see below their order :
Finally we apply the transformation and create a new image of size 450x450.
output = np.zeros((450,450,3),np.uint8)
for i,j in enumerate(b):
ri = i/10
ci = i%10
if ci != 9 and ri!=9:
src = bm[ri:ri+2, ci:ci+2 , :].reshape((4,2))
dst = np.array( [ [ci*50,ri*50],[(ci+1)*50-1,ri*50],[ci*50,(ri+1)*50-1],[(ci+1)*50-1,(ri+1)*50-1] ], np.float32)
retval = cv2.getPerspectiveTransform(src,dst)
warp = cv2.warpPerspective(res2,retval,(450,450))
output[ri*50:(ri+1)*50-1 , ci*50:(ci+1)*50-1] = warp[ri*50:(ri+1)*50-1 , ci*50:(ci+1)*50-1].copy()
Result :
The result is almost same as nikie's, but code length is large. May be, better methods are available out there, but until then, this works OK.
Regards
ARK.
You could try to use some kind of grid based modeling of you arbitrary warping. And since the sudoku already is a grid, that shouldn't be too hard.
So you could try to detect the boundaries of each 3x3 subregion and then warp each region individually. If the detection succeeds it would give you a better approximation.
I thought this was a great post, and a great solution by ARK; very well laid out and explained.
I was working on a similar problem, and built the entire thing. There were some changes (i.e. xrange to range, arguments in cv2.findContours), but this should work out of the box (Python 3.5, Anaconda).
This is a compilation of the elements above, with some of the missing code added (i.e., labeling of points).
'''
https://stackoverflow.com/questions/10196198/how-to-remove-convexity-defects-in-a-sudoku-square
'''
import cv2
import numpy as np
img = cv2.imread('test.png')
winname="raw image"
cv2.namedWindow(winname)
cv2.imshow(winname, img)
cv2.moveWindow(winname, 100,100)
img = cv2.GaussianBlur(img,(5,5),0)
winname="blurred"
cv2.namedWindow(winname)
cv2.imshow(winname, img)
cv2.moveWindow(winname, 100,150)
gray = cv2.cvtColor(img,cv2.COLOR_BGR2GRAY)
mask = np.zeros((gray.shape),np.uint8)
kernel1 = cv2.getStructuringElement(cv2.MORPH_ELLIPSE,(11,11))
winname="gray"
cv2.namedWindow(winname)
cv2.imshow(winname, gray)
cv2.moveWindow(winname, 100,200)
close = cv2.morphologyEx(gray,cv2.MORPH_CLOSE,kernel1)
div = np.float32(gray)/(close)
res = np.uint8(cv2.normalize(div,div,0,255,cv2.NORM_MINMAX))
res2 = cv2.cvtColor(res,cv2.COLOR_GRAY2BGR)
winname="res2"
cv2.namedWindow(winname)
cv2.imshow(winname, res2)
cv2.moveWindow(winname, 100,250)
#find elements
thresh = cv2.adaptiveThreshold(res,255,0,1,19,2)
img_c, contour,hier = cv2.findContours(thresh,cv2.RETR_TREE,cv2.CHAIN_APPROX_SIMPLE)
max_area = 0
best_cnt = None
for cnt in contour:
area = cv2.contourArea(cnt)
if area > 1000:
if area > max_area:
max_area = area
best_cnt = cnt
cv2.drawContours(mask,[best_cnt],0,255,-1)
cv2.drawContours(mask,[best_cnt],0,0,2)
res = cv2.bitwise_and(res,mask)
winname="puzzle only"
cv2.namedWindow(winname)
cv2.imshow(winname, res)
cv2.moveWindow(winname, 100,300)
# vertical lines
kernelx = cv2.getStructuringElement(cv2.MORPH_RECT,(2,10))
dx = cv2.Sobel(res,cv2.CV_16S,1,0)
dx = cv2.convertScaleAbs(dx)
cv2.normalize(dx,dx,0,255,cv2.NORM_MINMAX)
ret,close = cv2.threshold(dx,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,kernelx,iterations = 1)
img_d, contour, hier = cv2.findContours(close,cv2.RETR_EXTERNAL,cv2.CHAIN_APPROX_SIMPLE)
