How to rewrite a makefile to distutils.core.Extension - python

I have the following makefile:
g++ -o OUTPUT runner.cpp main.cpp src/file1.cpp src/file2.cpp
-L/usr/local/cpp_gpu/lib
-lopencv_gapi -lopencv_stitching -lopencv_aruco -lopencv_bgsegm -lopencv_bioinspired -lopencv_ccalib -lopencv_cudabgsegm -lopencv_cudafeatures2d -lopencv_cudaobjdetect -lopencv_cudastereo -lopencv_dnn_objdetect -lopencv_dnn_superres -lopencv_dpm -lopencv_face -lopencv_freetype -lopencv_fuzzy -lopencv_hdf -lopencv_hfs -lopencv_img_hash -lopencv_intensity_transform -lopencv_line_descriptor -lopencv_mcc -lopencv_quality -lopencv_rapid -lopencv_reg -lopencv_rgbd -lopencv_saliency -lopencv_stereo -lopencv_structured_light -lopencv_phase_unwrapping -lopencv_superres -lopencv_surface_matching -lopencv_tracking -lopencv_highgui -lopencv_datasets -lopencv_text -lopencv_plot -lopencv_videostab -lopencv_cudaoptflow -lopencv_optflow -lopencv_cudalegacy -lopencv_videoio -lopencv_cudawarping -lopencv_xfeatures2d -lopencv_shape -lopencv_ml -lopencv_ximgproc -lopencv_video -lopencv_dnn -lopencv_xobjdetect -lopencv_objdetect -lopencv_calib3d -lopencv_imgcodecs -lopencv_features2d -lopencv_flann -lopencv_xphoto -lopencv_photo -lopencv_cudaimgproc -lopencv_cudafilters -lopencv_imgproc -lopencv_cudaarithm -lopencv_core -lopencv_cudev -ldl -lm -lpthread -lrt
-L/usr/local/cuda/lib64
-lcudart -lnppc -lnppial -lnppicc -lnppicom -lnppidei -lnppif -lnppig -lnppim -lnppist -lnppisu -lnppitc -lnpps -lcublas -lcudnn -lcufft
-I/usr/local/cpp_gpu/include/opencv4
I want to rewrite this to a Extension of distutils.core so that it later on can be used in a Cython setup. The documentation is a little unclear about how I should do this. This is what I got thus far (in setup.py).
includes_dirs = [numpy.get_include(), '/usr/local/cpp_gpu/lib', '/usr/local/cuda/lib64']
library_dirs = ['/usr/local/cpp_gpu/include/opencv4']
args = ['-Wno-cpp']
files = ["src/file1.cpp", "src/file2.cpp", "main.cpp", "OUTPUT.pyx"]
libraries = ['opencv_gapi', 'opencv_stitching', 'opencv_aruco', 'opencv_bgsegm', 'opencv_bioinspired', 'opencv_ccalib',
'opencv_cudabgsegm', 'opencv_cudafeatures2d', 'opencv_cudaobjdetect', 'opencv_cudastereo', 'opencv_dnn_objdetect',
'opencv_dnn_superres', 'opencv_dpm', 'opencv_face', 'opencv_freetype', 'opencv_fuzzy', 'opencv_hdf', 'opencv_hfs',
'opencv_img_hash', 'opencv_intensity_transform', 'opencv_line_descriptor', 'opencv_mcc', 'opencv_quality',
'opencv_rapid', 'opencv_reg', 'opencv_rgbd', 'opencv_saliency', 'opencv_stereo', 'opencv_structured_light',
'opencv_phase_unwrapping', 'opencv_superres', 'opencv_surface_matching', 'opencv_tracking', 'opencv_highgui',
'opencv_datasets', 'opencv_text', 'opencv_plot', 'opencv_videostab', 'opencv_cudaoptflow', 'opencv_optflow',
'opencv_cudalegacy', 'opencv_videoio', 'opencv_cudawarping', 'opencv_xfeatures2d', 'opencv_shape', 'opencv_ml',
'opencv_ximgproc', 'opencv_video', 'opencv_dnn', 'opencv_xobjdetect', 'opencv_objdetect', 'opencv_calib3d',
'opencv_imgcodecs', 'opencv_features2d', 'opencv_flann', 'opencv_xphoto', 'opencv_photo', 'opencv_cudaimgproc',
'opencv_cudafilters', 'opencv_imgproc', 'opencv_cudaarithm', 'opencv_core', 'opencv_cudev', 'dl', 'm', 'pthread', 'rt']
libraries += ['cudart', 'nppc', 'nppial', 'nppicc', 'nppicom', 'nppidei', 'nppif', 'nppig', 'nppim', 'nppist', 'nppisu',
'nppitc', 'npps', 'cublas', 'cudnn', 'cufft ']
ext_modules = [Extension(
"OUTPUT",
files,
language='c++',
include_dirs=includes_dirs,
library_dirs=library_dirs,
extra_compile_args=args,
libraries=libraries
)]
The compilation however fails with the error message (works fine if used with the makefile):
src/file1.hpp:7:34: fatal error: opencv2/cudaarithm.hpp: No such file or directory
#include <opencv2/cudaarithm.hpp>


I found the problem the include dirs and library dirs should be switched:
includes_dirs = [numpy.get_include(), '/usr/local/cpp_gpu/include/opencv4']
library_dirs = ['/usr/local/cpp_gpu/lib', '/usr/local/cuda/lib64']

