How to use skmultilearn to train models on label specific data - python

I am using skmultilearn library to solve a multi-label machine learning problem. There are 5 labels with binary data (0 or 1). Sklearn logistic regression is being used as base classifier. But I need to set label specific features for each classifier. The label data of one classifier to be used as feature of another classifier.
I am not able to figure out on how to do that.
Any help appreciated.

One-vs-Rest is the method of solving the multi-label problem you are trying to address, it is the transformation type. You just need to generate a different training set for each simple classifier so that you have all the combinations between the original attributes and each of the labels. Pandas can be useful for the manipulation of the data and the generation of the different datasets for each simple classifier. Note that using this strategy in its original form ignores the relationships between the tags.

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How to use KMeans clustering to improve the accuracy of a logistic regression model?

I am a beginner in machine learning in python, and I am working on a binary classification problem. I have implemented a logistic regression model with an average accuracy of around 75%. I have tried numerous ways to improve the accuracy of the model, such as one-hot encoding of categorical variables, scaling of the continuous variables, and I did a grid search to find the best parameters. They all failed to improve the accuracy. So, I looked into unsupervised learning methods in order to improve it.
I tried using KMeans clustering, and I set the n_clusters into 2. I trained the logistic regression model using the X_train and y_train values. After that, I tried testing the model on the training data using cross-validation but I set the cross-validation to be against the labels predicted by the KMeans:
kmeans = KMeans(n_clusters = 2)
kmeans.fit(X_train)
logreg = LogisticRegression().fit(X_train, y_train)
cross_val_score(logreg, X_train, kmeans.labels_, cv = 5)
When using the cross_val_score, the accuracy is averaging over 95%. However, when I use the .score() method:
logreg.score(X_train, kmeans.labels_)
, the score is in the 60s. My questions are:
What does the significance (or meaning) of the score that is produced when testing the model against the labels predicted by k-means?
How can I use k-means clustering to improve the accuracy of the model? I tried adding a 'cluster' column that contains the clustering labels to the training data and fit the logistic regression, but it also didn't improve the score.
Why is there a huge discrepancy between the score when evaluated via cross_val_predict and the .score() method?
I'm having a hard time understanding the context of your problem based on the snippet you provided. Strong work for providing minimal code, but in this case I feel it may have been a bit too minimal. Regardless, I'm going to read between the lines and state some relevent ideas. I'll then attempt to answer your questions more directly.
I am working on a binary classification problem. I have implemented a logistic regression model with an average accuracy of around 75%
This only tells a small amount of the story. knowing what data your classifying and it's general form is pretty vital, and accuracy doesn't tell us a lot about how innaccuracy is distributed through the problem.
Some natural questions:
Is one class 50% accurate and another class is 100% accurate? are the classes both 75% accurate?
what is the class balance? (is there more of one class than the other)?
how much overlap do these classes have?
I recommend profiling your training and testing set, and maybe running your data through TSNE to get an idea of class overlap in your vector space.
these plots will give you an idea of how much overlap your two classes have. In essence, TSNE maps a high dimensional X to a 2d X while attempting to preserve proximity. You can then plot your flagged Y values as color and the 2d X values as points on a grid to get an idea of how tightly packed your classes are in high dimensional space. In the image above, this is a very easy classification problem as each class exists in it's own island. The more these islands mix together, the harder classification will be.
did a grid search to find the best parameters
hot take, but don't use grid search, random search is better. (source Artificial Intelligence by Jones and Barlett). Grid search repeats too much information, wasting time re-exploring similar parameters.
I tried using KMeans clustering, and I set the n_clusters into 2. I trained the logistic regression model using the X_train and y_train values. After that, I tried testing the model on the training data using cross-validation but I set the cross-validation to be against the labels predicted by the KMeans:
So, to rephrase, you trained your model to predict an output given some input, then tested how it performed predicting the same data and got 75%. This is called training accuracy (as opposed to validation or test accuracy). A low training accuracy is indicative of one of two things:
there's a lot of overlap between your classes. If this is the case, I would look into feature engineering. Find a vector space which better segregates the two classes.
there's not a lot of overlap, but the front between the two classes is complex. You need a model with more parameters to segregate your two classes.
model complexity isn't free though. See the curse of dimensionality and overfitting.
ok, answering more directly
these accuracy scores mean your model isn't complex enough to learn the problem, or there's too much overlap between the two classes to see a better accuracy.
I wouldn't use k-means clustering to try to improve this. k-means attempts to find cluster information based on location in a vector space, but you already have flagged data y_train so you already know which clusters data should belong in. Try modifying X_train in some way to get better segregation, or try a more complex model. you can use things like k-means or TSNE to check your transformed X_train for better segregation, but I wouldn't use them directly. Obligatory reminder that you need to test and validate with holdout data. see another answer I provided for more info.
I'd need more code to figure that one out.
p.s. welcome to stack overflow! Keep at it.