for cnt in contour:
x,y,w,h = cv2.boundingRect(cnt)
if h/w > 5:
cv2.drawContours(close,[cnt],0,255,-1)
else:
cv2.drawContours(close,[cnt],0,0,-1)
close = cv2.morphologyEx(close,cv2.MORPH_CLOSE,None,iterations = 2)
closex = close.copy()
winname="vertical lines"
cv2.namedWindow(winname)
cv2.imshow(winname, img_d)
cv2.moveWindow(winname, 100,350)
# find horizontal lines
kernely = cv2.getStructuringElement(cv2.MORPH_RECT,(10,2))
dy = cv2.Sobel(res,cv2.CV_16S,0,2)
dy = cv2.convertScaleAbs(dy)
cv2.normalize(dy,dy,0,255,cv2.NORM_MINMAX)
ret,close = cv2.threshold(dy,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,kernely)
img_e, contour, hier = cv2.findContours(close,cv2.RETR_EXTERNAL,cv2.CHAIN_APPROX_SIMPLE)
for cnt in contour:
x,y,w,h = cv2.boundingRect(cnt)
if w/h > 5:
cv2.drawContours(close,[cnt],0,255,-1)
else:
cv2.drawContours(close,[cnt],0,0,-1)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,None,iterations = 2)
closey = close.copy()
winname="horizontal lines"
cv2.namedWindow(winname)
cv2.imshow(winname, img_e)
cv2.moveWindow(winname, 100,400)
# intersection of these two gives dots
res = cv2.bitwise_and(closex,closey)
winname="intersections"
cv2.namedWindow(winname)
cv2.imshow(winname, res)
cv2.moveWindow(winname, 100,450)
# text blue
textcolor=(0,255,0)
# points green
pointcolor=(255,0,0)
# find centroids and sort
img_f, contour, hier = cv2.findContours(res,cv2.RETR_LIST,cv2.CHAIN_APPROX_SIMPLE)
centroids = []
for cnt in contour:
mom = cv2.moments(cnt)
(x,y) = int(mom['m10']/mom['m00']), int(mom['m01']/mom['m00'])
cv2.circle(img,(x,y),4,(0,255,0),-1)
centroids.append((x,y))
# sorting
centroids = np.array(centroids,dtype = np.float32)
c = centroids.reshape((100,2))
c2 = c[np.argsort(c[:,1])]
b = np.vstack([c2[i*10:(i+1)*10][np.argsort(c2[i*10:(i+1)*10,0])] for i in range(10)])
bm = b.reshape((10,10,2))
# make copy
labeled_in_order=res2.copy()
for index, pt in enumerate(b):
cv2.putText(labeled_in_order,str(index),tuple(pt),cv2.FONT_HERSHEY_DUPLEX, 0.75, textcolor)
cv2.circle(labeled_in_order, tuple(pt), 5, pointcolor)
winname="labeled in order"
cv2.namedWindow(winname)
cv2.imshow(winname, labeled_in_order)
cv2.moveWindow(winname, 100,500)
# create final
output = np.zeros((450,450,3),np.uint8)
for i,j in enumerate(b):
ri = int(i/10) # row index
ci = i%10 # column index
if ci != 9 and ri!=9:
src = bm[ri:ri+2, ci:ci+2 , :].reshape((4,2))
dst = np.array( [ [ci*50,ri*50],[(ci+1)*50-1,ri*50],[ci*50,(ri+1)*50-1],[(ci+1)*50-1,(ri+1)*50-1] ], np.float32)
retval = cv2.getPerspectiveTransform(src,dst)
warp = cv2.warpPerspective(res2,retval,(450,450))
output[ri*50:(ri+1)*50-1 , ci*50:(ci+1)*50-1] = warp[ri*50:(ri+1)*50-1 , ci*50:(ci+1)*50-1].copy()
winname="final"
cv2.namedWindow(winname)
cv2.imshow(winname, output)
cv2.moveWindow(winname, 600,100)
cv2.waitKey(0)
cv2.destroyAllWindows()
I want to add that above method works only when sudoku board stands straight, otherwise height/width (or vice versa) ratio test will most probably fail and you will not be able to detect edges of sudoku. (I also want to add that if lines that are not perpendicular to the image borders, sobel operations (dx and dy) will still work as lines will still have edges with respect to both axes.)