Related

"configure: error: C compiler cannot create executables" When trying to upgrade Python to latest version

New at this so please bare with me. Following these instructions trying update to the latest version of Python
https://www.vultr.com/docs/update-python3-on-centos/
I get all the way to step 2.5 and get the following:
[user1#localhost Python-3.9.6]$ ./configure --enable-optimizations
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for python3.9... no
checking for python3... python3
checking for --enable-universalsdk... no
checking for --with-universal-archs... no
checking MACHDEP... "linux"
checking for gcc... gcc
checking whether the C compiler works... no
configure: error: in `/home/user1/Python-3.9.6':
configure: error: C compiler cannot create executables
See `config.log' for more details
My config.log file
## --------- ##
## Platform. ##
## --------- ##
hostname = localhost.localdomain
uname -m = x86_64
uname -r = 3.10.0-1160.76.1.el7.x86_64
uname -s = Linux
uname -v = #1 SMP Wed Aug 10 16:21:17 UTC 2022
/usr/bin/uname -p = x86_64
/bin/uname -X = unknown
/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /opt/rh/devtoolset-8/root/usr/bin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /usr/local/sbin
PATH: /usr/sbin
PATH: /home/user1/.local/bin
PATH: /home/user1/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2848: checking build system type
configure:2862: result: x86_64-pc-linux-gnu
configure:2882: checking host system type
configure:2895: result: x86_64-pc-linux-gnu
configure:2925: checking for python3.9
configure:2955: result: no
configure:2925: checking for python3
configure:2941: found /usr/bin/python3
configure:2952: result: python3
configure:3046: checking for --enable-universalsdk
configure:3093: result: no
configure:3117: checking for --with-universal-archs
configure:3132: result: no
configure:3288: checking MACHDEP
configure:3339: result: "linux"
configure:3633: checking for gcc
configure:3649: found /opt/rh/devtoolset-8/root/usr/bin/gcc
configure:3660: result: gcc
configure:3889: checking for C compiler version
configure:3898: gcc --version >&5
gcc (GCC) 8.3.1 20190311 (Red Hat 8.3.1-3)
Copyright (C) 2018 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3909: $? = 0
configure:3898: gcc -v >&5
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/opt/rh/devtoolset-8/root/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/opt/rh/devtoolset-8/root/usr --mandir=/opt/rh/devtoolset-8/root/usr/share/man --infodir=/opt/rh/devtoolset-8/root/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --with-default-libstdcxx-abi=gcc4-compatible --enable-plugin --enable-initfini-array --with-isl=/builddir/build/BUILD/gcc-8.3.1-20190311/obj-x86_64-redhat-linux/isl-install --disable-libmpx --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
Thread model: posix
gcc version 8.3.1 20190311 (Red Hat 8.3.1-3) (GCC)
configure:3909: $? = 0
configure:3898: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3909: $? = 1
configure:3898: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:3909: $? = 1
configure:3929: checking whether the C compiler works
configure:3951: gcc conftest.c >&5
/lib/../lib64/crt1.o: file not recognized: File truncated
collect2: error: ld returned 1 exit status
configure:3955: $? = 1
configure:3993: result: no
configure: failed program was:
| /* confdefs.h */
| #define _GNU_SOURCE 1
| #define _NETBSD_SOURCE 1
| #define __BSD_VISIBLE 1
| #define _DARWIN_C_SOURCE 1
| #define _PYTHONFRAMEWORK ""
| #define _XOPEN_SOURCE 700
| #define _XOPEN_SOURCE_EXTENDED 1
| #define _POSIX_C_SOURCE 200809L
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:3998: error: in `/home/user1/Python-3.9.6':
configure:4000: error: C compiler cannot create executables
See `config.log' for more details
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-pc-linux-gnu
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_MACHDEP_set=
ac_cv_env_MACHDEP_value=