How to handle text classification problems when multiple features are involved

I am working on a text classification problem where multiple text features and need to build a model to predict salary range. Please refer the Sample dataset
Most of the resources/tutorials deal with feature extraction on only one column and then predicting target. I am aware of the processes such as text pre-processing, feature extraction (CountVectorizer or TF-IDF) and then the applying algorithms.
In this problem, I have multiple input text features. How to handle text classification problems when multiple features are involved? These are the methods I have already tried but I am not sure if these are the right methods. Kindly provide your inputs/suggestion.
1) Applied data cleaning on each feature separately followed by TF-IDF and then logistic regression. Here I tried to see if I can use only one feature for classification.
2) Applied Data cleaning on all the columns separately and then applied TF-IDF for each feature and then merged the all feature vectors to create only one feature vector. Finally logistic regression.
3) Applied Data cleaning on all the columns separately and merged all the cleaned columns to create one feature 'merged_text'. Then applied TF-IDF on this merged_text and followed by logistic regression.
All these 3 methods gave me around 35-40% accuracy on cross-validation & test set. I am expecting at-least 60% accuracy on the test set which is not provided.
Also, I didn't understand how use to 'company_name' & 'experience' with text data. there are about 2000+ unique values in company_name. Please provide input/pointer on how to handle numeric data in text classification problem.
Try these things:
Apply text preprocessing on 'job description', 'job designation' and 'key skills. Remove all stop words, separate each words removing punctuations, lowercase all words then apply TF-IDF or Count Vectorizer, don't forget to scale these features before training model.
Convert Experience to Minimum experience and Maximum experience 2 features and treat is as a discrete numeric feature.
Company and location can be treated as a categorical feature and create dummy variable/one hot encoding before training the model.
Try combining job type and key skills and then do vectorization, see how if it works better.
Use Random Forest Regressor, tune hyperparameters: n_estimators, max_depth, max_features using GridCV.
Hopefully, these will increase the performance of the model.
Let me know how is it performing with these.

sklearn: Naive Bayes classifier gives low accuracy

I have a dataset which includes 200000 labelled training examples.
For each training example I have 10 features, including both continuous and discrete.
I'm trying to use sklearn package of python in order to train the model and make predictions but I have some troubles (and some questions too).
First let me write the code which I have written so far:
from sklearn.naive_bayes import GaussianNB
# data contains the 200 000 examples
# targets contain the corresponding labels for each training example
gnb = GaussianNB()
gnb.fit(data, targets)
predicted = gnb.predict(data)
The problem is that I get really low accuracy (too many misclassified labels) - around 20%.
However I am not quite sure whether there is a problem with the data (e.g. more data is needed or something else) or with the code.
Is this the proper way to implement a Naive Bayes classifier given a dataset with both discrete and continuous features?
Furthermore, in Machine Learning we know that the dataset should be split into training and validation/testing sets. Is this automatically performed by sklearn or should I fit the model using the training dataset and then call predict using the validation set?
Any thoughts or suggestions will be much appreciated.
The problem is that I get really low accuracy (too many misclassified labels) - around 20%. However I am not quite sure whether there is a problem with the data (e.g. more data is needed or something else) or with the code.
This is not big error for Naive Bayes, this is extremely simple classifier and you should not expect it to be strong, more data probably won't help. Your gaussian estimators are probably already very good, simply Naive assumptions are the problem. Use stronger model. You can start with Random Forest since it is very easy to use even by non-experts in the field.
Is this the proper way to implement a Naive Bayes classifier given a dataset with both discrete and continuous features?
No, it is not, you should use different distributions in discrete features, however scikit-learn does not support that, you would have to do this manually. As said before - change your model.
Furthermore, in Machine Learning we know that the dataset should be split into training and validation/testing sets. Is this automatically performed by sklearn or should I fit the model using the training dataset and then call predict using the validation set?
Nothing is done automatically in this manner, you need to do this on your own (scikit learn has lots of tools for that - see the cross validation pacakges).