To be able to detect straight lines you should work on contour or pixel-wise analysis such as contourArea/boundingRectArea, top left and bottom right points...
Edit: I managed to check whether a set of contours form a line or not by applying linear regression and checking the error. However linear regression performed poorly when slope of the line is too big (i.e. >1000) or it is very close to 0. Therefore applying the ratio test above (in most upvoted answer) before linear regression is logical and did work for me.
To remove undected corners I applied gamma correction with a gamma value of 0.8.
The red circle is drawn to show the missing corner.
The code is:
gamma = 0.8
invGamma = 1/gamma
table = np.array([((i / 255.0) ** invGamma) * 255
for i in np.arange(0, 256)]).astype("uint8")
cv2.LUT(img, table, img)
This is in addition to Abid Rahman's answer if some corner points are missing.
I am analyzing multiple images and need to be able to tell if they are shifted compared to a reference image. The purpose is to tell if the camera moved at all in between capturing images. I would ideally like to be able to correct the shift in order to still do the analysis, but at a minimum I need to be able to determine if an image is shifted and discard it if it's beyond a certain threshold.
Here are some examples of the shifts in an image I would like to detect:
I will use the first image as a reference and then compare all of the following images to it to figure out if they are shifted. The images are gray-scale (they are just displayed in color using a heat-map) and are stored in a 2-D numpy array. Any ideas how I can do this? I would prefer to use the packages I already have installed (scipy, numpy, PIL, matplotlib).
As Lukas Graf hints, you are looking for cross-correlation. It works well, if:
The scale of your images does not change considerably.
There is no rotation change in the images.
There is no significant illumination change in the images.
For plain translations cross-correlation is very good.
The simplest cross-correlation tool is scipy.signal.correlate. However, it uses the trivial method for cross-correlation, which is O(n^4) for a two-dimensional image with side length n. In practice, with your images it'll take very long.
The better too is scipy.signal.fftconvolve as convolution and correlation are closely related.
Something like this:
import numpy as np
import scipy.signal
def cross_image(im1, im2):
# get rid of the color channels by performing a grayscale transform
# the type cast into 'float' is to avoid overflows
im1_gray = np.sum(im1.astype('float'), axis=2)
im2_gray = np.sum(im2.astype('float'), axis=2)
# get rid of the averages, otherwise the results are not good
im1_gray -= np.mean(im1_gray)
im2_gray -= np.mean(im2_gray)
# calculate the correlation image; note the flipping of onw of the images
return scipy.signal.fftconvolve(im1_gray, im2_gray[::-1,::-1], mode='same')
The funny-looking indexing of im2_gray[::-1,::-1] rotates it by 180° (mirrors both horizontally and vertically). This is the difference between convolution and correlation, correlation is a convolution with the second signal mirrored.
Now if we just correlate the first (topmost) image with itself, we get:
This gives a measure of self-similarity of the image. The brightest spot is at (201, 200), which is in the center for the (402, 400) image.
The brightest spot coordinates can be found:
np.unravel_index(np.argmax(corr_img), corr_img.shape)
The linear position of the brightest pixel is returned by argmax, but it has to be converted back into the 2D coordinates with unravel_index.
Next, we try the same by correlating the first image with the second image:
The correlation image looks similar, but the best correlation has moved to (149,200), i.e. 52 pixels upwards in the image. This is the offset between the two images.
This seems to work with these simple images. However, there may be false correlation peaks, as well, and any of the problems outlined in the beginning of this answer may ruin the results.
In any case you should consider using a windowing function. The choice of the function is not that important, as long as something is used. Also, if you have problems with small rotation or scale changes, try correlating several small areas agains the surrounding image. That will give you different displacements at different positions of the image.