ac_cv_env_PKG_CONFIG_LIBDIR_set=
ac_cv_env_PKG_CONFIG_LIBDIR_value=
ac_cv_env_PKG_CONFIG_PATH_set=set
ac_cv_env_PKG_CONFIG_PATH_value=/opt/rh/devtoolset-8/root/usr/lib64/pkgconfig
ac_cv_env_PKG_CONFIG_set=
ac_cv_env_PKG_CONFIG_value=
ac_cv_env_PROFILE_TASK_set=
ac_cv_env_PROFILE_TASK_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_prog_PYTHON_FOR_REGEN=python3
ac_cv_prog_ac_ct_CC=gcc
## ----------------- ##
## Output variables. ##
## ----------------- ##
ABIFLAGS=''
ALT_SOABI=''
AR=''
ARCH_RUN_32BIT=''
ARFLAGS=''
BASECFLAGS=''
BASECPPFLAGS=''
BINLIBDEST=''
BLDLIBRARY=''
BLDSHARED=''
BUILDEXEEXT=''
CC='gcc'
CCSHARED=''
CFLAGS=''
CFLAGSFORSHARED=''
CFLAGS_ALIASING=''
CFLAGS_NODIST=''
CONFIGURE_MACOSX_DEPLOYMENT_TARGET=''
CONFIG_ARGS=' '\''--enable-optimizations'\'' '\''PKG_CONFIG_PATH=/opt/rh/devtoolset-8/root/usr/lib64/pkgconfig'\'''
CPP=''
CPPFLAGS=''
CXX=''
DEFS=''
DEF_MAKE_ALL_RULE=''
DEF_MAKE_RULE=''
DFLAGS=''
DLINCLDIR=''
DLLLIBRARY=''
DTRACE=''
DTRACE_HEADERS=''
DTRACE_OBJS=''
DYNLOADFILE=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
ENSUREPIP=''
EXEEXT=''
EXPORTSFROM=''
EXPORTSYMS=''
EXPORT_MACOSX_DEPLOYMENT_TARGET='#'
EXT_SUFFIX=''
FRAMEWORKALTINSTALLFIRST=''
FRAMEWORKALTINSTALLLAST=''
FRAMEWORKINSTALLAPPSPREFIX=''
FRAMEWORKINSTALLFIRST=''
FRAMEWORKINSTALLLAST=''
FRAMEWORKPYTHONW=''
FRAMEWORKUNIXTOOLSPREFIX='/usr/local'
GITBRANCH=''
GITTAG=''
GITVERSION=''
GNULD=''
GREP=''
HAS_GIT='no-repository'
HAVE_GETHOSTBYNAME=''
HAVE_GETHOSTBYNAME_R=''
HAVE_GETHOSTBYNAME_R_3_ARG=''
HAVE_GETHOSTBYNAME_R_5_ARG=''
HAVE_GETHOSTBYNAME_R_6_ARG=''
INSTALL_DATA=''
INSTALL_PROGRAM=''
INSTALL_SCRIPT=''
INSTSONAME=''
LDCXXSHARED=''
LDFLAGS=''
LDFLAGS_NODIST=''
LDLIBRARY=''
LDLIBRARYDIR=''
LDSHARED=''
LDVERSION=''
LIBC=''
LIBFFI_INCLUDEDIR=''
LIBM=''
LIBOBJS=''
LIBPL=''
LIBPYTHON=''
LIBRARY=''
LIBS=''
LIBTOOL_CRUFT=''
LINKCC=''
LINKFORSHARED=''
LIPO_32BIT_FLAGS=''
LIPO_INTEL64_FLAGS=''
LLVM_AR=''
LLVM_AR_FOUND=''
LLVM_PROFDATA=''
LLVM_PROF_ERR=''
LLVM_PROF_FILE=''
LLVM_PROF_FOUND=''
LLVM_PROF_MERGER=''
LN=''
LTLIBOBJS=''
MACHDEP='linux'
MACHDEP_OBJS=''
MAINCC=''
MKDIR_P=''
MULTIARCH=''
MULTIARCH_CPPFLAGS=''
NO_AS_NEEDED=''
OBJEXT=''
OPENSSL_INCLUDES=''
OPENSSL_LDFLAGS=''
OPENSSL_LIBS=''
OPT=''
OTHER_LIBTOOL_OPT=''
PACKAGE_BUGREPORT='https://bugs.python.org/'
PACKAGE_NAME='python'
PACKAGE_STRING='python 3.9'
PACKAGE_TARNAME='python'
PACKAGE_URL=''
PACKAGE_VERSION='3.9'
PATH_SEPARATOR=':'
PGO_PROF_GEN_FLAG=''
PGO_PROF_USE_FLAG=''
PKG_CONFIG=''
PKG_CONFIG_LIBDIR=''
PKG_CONFIG_PATH='/opt/rh/devtoolset-8/root/usr/lib64/pkgconfig'
PLATFORM_TRIPLET=''
PLATLIBDIR=''
PROFILE_TASK=''
PY3LIBRARY=''
PYTHONFRAMEWORK=''
PYTHONFRAMEWORKDIR='no-framework'
PYTHONFRAMEWORKIDENTIFIER='org.python.python'
PYTHONFRAMEWORKINSTALLDIR=''
PYTHONFRAMEWORKPREFIX=''
PYTHON_FOR_BUILD='./$(BUILDPYTHON) -E'
PYTHON_FOR_REGEN='python3'
PY_ENABLE_SHARED=''
READELF=''
RUNSHARED=''
SED=''
SHELL='/bin/sh'
SHLIBS=''
SHLIB_SUFFIX=''
SOABI=''
SOVERSION='1.0'
SRCDIRS=''
TCLTK_INCLUDES=''
TCLTK_LIBS=''
THREADHEADERS=''
TRUE=''
TZPATH=''
UNIVERSALSDK=''
UNIVERSAL_ARCH_FLAGS=''
VERSION='3.9'
_PYTHON_HOST_PLATFORM=''
ac_ct_AR=''
ac_ct_CC='gcc'
ac_ct_CXX=''
ac_ct_READELF=''
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-pc-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define _GNU_SOURCE 1
#define _NETBSD_SOURCE 1
#define __BSD_VISIBLE 1
#define _DARWIN_C_SOURCE 1
#define _PYTHONFRAMEWORK ""
#define _XOPEN_SOURCE 700
#define _XOPEN_SOURCE_EXTENDED 1
#define _POSIX_C_SOURCE 200809L
configure: exit 77
Is there something that I need to install within my Linux (Centos 7) to get this to work?
My current Python Version is 3.6.8

Build failed for python 3.5.1 on Cygwin (Could not allocate TLS entry)

I've been trying to make python build from sources through cygwin64 on windows7. I've ran into some issues I've been able to fix but I'm stuck on this one.
I get a "Fatal python error: Could not allocate TLS entry".
Here's the end of the build logs.