Retrieve list of training features names from classifier

Is there a way to retrieve the list of feature names used for training of a classifier, once it has been trained with the fit method? I would like to get this information before applying to unseen data.
The data used for training is a pandas DataFrame and in my case, the classifier is a RandomForestClassifier.
I have a solution which works but is not very elegant. This is an old post with no existing solutions so I suppose there are not any.
Create and fit your model. For example
model = GradientBoostingRegressor(**params)
model.fit(X_train, y_train)
Then you can add an attribute which is the 'feature_names' since you know them at training time
model.feature_names = list(X_train.columns.values)
I typically then put the model into a binary file to pass it around but you can ignore this
joblib.dump(model, filename)
loaded_model = joblib.load(filename)
Then you can get the feature names back from the model to use them when you predict
f_names = loaded_model.feature_names
loaded_model.predict(X_pred[f_names])
Based on the documentation and previous experience, there is no way to get a list of the features considered at least at one of the splitting.
Is your concern that you do not want to use all your features for prediction, just the ones actually used for training? In this case I suggest to list the feature_importances_ after fitting and eliminate the features that does not seem relevant. Then train a new model with only the relevant features and use those features for prediction as well.
You don't need to know which features were selected for the training. Just make sure to give, during the prediction step, to the fitted classifier the same features you used during the learning phase.
The Random Forest Classifier will only use the features on which it makes its splits. Those will be the same as those learnt during the first phase. Others won't be considered.
If the shape of your test data is not the same as the training data it will throw an error, even if the test data contains all the features used for the splits of you decision trees.
What's more, since Random Forests make random selection of features for your decision trees (called estimators in sklearn) all the features are likely to be used at least once.
However, if you want to know the features used, you can just call the attributes n_features_ and feature_importances_ on your classifier once fitted.
You can look here to see how you can retrieve the names of the most important features you used.
You can extract feature names from a trained XGBOOST model as follows:
model.get_booster().feature_names

how to predict binary outcome with categorical and continuous features using scikit-learn?

I need advice choosing a model and machine learning algorithm for a classification problem.
I'm trying to predict a binary outcome for a subject. I have 500,000 records in my data set and 20 continuous and categorical features. Each subject has 10--20 records. The data is labeled with its outcome.
So far I'm thinking logistic regression model and kernel approximation, based on the cheat-sheet here.
I am unsure where to start when implementing this in either R or Python.
Thanks!
Choosing an algorithm and optimizing the parameter is a difficult task in any data mining project. Because it must customized for your data and problem. Try different algorithm like SVM,Random Forest, Logistic Regression, KNN and... and test Cross Validation for each of them and then compare them.
You can use GridSearch in sickit learn to try different parameters and optimize the parameters for each algorithm. also try this project
witch test a range of parameters with genetic algorithm
Features
If your categorical features don't have too many possible different values, you might want to have a look at sklearn.preprocessing.OneHotEncoder.
Model choice
The choice of "the best" model depends mainly on the amount of available training data and the simplicity of the decision boundary you expect to get.
You can try dimensionality reduction to 2 or 3 dimensions. Then you can visualize your data and see if there is a nice decision boundary.
With 500,000 training examples you can think about using a neural network. I can recommend Keras for beginners and TensorFlow for people who know how neural networks work.
You should also know that there are Ensemble methods.
A nice cheat sheet what to use is on in the sklearn tutorial you already found:
(source: scikit-learn.org)
Just try it, compare different results. Without more information it is not possible to give you better advice.

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