Another way to solve it is to compute sift points in both images, use RANSAC to get rid of outliers and then solve for translation using a least squares estimator.
as Bharat said as well another is using sift features and Ransac:
import numpy as np
import cv2
from matplotlib import pyplot as plt
def crop_region(path, c_p):
"""
This function crop the match region in the input image
c_p: corner points
"""
# 3 or 4 channel as the original
img = cv2.imread(path, -1)
# mask
mask = np.zeros(img.shape, dtype=np.uint8)
# fill the the match region
channel_count = img.shape[2]
ignore_mask_color = (255,)*channel_count
cv2.fillPoly(mask, c_p, ignore_mask_color)
# apply the mask
matched_region = cv2.bitwise_and(img, mask)
return matched_region
def features_matching(path_temp,path_train):
"""
Function for Feature Matching + Perspective Transformation
"""
img1 = cv2.imread(path_temp, 0) # template
img2 = cv2.imread(path_train, 0) # input image
min_match=10
# SIFT detector
sift = cv2.xfeatures2d.SIFT_create()
# extract the keypoints and descriptors with SIFT
kps1, des1 = sift.detectAndCompute(img1,None)
kps2, des2 = sift.detectAndCompute(img2,None)
FLANN_INDEX_KDTREE = 0
index_params = dict(algorithm = FLANN_INDEX_KDTREE, trees = 5)
search_params = dict(checks = 50)
flann = cv2.FlannBasedMatcher(index_params, search_params)
matches = flann.knnMatch(des1, des2, k=2)
# store all the good matches (g_matches) as per Lowe's ratio
g_match = []
for m,n in matches:
if m.distance < 0.7 * n.distance:
g_match.append(m)
if len(g_match)>min_match:
src_pts = np.float32([ kps1[m.queryIdx].pt for m in g_match ]).reshape(-1,1,2)
dst_pts = np.float32([ kps2[m.trainIdx].pt for m in g_match ]).reshape(-1,1,2)
M, mask = cv2.findHomography(src_pts, dst_pts, cv2.RANSAC,5.0)
matchesMask = mask.ravel().tolist()
h,w = img1.shape
pts = np.float32([ [0,0],[0,h-1],[w-1,h-1],[w-1,0] ]).reshape(-1,1,2)
dst = cv2.perspectiveTransform(pts,M)
img2 = cv2.polylines(img2, [np.int32(dst)], True, (0,255,255) , 3, cv2.LINE_AA)
else:
print "Not enough matches have been found! - %d/%d" % (len(g_match), min_match)
matchesMask = None
draw_params = dict(matchColor = (0,255,255),
singlePointColor = (0,255,0),
matchesMask = matchesMask, # only inliers
flags = 2)
# region corners
cpoints=np.int32(dst)
a, b,c = cpoints.shape
# reshape to standard format
c_p=cpoints.reshape((b,a,c))
# crop matching region
matching_region = crop_region(path_train, c_p)
img3 = cv2.drawMatches(img1, kps1, img2, kps2, g_match, None, **draw_params)
return (img3,matching_region)
I was doing a fun project: Solving a Sudoku from an input image using OpenCV (as in Google goggles etc). And I have completed the task, but at the end I found a little problem for which I came here.
I did the programming using Python API of OpenCV 2.3.1.
Below is what I did :
Read the image
Find the contours
Select the one with maximum area, ( and also somewhat equivalent to square).
Find the corner points.
e.g. given below:
(Notice here that the green line correctly coincides with the true boundary of the Sudoku, so the Sudoku can be correctly warped. Check next image)
warp the image to a perfect square
eg image:
Perform OCR ( for which I used the method I have given in Simple Digit Recognition OCR in OpenCV-Python )
And the method worked well.
Problem:
Check out this image.
Performing the step 4 on this image gives the result below:
The red line drawn is the original contour which is the true outline of sudoku boundary.
The green line drawn is approximated contour which will be the outline of warped image.
Which of course, there is difference between green line and red line at the top edge of sudoku. So while warping, I am not getting the original boundary of the Sudoku.
My Question :
How can I warp the image on the correct boundary of the Sudoku, i.e. the red line OR how can I remove the difference between red line and green line? Is there any method for this in OpenCV?
I have a solution that works, but you'll have to translate it to OpenCV yourself. It's written in Mathematica.