gcc -c -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g - fwrapv -O3 -Wall -Wstrict-prototypes -Werror=declaration-after-statement -I. -IInclude -I./Include -I/home/mcharron/.pyenv/versions/3.5.1/include -I/home/mcharron/.pyenv/versions/3.5.1/include -DPy_BUILD_CORE \
-DHGVERSION="\"`LC_ALL=C `\"" \
-DHGTAG="\"`LC_ALL=C `\"" \
-DHGBRANCH="\"`LC_ALL=C `\"" \
-o Modules/getbuildinfo.o ./Modules/getbuildinfo.c
gcc -L/home/mcharron/.pyenv/versions/3.5.1/lib -L/home/mcharron/.pyenv/versions/3.5.1/lib -o Programs/_freeze_importlib Programs/_freeze_importlib.o Modules/getbuildinfo.o Parser/acceler.o Parser/grammar1.o Parser/listnode.o Parser/node.o Parser/parser.o Parser/bitset.o Parser/metagrammar.o Parser/firstsets.o Parser/grammar.o Parser/pgen.o Parser/myreadline.o Parser/parsetok.o Parser/tokenizer.o Objects/abstract.o Objects/accu.o Objects/boolobject.o Objects/bytes_methods.o Objects/bytearrayobject.o Objects/bytesobject.o Objects/cellobject.o Objects/classobject.o Objects/codeobject.o Objects/complexobject.o Objects/descrobject.o Objects/enumobject.o Objects/exceptions.o Objects/genobject.o Objects/fileobject.o Objects/floatobject.o Objects/frameobject.o Objects/funcobject.o Objects/iterobject.o Objects/listobject.o Objects/longobject.o Objects/dictobject.o Objects/odictobject.o Objects/memoryobject.o Objects/methodobject.o Objects/moduleobject.o Objects/namespaceobject.o Objects/object.o Objects/obmalloc.o Objects/capsule.o Objects/rangeobject.o Objects/setobject.o Objects/sliceobject.o Objects/structseq.o Objects/tupleobject.o Objects/typeobject.o Objects/unicodeobject.o Objects/unicodectype.o Objects/weakrefobject.o Python/_warnings.o Python/Python-ast.o Python/asdl.o Python/ast.o Python/bltinmodule.o Python/ceval.o Python/compile.o Python/codecs.o Python/dynamic_annotations.o Python/errors.o Python/frozenmain.o Python/future.o Python/getargs.o Python/getcompiler.o Python/getcopyright.o Python/getplatform.o Python/getversion.o Python/graminit.o Python/import.o Python/importdl.o Python/marshal.o Python/modsupport.o Python/mystrtoul.o Python/mysnprintf.o Python/peephole.o Python/pyarena.o Python/pyctype.o Python/pyfpe.o Python/pyhash.o Python/pylifecycle.o Python/pymath.o Python/pystate.o Python/pythonrun.o Python/pytime.o Python/random.o Python/structmember.o Python/symtable.o Python/sysmodule.o Python/traceback.o Python/getopt.o Python/pystrcmp.o Python/pystrtod.o Python/pystrhex.o Python/dtoa.o Python/formatter_unicode.o Python/fileutils.o Python/dynload_shlib.o Python/thread.o Modules/config.o Modules/getpath.o Modules/main.o Modules/gcmodule.o Modules/_threadmodule.o Modules/signalmodule.o Modules/posixmodule.o Modules/errnomodule.o Modules/pwdmodule.o Modules/_sre.o Modules/_codecsmodule.o Modules/_weakref.o Modules/_functoolsmodule.o Modules/_operator.o Modules/_collectionsmodule.o Modules/itertoolsmodule.o Modules/atexitmodule.o Modules/_stat.o Modules/timemodule.o Modules/_localemodule.o Modules/_iomodule.o Modules/iobase.o Modules/fileio.o Modules/bytesio.o Modules/bufferedio.o Modules/textio.o Modules/stringio.o Modules/zipimport.o Modules/faulthandler.o Modules/_tracemalloc.o Modules/hashtable.o Modules/symtablemodule.o Modules/xxsubtype.o -ldl -lm
./Programs/_freeze_importlib \
./Lib/importlib/_bootstrap.py Python/importlib.h
./Programs/_freeze_importlib \
./Lib/importlib/_bootstrap_external.py Python/importlib_external.h
Fatal Python error: Could not allocate TLS entry
Fatal Python error: Could not allocate TLS entry
Stack trace:
Frame Function Args
000FFFFC2E0 001800719AC (000FFFFE3F4, 0000000ECD0, 7FEFCE851A8, 000FFFFDE50)
000FFFFC380 00180072F8B (00000000001, 00000000000, 000000000E8, 00000000000)
000FFFFC5D0 001801343E8 (001800C78E9, 00000000000, 7FEFD051430, 00000000000)
000FFFFC8C0 001801310BE (0000000D0BD, 00000000000, 00000000000, 00100636B54)
000FFFFC9E0 00180131539 (000FFFFC900, 00000000000, 00000000000, 00000000006)
000FFFFC9E0 0018013170A (0018020BB68, 00100636B3E, 001FFFFC9C8, 00000000000)
000FFFFC9E0 001801319CF (0018012CDEB, 00100637665, 001801523A0, 00000000000)
000FFFFC9E0 0010052A23E (0010052B4C7, 006000104D8, 00000000000, 00000000000)
00000000001 0010052CC6C (00000000000, 00000000000, 006000104D8, 00000000000)
00000000001 0010052AB86 (00000000000, 001801D4120, 000FFFFCBB0, 00100000001)
00180351670 001005A0241 (00000000000, 00000000000, 00000000030, 30001010100FF00)
000FFFFCCC0 00180047BD2 (00000000000, 00000000000, 00000000000, 00000000000)
00000000000 0018004591C (00000000000, 00000000000, 00000000000, 00000000000)
000FFFFFFF0 001800459B4 (00000000000, 00000000000, 00000000000, 00000000000)
End of stack trace
Makefile:729 : la recette pour la cible « Python/importlib_external.h » a échouée
make: *** [Python/importlib_external.h] Aborted (core dump créé)
make: *** Attente des tâches non terminées....
Makefile:733 : la recette pour la cible « Python/importlib.h » a échouée
make: *** [Python/importlib.h] Aborted (core dump créé)
Has anyone seen this or has a workaround?
Thanks!

Sphinx3 compilation error

I am trying to use sphinx for the first time. I'm using sphinx3 because I need s3_aligner so I followed many tutorials but none of them got me a result I always get this error :
**configure: error: in `/Users/Bassem/downloads/cmusphinx/sphinxbase':
configure: error:
Could not link test program to Python. Maybe the main Python library has been
installed in some non-standard library path. If so, pass it to configure,
via the LDFLAGS environment variable.
Example: ./configure LDFLAGS="-L/usr/non-standard-path/python/lib"
============================================================================
ERROR!
You probably have to install the development version of the Python package
for your distribution. The exact name of this package varies among them.