The first step is to adjust the brightness in the image, by dividing each pixel with the result of a closing operation:
src = ColorConvert[Import["http://davemark.com/images/sudoku.jpg"], "Grayscale"];
white = Closing[src, DiskMatrix[5]];
srcAdjusted = Image[ImageData[src]/ImageData[white]]
The next step is to find the sudoku area, so I can ignore (mask out) the background. For that, I use connected component analysis, and select the component that's got the largest convex area:
components =
ComponentMeasurements[
ColorNegate#Binarize[srcAdjusted], {"ConvexArea", "Mask"}][[All,
2]];
largestComponent = Image[SortBy[components, First][[-1, 2]]]
By filling this image, I get a mask for the sudoku grid:
mask = FillingTransform[largestComponent]
Now, I can use a 2nd order derivative filter to find the vertical and horizontal lines in two separate images:
lY = ImageMultiply[MorphologicalBinarize[GaussianFilter[srcAdjusted, 3, {2, 0}], {0.02, 0.05}], mask];
lX = ImageMultiply[MorphologicalBinarize[GaussianFilter[srcAdjusted, 3, {0, 2}], {0.02, 0.05}], mask];
I use connected component analysis again to extract the grid lines from these images. The grid lines are much longer than the digits, so I can use caliper length to select only the grid lines-connected components. Sorting them by position, I get 2x10 mask images for each of the vertical/horizontal grid lines in the image:
verticalGridLineMasks =
SortBy[ComponentMeasurements[
lX, {"CaliperLength", "Centroid", "Mask"}, # > 100 &][[All,
2]], #[[2, 1]] &][[All, 3]];
horizontalGridLineMasks =
SortBy[ComponentMeasurements[
lY, {"CaliperLength", "Centroid", "Mask"}, # > 100 &][[All,
2]], #[[2, 2]] &][[All, 3]];
Next I take each pair of vertical/horizontal grid lines, dilate them, calculate the pixel-by-pixel intersection, and calculate the center of the result. These points are the grid line intersections:
centerOfGravity[l_] :=
ComponentMeasurements[Image[l], "Centroid"][[1, 2]]
gridCenters =
Table[centerOfGravity[
ImageData[Dilation[Image[h], DiskMatrix[2]]]*
ImageData[Dilation[Image[v], DiskMatrix[2]]]], {h,
horizontalGridLineMasks}, {v, verticalGridLineMasks}];
The last step is to define two interpolation functions for X/Y mapping through these points, and transform the image using these functions:
fnX = ListInterpolation[gridCenters[[All, All, 1]]];
fnY = ListInterpolation[gridCenters[[All, All, 2]]];
transformed =
ImageTransformation[
srcAdjusted, {fnX ## Reverse[#], fnY ## Reverse[#]} &, {9*50, 9*50},
PlotRange -> {{1, 10}, {1, 10}}, DataRange -> Full]
All of the operations are basic image processing function, so this should be possible in OpenCV, too. The spline-based image transformation might be harder, but I don't think you really need it. Probably using the perspective transformation you use now on each individual cell will give good enough results.
Nikie's answer solved my problem, but his answer was in Mathematica. So I thought I should give its OpenCV adaptation here. But after implementing I could see that OpenCV code is much bigger than nikie's mathematica code. And also, I couldn't find interpolation method done by nikie in OpenCV ( although it can be done using scipy, i will tell it when time comes.)
1. Image PreProcessing ( closing operation )
import cv2
import numpy as np
img = cv2.imread('dave.jpg')
img = cv2.GaussianBlur(img,(5,5),0)
gray = cv2.cvtColor(img,cv2.COLOR_BGR2GRAY)
mask = np.zeros((gray.shape),np.uint8)
kernel1 = cv2.getStructuringElement(cv2.MORPH_ELLIPSE,(11,11))
close = cv2.morphologyEx(gray,cv2.MORPH_CLOSE,kernel1)
div = np.float32(gray)/(close)
res = np.uint8(cv2.normalize(div,div,0,255,cv2.NORM_MINMAX))
res2 = cv2.cvtColor(res,cv2.COLOR_GRAY2BGR)
Result :
2. Finding Sudoku Square and Creating Mask Image
thresh = cv2.adaptiveThreshold(res,255,0,1,19,2)
contour,hier = cv2.findContours(thresh,cv2.RETR_TREE,cv2.CHAIN_APPROX_SIMPLE)
max_area = 0
best_cnt = None
for cnt in contour:
area = cv2.contourArea(cnt)
if area > 1000:
if area > max_area:
max_area = area
best_cnt = cnt
cv2.drawContours(mask,[best_cnt],0,255,-1)
cv2.drawContours(mask,[best_cnt],0,0,2)
res = cv2.bitwise_and(res,mask)
Result :
3. Finding Vertical lines
kernelx = cv2.getStructuringElement(cv2.MORPH_RECT,(2,10))
dx = cv2.Sobel(res,cv2.CV_16S,1,0)
dx = cv2.convertScaleAbs(dx)
cv2.normalize(dx,dx,0,255,cv2.NORM_MINMAX)
ret,close = cv2.threshold(dx,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,kernelx,iterations = 1)
contour, hier = cv2.findContours(close,cv2.RETR_EXTERNAL,cv2.CHAIN_APPROX_SIMPLE)
for cnt in contour:
x,y,w,h = cv2.boundingRect(cnt)
if h/w > 5:
cv2.drawContours(close,[cnt],0,255,-1)
else:
cv2.drawContours(close,[cnt],0,0,-1)
close = cv2.morphologyEx(close,cv2.MORPH_CLOSE,None,iterations = 2)
closex = close.copy()
Result :
4. Finding Horizontal Lines
kernely = cv2.getStructuringElement(cv2.MORPH_RECT,(10,2))
dy = cv2.Sobel(res,cv2.CV_16S,0,2)
dy = cv2.convertScaleAbs(dy)
cv2.normalize(dy,dy,0,255,cv2.NORM_MINMAX)
ret,close = cv2.threshold(dy,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,kernely)
contour, hier = cv2.findContours(close,cv2.RETR_EXTERNAL,cv2.CHAIN_APPROX_SIMPLE)
for cnt in contour:
x,y,w,h = cv2.boundingRect(cnt)
if w/h > 5:
cv2.drawContours(close,[cnt],0,255,-1)
else:
cv2.drawContours(close,[cnt],0,0,-1)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,None,iterations = 2)
closey = close.copy()
Result :
Of course, this one is not so good.
5. Finding Grid Points
res = cv2.bitwise_and(closex,closey)
Result :
6. Correcting the defects
Here, nikie does some kind of interpolation, about which I don't have much knowledge. And i couldn't find any corresponding function for this OpenCV. (may be it is there, i don't know).
Check out this SOF which explains how to do this using SciPy, which I don't want to use : Image transformation in OpenCV
So, here I took 4 corners of each sub-square and applied warp Perspective to each.
For that, first we find the centroids.
contour, hier = cv2.findContours(res,cv2.RETR_LIST,cv2.CHAIN_APPROX_SIMPLE)
centroids = []
for cnt in contour:
mom = cv2.moments(cnt)
(x,y) = int(mom['m10']/mom['m00']), int(mom['m01']/mom['m00'])
cv2.circle(img,(x,y),4,(0,255,0),-1)
centroids.append((x,y))
But resulting centroids won't be sorted. Check out below image to see their order:
So we sort them from left to right, top to bottom.
centroids = np.array(centroids,dtype = np.float32)
c = centroids.reshape((100,2))
c2 = c[np.argsort(c[:,1])]
b = np.vstack([c2[i*10:(i+1)*10][np.argsort(c2[i*10:(i+1)*10,0])] for i in xrange(10)])
bm = b.reshape((10,10,2))
Now see below their order :
Finally we apply the transformation and create a new image of size 450x450.
output = np.zeros((450,450,3),np.uint8)
for i,j in enumerate(b):
ri = i/10
ci = i%10
if ci != 9 and ri!=9:
src = bm[ri:ri+2, ci:ci+2 , :].reshape((4,2))
dst = np.array( [ [ci*50,ri*50],[(ci+1)*50-1,ri*50],[ci*50,(ri+1)*50-1],[(ci+1)*50-1,(ri+1)*50-1] ], np.float32)
retval = cv2.getPerspectiveTransform(src,dst)
warp = cv2.warpPerspective(res2,retval,(450,450))
output[ri*50:(ri+1)*50-1 , ci*50:(ci+1)*50-1] = warp[ri*50:(ri+1)*50-1 , ci*50:(ci+1)*50-1].copy()
Result :
The result is almost same as nikie's, but code length is large. May be, better methods are available out there, but until then, this works OK.