===========================================================================**
I tried so many solution but none of them helped me out all the solutions give the same error .There is a solution for ubuntu which is python-dev for easy linking . I need something equivalent to it on mac or anything to solve me the problem
Here is my config.log:
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-apple-darwin15.3.0
ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_file__Users_Bassem_downloads_cmusphinx_sphinx3____sphinxbase_include_sphinxbase_prim_type_h=yes
ac_cv_file__Users_Bassem_downloads_cmusphinx_sphinx3____sphinxbase_src_libsphinxbase_libsphinxbase_la=no
ac_cv_func_bcopy=yes
ac_cv_func_memmove=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_sphinxbase_sphinx_config_h=no
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-apple-darwin15.3.0
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_FGREP='/usr/bin/grep -F'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_SED=/usr/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_lt_DD=/bin/dd
ac_cv_prog_AWK=awk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_DSYMUTIL=dsymutil
ac_cv_prog_ac_ct_LIPO=lipo
ac_cv_prog_ac_ct_NMEDIT=nmedit
ac_cv_prog_ac_ct_OTOOL=otool
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_strerror='none required'
ac_cv_type_signal=void
ac_cv_type_size_t=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
am_cv_prog_cc_stdc=
cc_cv_attribute_visibility=yes
lt_cv_apple_cc_single_mod=yes
lt_cv_ar_at_file=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_exported_symbols_list=yes
lt_cv_ld_force_load=yes
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
lt_cv_path_NM=/usr/bin/nm
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_pic='-fno-common -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_rtti_exceptions=yes
lt_cv_prog_compiler_static_works=no
lt_cv_prog_gnu_ld=no
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_global_symbol_to_import=
lt_cv_sys_max_cmd_len=196608
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
lt_cv_truncate_bin='/bin/dd bs=4096 count=1'
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /Users/Bassem/downloads/cmusphinx/sphinx3/missing aclocal-1.15'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AUTOCONF='${SHELL} /Users/Bassem/downloads/cmusphinx/sphinx3/missing autoconf'
AUTOHEADER='${SHELL} /Users/Bassem/downloads/cmusphinx/sphinx3/missing autoheader'
AUTOMAKE='${SHELL} /Users/Bassem/downloads/cmusphinx/sphinx3/missing automake-1.15'
AWK='awk'
CC='gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2 -Wall -fvisibility=hidden'
CPP='gcc -E'
CPPFLAGS='-I/Users/Bassem/downloads/cmusphinx/sphinx3/../sphinxbase/include '
CSH=''
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL='dsymutil'
DUMPBIN=''
ECHO_C='\c'
ECHO_N=''
ECHO_T=''
EGREP='/usr/bin/grep -E'
EXEEXT=''
FGREP='/usr/bin/grep -F'
GREP='/usr/bin/grep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld'
LDFLAGS=''
LIBOBJS=''
LIBS=''
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO='lipo'
LN_S='ln -s'
LTLIBOBJS=''
LT_SYS_LIBRARY_PATH=''
MAKEINFO='${SHELL} /Users/Bassem/downloads/cmusphinx/sphinx3/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='./install-sh -c -d'
NM='/usr/bin/nm'
NMEDIT='nmedit'
OBJDUMP='false'
OBJEXT='o'
OTOOL64=':'
OTOOL='otool'
PACKAGE='sphinx3'
PACKAGE_BUGREPORT=''
PACKAGE_NAME='sphinx3'
PACKAGE_STRING='sphinx3 0.7'
PACKAGE_TARNAME='sphinx3'
PACKAGE_URL=''
PACKAGE_VERSION='0.7'
PATH_SEPARATOR=':'
PERL=''
RANLIB='ranlib'
SED='/usr/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='strip'
VERSION='0.7'
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_DUMPBIN=''
ad_backend=''
ad_files=''
ad_libs=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-apple-darwin15.3.0'
build_alias=''
build_cpu='x86_64'
build_os='darwin15.3.0'
build_vendor='apple'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdata='./.DS_Store ./BN_AM_HUB96-97.doc ./BN_AM_HUB96-97.htm ./cmdhelp.txt ./doxygen.cfg ./doxygen.main ./images/rarrow.gif ./index.html ./models.html ./rarrow.gif ./s3/falign.fig ./s3/falign.gif ./s3/feat.fig ./s3/feat.gif ./s3/hypseg.txt ./s3-2.htm ./s3-2.pdf ./s3-2.ppt ./s3-2_files/buttons.gif ./s3-2_files/error.htm ./s3-2_files/filelist.xml ./s3-2_files/frame.htm ./s3-2_files/fullscreen.htm ./s3-2_files/master01.htm ./s3-2_files/master02.htm ./s3-2_files/master03.htm ./s3-2_files/master03.xml ./s3-2_files/master03_image002.gif ./s3-2_files/master03_stylesheet.css ./s3-2_files/outline.htm ./s3-2_files/pres.xml ./s3-2_files/preview.wmf ./s3-2_files/script.js ./s3-2_files/slide0001.htm ./s3-2_files/slide0001_image001.gif ./s3-2_files/slide0004.htm ./s3-2_files/slide0005.htm ./s3-2_files/slide0006.htm ./s3-2_files/slide0007.htm ./s3-2_files/slide0008.htm ./s3-2_files/slide0009.htm ./s3-2_files/slide0010.htm ./s3-2_files/slide0011.htm ./s3-2_files/slide0012.htm ./s3-2_files/slide0012_image003.gif ./s3-2_files/slide0015.htm ./s3-2_files/slide0015_image004.gif ./s3-2_files/slide0015_image005.gif ./s3-2_files/slide0015_image006.gif ./s3-2_files/slide0015_image007.gif ./s3-2_files/slide0015_image008.gif ./s3-2_files/slide0016.htm ./s3-2_files/slide0016.xml ./s3-2_files/slide0016_image009.gif ./s3-2_files/slide0016_image010.gif ./s3-2_files/slide0016_image011.gif ./s3-2_files/slide0016_image012.gif ./s3-2_files/slide0016_image013.gif ./s3-2_files/slide0016_image014.gif ./s3-2_files/slide0016_image015.gif ./s3-2_files/slide0016_image016.gif ./s3-2_files/slide0016_image017.gif ./s3-2_files/slide0016_image018.gif ./s3-2_files/slide0016_image019.gif ./s3-2_files/slide0016_image020.gif ./s3-2_files/slide0017.htm ./s3-2_files/slide0017.xml ./s3-2_files/slide0017_image021.gif ./s3-2_files/slide0017_image022.gif ./s3-2_files/slide0017_image023.gif ./s3-2_files/slide0017_image024.gif ./s3-2_files/slide0017_image025.gif ./s3-2_files/slide0017_image026.gif ./s3-2_files/slide0017_image027.gif ./s3-2_files/slide0017_image028.gif ./s3-2_files/slide0017_image029.gif ./s3-2_files/slide0017_image030.gif ./s3-2_files/slide0017_image031.gif ./s3-2_files/slide0018.htm ./s3-2_files/slide0018.xml ./s3-2_files/slide0018_image032.gif ./s3-2_files/slide0019.htm ./s3-2_files/slide0020.htm ./s3-2_files/slide0020_image033.gif ./s3-2_files/slide0021.htm ./s3-2_files/slide0021_image034.gif ./s3-2_files/slide0022.htm ./s3-2_files/slide0022_image035.gif ./s3-2_files/slide0023.htm ./s3-2_files/slide0023_image036.gif ./s3-2_files/slide0024.htm ./s3-2_files/slide0024_image037.gif ./s3-2_files/slide0026.htm ./s3-2_files/slide0026_image038.gif ./s3-2_files/slide0027.htm ./s3-2_files/slide0028.htm ./s3-2_files/slide0028_image039.gif ./s3-2_files/slide0029.htm ./s3-2_files/slide0029.xml ./s3-2_files/slide0029_image040.gif ./s3-2_files/slide0030.htm ./s3-2_files/slide0030.xml ./s3-2_files/slide0030_image041.gif ./s3-2_files/slide0031.htm ./s3-2_files/slide0031_image042.gif ./s3-2_files/slide0032.htm ./s3-2_files/slide0032_image043.gif ./s3-2_files/slide0033.htm ./s3-2_files/slide0034.htm ./s3-2_files/slide0034_image044.gif ./s3-2_files/slide0035.htm ./s3-2_files/slide0035_image045.gif ./s3-2_files/slide0036.htm ./s3-2_files/slide0036_image046.gif ./s3-2_files/slide0037.htm ./s3-2_files/slide0037_image047.gif ./s3-2_files/slide0038.htm ./s3-2_files/slide0038_image048.gif ./s3-2_files/slide0039.htm ./s3-2_files/slide0040.htm ./s3-2_files/slide0041.htm ./s3-4.pdf ./s3-4.ppt ./s3-5.ppt ./s3-6.ppt ./s3_codewalk.html ./s3_description.html ./s3_fe_spec.pdf ./s3_overview.html ./sphinx3.3-6.ppt ./sphinx3.4.code.tracing ./sphinx3.5_refactoring.note ./sphinxman_FAQ.html ./sphinxman_manual.html ./sphinxman_misc.html'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
epdata='./chan3-dither.cepview ./chan3-logspec.cepview ./chan3.cepview ./chan3.logspec ./chan3.mfc ./chan3.raw ./ep.mdef ./ep.result ./means ./mixture_weights ./variances'
exec_prefix='NONE'
hmmdata='./8gau.6000sen.quant ./feat.params ./mdef ./means ./mixture_weights ./mllr_matrices ./test-align-mllr.out ./test-conf.confhypseg ./test.align.mllr.out ./test.align.out ./test.align.phseg ./test.align.wdseg ./test.allphone.allp ./test.allphone.match ./test.allphone.matchseg ./test.allphone.mllr.allp ./test.allphone.mllr.match ./test.allphone.mllr.matchseg ./test.allphone.phone_tg.allp ./test.allphone.phone_tg.match ./test.allphone.phone_tg.matchseg ./test.allphone.phone_tg.mllr.allp ./test.allphone.phone_tg.mllr.match ./test.allphone.phone_tg.mllr.matchseg ./test.dp.hyp ./test.dp.ref ./test.dp.simple.log ./test.mode1369.dump ./test.subvq ./transition_matrices ./variances'
host='x86_64-apple-darwin15.3.0'
host_alias=''
host_cpu='x86_64'
host_os='darwin15.3.0'
host_vendor='apple'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /Users/Bassem/downloads/cmusphinx/sphinx3/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
lmdata='./README ./align.correct ./an4.cls.probdef ./an4.ctl ./an4.ctl.platform_independent ./an4.ctl_lm ./an4.dict ./an4.phone.dict ./an4.phonelist ./an4.tg.phone.arpa ./an4.tg.phone.arpa.DMP ./an4.tg.phone.arpa.FST ./an4.tg.phone.arpa.FST.SYM ./an4.tg.phone.arpa.lm_convert ./an4.ug.cls.lm ./an4.ug.cls.lm.DMP ./an4.ug.cls.lmctl ./an4.ug.fsg ./an4.ug.lm ./an4.ug.lm.DMP ./an4.ug.lm.FST ./an4.ug.lm.FST.SYM ./an4.ug.lm.lm_convert ./args.an4 ./args.an4.test ./args.an4.test.cls ./args.an4.test.fsg ./args.an4.test.mllr ./args.an4.test.win32 ./filler.dict ./pittsburgh.bigendian.mfc ./pittsburgh.bigendian.raw ./pittsburgh.lat.gz ./pittsburgh.littleendian.abcd ./pittsburgh.littleendian.mfc ./pittsburgh.littleendian.raw ./pittsburgh.littleendian.slf ./pittsburgh.nbest'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sphinxbase='/Users/Bassem/downloads/cmusphinx/sphinx3/../sphinxbase'
sysconfdir='${prefix}/etc'
target_alias=''
tidigitsdata='./cepstra/man/man.ah.111a.mfc ./cepstra/man/man.ah.1b.mfc ./cepstra/man/man.ah.2934za.mfc ./cepstra/man/man.ah.35oa.mfc ./cepstra/man/man.ah.3oa.mfc ./cepstra/man/man.ah.4625a.mfc ./cepstra/man/man.ah.588zza.mfc ./cepstra/man/man.ah.63a.mfc ./cepstra/man/man.ah.6o838a.mfc ./cepstra/man/man.ah.75913a.mfc ./cepstra/man/man.ah.844o1a.mfc ./cepstra/man/man.ah.8b.mfc ./cepstra/man/man.ah.9b.mfc ./cepstra/man/man.ah.o789a.mfc ./cepstra/man/man.ah.z4548a.mfc ./cepstra/man/man.ah.zb.mfc ./cepstra/woman/woman.ak.1b.mfc ./cepstra/woman/woman.ak.276317oa.mfc ./cepstra/woman/woman.ak.334a.mfc ./cepstra/woman/woman.ak.3z3z9a.mfc ./cepstra/woman/woman.ak.48z66zza.mfc ./cepstra/woman/woman.ak.532a.mfc ./cepstra/woman/woman.ak.5z874a.mfc ./cepstra/woman/woman.ak.6728za.mfc ./cepstra/woman/woman.ak.75a.mfc ./cepstra/woman/woman.ak.84983a.mfc ./cepstra/woman/woman.ak.8a.mfc ./cepstra/woman/woman.ak.99731a.mfc ./cepstra/woman/woman.ak.o69a.mfc ./cepstra/woman/woman.ak.ooa.mfc ./cepstra/woman/woman.ak.za.mfc ./dictionary ./fillerdict ./test.2.digits.fsg ./test.digits.fsg ./test.iso.digits.fsg ./tidigits.length.1.regression ./tidigits.length.1.result ./tidigits.length.2.regression ./tidigits.length.2.result ./tidigits.length.arb.regression ./tidigits.length.arb.result ./wd_dependent_phone.cd_continuous_8gau/mdef ./wd_dependent_phone.cd_continuous_8gau/means ./wd_dependent_phone.cd_continuous_8gau/mixture_weights ./wd_dependent_phone.cd_continuous_8gau/transition_matrices ./wd_dependent_phone.cd_continuous_8gau/variances'