Regards
ARK.
You could try to use some kind of grid based modeling of you arbitrary warping. And since the sudoku already is a grid, that shouldn't be too hard.
So you could try to detect the boundaries of each 3x3 subregion and then warp each region individually. If the detection succeeds it would give you a better approximation.
I thought this was a great post, and a great solution by ARK; very well laid out and explained.
I was working on a similar problem, and built the entire thing. There were some changes (i.e. xrange to range, arguments in cv2.findContours), but this should work out of the box (Python 3.5, Anaconda).
This is a compilation of the elements above, with some of the missing code added (i.e., labeling of points).
'''
https://stackoverflow.com/questions/10196198/how-to-remove-convexity-defects-in-a-sudoku-square
'''
import cv2
import numpy as np
img = cv2.imread('test.png')
winname="raw image"
cv2.namedWindow(winname)
cv2.imshow(winname, img)
cv2.moveWindow(winname, 100,100)
img = cv2.GaussianBlur(img,(5,5),0)
winname="blurred"
cv2.namedWindow(winname)
cv2.imshow(winname, img)
cv2.moveWindow(winname, 100,150)
gray = cv2.cvtColor(img,cv2.COLOR_BGR2GRAY)
mask = np.zeros((gray.shape),np.uint8)
kernel1 = cv2.getStructuringElement(cv2.MORPH_ELLIPSE,(11,11))
winname="gray"
cv2.namedWindow(winname)
cv2.imshow(winname, gray)
cv2.moveWindow(winname, 100,200)
close = cv2.morphologyEx(gray,cv2.MORPH_CLOSE,kernel1)
div = np.float32(gray)/(close)
res = np.uint8(cv2.normalize(div,div,0,255,cv2.NORM_MINMAX))
res2 = cv2.cvtColor(res,cv2.COLOR_GRAY2BGR)
winname="res2"
cv2.namedWindow(winname)
cv2.imshow(winname, res2)
cv2.moveWindow(winname, 100,250)
#find elements
thresh = cv2.adaptiveThreshold(res,255,0,1,19,2)
img_c, contour,hier = cv2.findContours(thresh,cv2.RETR_TREE,cv2.CHAIN_APPROX_SIMPLE)
max_area = 0
best_cnt = None
for cnt in contour:
area = cv2.contourArea(cnt)
if area > 1000:
if area > max_area:
max_area = area
best_cnt = cnt
cv2.drawContours(mask,[best_cnt],0,255,-1)
cv2.drawContours(mask,[best_cnt],0,0,2)
res = cv2.bitwise_and(res,mask)
winname="puzzle only"
cv2.namedWindow(winname)
cv2.imshow(winname, res)
cv2.moveWindow(winname, 100,300)
# vertical lines
kernelx = cv2.getStructuringElement(cv2.MORPH_RECT,(2,10))
dx = cv2.Sobel(res,cv2.CV_16S,1,0)
dx = cv2.convertScaleAbs(dx)
cv2.normalize(dx,dx,0,255,cv2.NORM_MINMAX)
ret,close = cv2.threshold(dx,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,kernelx,iterations = 1)
img_d, contour, hier = cv2.findContours(close,cv2.RETR_EXTERNAL,cv2.CHAIN_APPROX_SIMPLE)
for cnt in contour:
x,y,w,h = cv2.boundingRect(cnt)
if h/w > 5:
cv2.drawContours(close,[cnt],0,255,-1)
else:
cv2.drawContours(close,[cnt],0,0,-1)
close = cv2.morphologyEx(close,cv2.MORPH_CLOSE,None,iterations = 2)
closex = close.copy()
winname="vertical lines"
cv2.namedWindow(winname)
cv2.imshow(winname, img_d)
cv2.moveWindow(winname, 100,350)
# find horizontal lines
kernely = cv2.getStructuringElement(cv2.MORPH_RECT,(10,2))
dy = cv2.Sobel(res,cv2.CV_16S,0,2)
dy = cv2.convertScaleAbs(dy)
cv2.normalize(dy,dy,0,255,cv2.NORM_MINMAX)
ret,close = cv2.threshold(dy,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,kernely)
img_e, contour, hier = cv2.findContours(close,cv2.RETR_EXTERNAL,cv2.CHAIN_APPROX_SIMPLE)
for cnt in contour:
x,y,w,h = cv2.boundingRect(cnt)