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "sphinx3"
#define PACKAGE_TARNAME "sphinx3"
#define PACKAGE_VERSION "0.7"
#define PACKAGE_STRING "sphinx3 0.7"
#define PACKAGE_BUGREPORT ""
#define PACKAGE_URL ""
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define STDC_HEADERS 1
#define HAVE_MEMMOVE 1
#define HAVE_BCOPY 1
#define RETSIGTYPE void
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_ATTRIBUTE_VISIBILITY 1
configure: exit 1

Jedi-VIM: Popup appears just in some cases

I installed several plugins to create a kind of python-IDE with vim 7.3 on Mac (Yosemite).
See my .vimrc for a list of plugins - settings:
set nocompatible " be iMproved, required
filetype off " required
" set the runtime path to include Vundle and initialize
set rtp+=~/.vim/bundle/Vundle.vim
filetype plugin indent on
call vundle#begin()
" alternatively, pass a path where Vundle should install plugins
"call vundle#begin('~/some/path/here')
" let Vundle manage Vundle, required
Plugin 'gmarik/Vundle.vim'
Plugin 'klen/python-mode'
Bundle 'altercation/vim-colors-solarized'
Bundle 'scrooloose/nerdtree'
Bundle 'Lokaltog/powerline', {'rtp': 'powerline/bindings/vim/'}
Bundle 'davidhalter/jedi-vim'
" All of your Plugins must be added before the following line
call vundle#end() " required
syntax enable
set background=dark
let g:solarized_termcolors=256
let g:solarized_visibility = "high"
let g:solarized_contrast = "high"
colorscheme solarized
" Python-mode
" Activate rope
" Keys:
" K Show python docs
" <Ctrl-Space> Rope autocomplete
" <Ctrl-c>g Rope goto definition
" <Ctrl-c>d Rope show documentation
" <Ctrl-c>f Rope find occurrences
" <Leader>b Set, unset breakpoint (g:pymode_breakpoint enabled)
" [[ Jump on previous class or function (normal, visual, operator modes)
" ]] Jump on next class or function (normal, visual, operator modes)
" [M Jump on previous class or method (normal, visual, operator modes)
" ]M Jump on next class or method (normal, visual, operator modes)
let g:pymode_rope = 0
" Documentation
let g:pymode_doc = 1
let g:pymode_doc_key = 'K'
"Linting
let g:pymode_lint = 1
let g:pymode_lint_checker = 'pyflakes,pep8'
" Auto check on save
let g:pymode_lint_on_write = 1
" Support virtualenv
let g:pymode_virtualenv = 1
" Enable breakpoints plugin
let g:pymode_breakpoint = 1
let g:pymode_breakpoint_bind = '<leader>b'
" syntax highlighting
let g:pymode_syntax = 1
let g:pymode_syntax_all = 1
let g:pymode_syntax_indent_errors = g:pymode_syntax_all
let g:pymode_syntax_space_errors = g:pymode_syntax_all
let g:pymode_options_max_line_length = 79
let g:pymode_options_colorcolumn = 1
let g:pymode_python = 'python'
let g:pymode_indent = 1
" Don't autofold code
let g:pymode_folding = 0
" NerdTree
map <F2> :NERDTreeToggle<CR>
" Powerline setup
set guifont=DejaVu\ Sans\ Mono\ for\ Powerline\ 9
set laststatus=2
This is the vim-version-information
VIM - Vi IMproved 7.3 (2010 Aug 15, compiled Nov 6 2014 14:32:04)
Compiled by root#apple.com
Normal version without GUI. Features included (+) or not (-):
-arabic +autocmd -balloon_eval -browse +builtin_terms +byte_offset +cindent
-clientserver -clipboard +cmdline_compl +cmdline_hist +cmdline_info +comments
-conceal +cryptv +cscope +cursorbind +cursorshape +dialog_con +diff +digraphs
-dnd -ebcdic -emacs_tags +eval +ex_extra +extra_search -farsi +file_in_path
+find_in_path +float +folding -footer +fork() -gettext -hangul_input +iconv
+insert_expand +jumplist -keymap -langmap +libcall +linebreak +lispindent
+listcmds +localmap -lua +menu +mksession +modify_fname +mouse -mouseshape
-mouse_dec -mouse_gpm -mouse_jsbterm -mouse_netterm -mouse_sysmouse
+mouse_xterm +multi_byte +multi_lang -mzscheme +netbeans_intg -osfiletype
+path_extra -perl +persistent_undo +postscript +printer -profile +python/dyn
-python3 +quickfix +reltime -rightleft +ruby/dyn +scrollbind +signs
+smartindent -sniff +startuptime +statusline -sun_workshop +syntax +tag_binary
+tag_old_static -tag_any_white -tcl +terminfo +termresponse +textobjects +title
-toolbar +user_commands +vertsplit +virtualedit +visual +visualextra +viminfo
+vreplace +wildignore +wildmenu +windows +writebackup -X11 -xfontset -xim -xsmp
-xterm_clipboard -xterm_save
system vimrc file: "$VIM/vimrc"
user vimrc file: "$HOME/.vimrc"
user exrc file: "$HOME/.exrc"
fall-back for $VIM: "/usr/share/vim"
Compilation: gcc -c -I. -D_FORTIFY_SOURCE=0 -Iproto -DHAVE_CONFIG_H -arch i386 -arch x86_64 -g -Os -pipe
Linking: gcc -arch i386 -arch x86_64 -o vim -lncurses
If I work in a python-file, I expected a "popup-window" for autocompletion every time I press Ctrl-Space or period - but this is not the case
Example
No Popup:
Here is a popup
Any Ideas?

Cython producing duplicate symbols _PyInit_ and ___pyx_module_is_main_

When trying to port a Python code to cython, I get the following linker error message:
cls ~/workspace/Prototypes/PLPcython $ python3 setup.py build_ext --inplace
running build_ext
cythoning src/graph.pyx to src/graph.c
cythoning src/community.pyx to src/community.c
building 'PLPcython' extension
creating build
creating build/temp.macosx-10.8-x86_64-3.3
creating build/temp.macosx-10.8-x86_64-3.3/src
cc -Wno-unused-result -fno-common -dynamic -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -I/usr/local/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python3/3.3.0/Frameworks/Python.framework/Versions/3.3/include/python3.3m -c src/graph.c -o build/temp.macosx-10.8-x86_64-3.3/src/graph.o
cc -Wno-unused-result -fno-common -dynamic -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -I/usr/local/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python3/3.3.0/Frameworks/Python.framework/Versions/3.3/include/python3.3m -c src/community.c -o build/temp.macosx-10.8-x86_64-3.3/src/community.o
src/community.c:1414:19: warning: expression result unused [-Wunused-value]
PyObject_INIT(o, t);
~~~~~~~~~~~~~~^~~~~
/usr/local/Cellar/python3/3.3.0/Frameworks/Python.framework/Versions/3.3/include/python3.3m/objimpl.h:163:69: note: expanded from macro 'PyObject_INIT'
( Py_TYPE(op) = (typeobj), _Py_NewReference((PyObject *)(op)), (op) )
^
1 warning generated.
cc -bundle -undefined dynamic_lookup -L/usr/local/lib -L/usr/local/opt/sqlite/lib build/temp.macosx-10.8-x86_64-3.3/src/graph.o build/temp.macosx-10.8-x86_64-3.3/src/community.o -o /Users/cls/workspace/Prototypes/PLPcython/PLPcython.so
duplicate symbol _PyInit_PLPcython in:
build/temp.macosx-10.8-x86_64-3.3/src/graph.o
build/temp.macosx-10.8-x86_64-3.3/src/community.o
duplicate symbol ___pyx_module_is_main_PLPcython in:
build/temp.macosx-10.8-x86_64-3.3/src/graph.o
build/temp.macosx-10.8-x86_64-3.3/src/community.o
ld: 2 duplicate symbols for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'cc' failed with exit status 1
Apparently duplicate symbols are produced. What is _PyInit_* and ___pyx_module_is_main_?
These are the two source files I try to cythonize: graph.pyx
class Graph:
def __init__(self, n=0):
self.n = n
self.m = 0
self.z = n # max node id
self.adja = [[] for i in range(self.z)]
self.deg = [0 for i in range(self.z)]
def maxNodeId(self):
return self.z
def numberOfNodes(self):
return self.n
def numberOfEdges(self):
return self.m
def addEdge(self, u, v):
if (u == v):
self.adja[u].append(v)
self.deg[u] += 1
else:
self.adja[u].append(v)
self.adja[v].append(u)
self.deg[u] += 1
self.deg[v] += 1
self.m += 1
def hasEdge(self, u, v):
for w in self.adja[u]:
if w == v:
return True
return False
def degree(self, u):
return self.deg[u]
def forNodes(self, handle):
# assumtion: all nodes exist
for u in range(self.z):
handle(u)
def forEdges(self, handle):
for u in range(self.z):
for v in self.adja[u]:
if v <= u:
handle(u, v)
def forNeighborsOf(self, u, handle):
for v in self.adja[u]:
handle(v)
and community.pyx
def numberOfCommunities(zeta, G):
labels = set()
for label in zeta:
if label is not None:
labels.add(label)
return len(labels)
def coverage(zeta, G):
intra = 0
inter = 0
m = G.numberOfEdges()
def scan(u, v):
nonlocal intra
nonlocal inter
if zeta[u] == zeta[v]:
intra += 1
else:
inter += 1
G.forEdges(scan)
print("intra-community edges: ", intra)
print("inter-community edges: ",inter)
assert (inter + intra == m)
coverage = intra / m
return coverage

I believe Cython only supports the compilation of a single source file to a single module. So either you compile your two files as two separate modules or you use the include statement (http://docs.cython.org/src/userguide/language_basics.html#the-include-statement) to combine them in a single source file.

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