if w/h > 5:
cv2.drawContours(close,[cnt],0,255,-1)
else:
cv2.drawContours(close,[cnt],0,0,-1)
close = cv2.morphologyEx(close,cv2.MORPH_DILATE,None,iterations = 2)
closey = close.copy()
winname="horizontal lines"
cv2.namedWindow(winname)
cv2.imshow(winname, img_e)
cv2.moveWindow(winname, 100,400)
# intersection of these two gives dots
res = cv2.bitwise_and(closex,closey)
winname="intersections"
cv2.namedWindow(winname)
cv2.imshow(winname, res)
cv2.moveWindow(winname, 100,450)
# text blue
textcolor=(0,255,0)
# points green
pointcolor=(255,0,0)
# find centroids and sort
img_f, contour, hier = cv2.findContours(res,cv2.RETR_LIST,cv2.CHAIN_APPROX_SIMPLE)
centroids = []
for cnt in contour:
mom = cv2.moments(cnt)
(x,y) = int(mom['m10']/mom['m00']), int(mom['m01']/mom['m00'])
cv2.circle(img,(x,y),4,(0,255,0),-1)
centroids.append((x,y))
# sorting
centroids = np.array(centroids,dtype = np.float32)
c = centroids.reshape((100,2))
c2 = c[np.argsort(c[:,1])]
b = np.vstack([c2[i*10:(i+1)*10][np.argsort(c2[i*10:(i+1)*10,0])] for i in range(10)])
bm = b.reshape((10,10,2))
# make copy
labeled_in_order=res2.copy()
for index, pt in enumerate(b):
cv2.putText(labeled_in_order,str(index),tuple(pt),cv2.FONT_HERSHEY_DUPLEX, 0.75, textcolor)
cv2.circle(labeled_in_order, tuple(pt), 5, pointcolor)
winname="labeled in order"
cv2.namedWindow(winname)
cv2.imshow(winname, labeled_in_order)
cv2.moveWindow(winname, 100,500)
# create final
output = np.zeros((450,450,3),np.uint8)
for i,j in enumerate(b):
ri = int(i/10) # row index
ci = i%10 # column index
if ci != 9 and ri!=9:
src = bm[ri:ri+2, ci:ci+2 , :].reshape((4,2))
dst = np.array( [ [ci*50,ri*50],[(ci+1)*50-1,ri*50],[ci*50,(ri+1)*50-1],[(ci+1)*50-1,(ri+1)*50-1] ], np.float32)
retval = cv2.getPerspectiveTransform(src,dst)
warp = cv2.warpPerspective(res2,retval,(450,450))
output[ri*50:(ri+1)*50-1 , ci*50:(ci+1)*50-1] = warp[ri*50:(ri+1)*50-1 , ci*50:(ci+1)*50-1].copy()
winname="final"
cv2.namedWindow(winname)
cv2.imshow(winname, output)
cv2.moveWindow(winname, 600,100)
cv2.waitKey(0)
cv2.destroyAllWindows()
I want to add that above method works only when sudoku board stands straight, otherwise height/width (or vice versa) ratio test will most probably fail and you will not be able to detect edges of sudoku. (I also want to add that if lines that are not perpendicular to the image borders, sobel operations (dx and dy) will still work as lines will still have edges with respect to both axes.)
To be able to detect straight lines you should work on contour or pixel-wise analysis such as contourArea/boundingRectArea, top left and bottom right points...
Edit: I managed to check whether a set of contours form a line or not by applying linear regression and checking the error. However linear regression performed poorly when slope of the line is too big (i.e. >1000) or it is very close to 0. Therefore applying the ratio test above (in most upvoted answer) before linear regression is logical and did work for me.
To remove undected corners I applied gamma correction with a gamma value of 0.8.
The red circle is drawn to show the missing corner.
The code is:
gamma = 0.8
invGamma = 1/gamma
table = np.array([((i / 255.0) ** invGamma) * 255
for i in np.arange(0, 256)]).astype("uint8")
cv2.LUT(img, table, img)
This is in addition to Abid Rahman's answer if some corner points are missing.