python subprocess multiple commands with win path [duplicate] - python

This question already has answers here:
How do you activate an Anaconda environment within a Python Script?
(5 answers)
Closed 2 years ago.
I'm trying to trigger the execution of a python script via conda.
I would then capture the output and report it to command prompt where this is executed.
This is basically the concept in the easiest way
wrap.py - wrapper inted to execute multiple times the following script
import subprocess
def wrap():
while True:
cmd1=r"call C:\\Users\\my_user\\anaconda3\\Scripts\\activate.bat"
cmd2=r"cd C:\\myfolder\\mysubfolder"
cmd3=r"C:\\Users\\my_user\\anaconda3\\python.exe C:\\myfolder\\mysubfolder\\test.py"
proc = subprocess.run([cmd1,cmd2,cmd3])
if __name__ == '__main__':
wrap()
test.py - script that has to be executed
def mytest():
print("success")
if __name__ == '__main__':
mytest()
since mytest prints success once, I would like the output of the wrapper (run on anaconda) to be
(base) C:\myfolder\mysubfolder> python wrap.py
success
success
success
...
I tried with
1 - subprocess.Popen
2 - using shell=True or not
3 - using a list ["first command","second command","third command"] or a single string "first;second;third"
4 - using or removing "r" in front of the string, here the blanks are breaking the game
5 - using single or double ""
6- in my_user the underscore is also resulting in an encoding error
I actually tried to replicate at least 20 different stackoverflow "solutions" but none of them really worked for me. I also read properly the subprocessing page of python documentation, but this didn't help.
Any hint is appreciated, I'm lost.

The syntax subprocess.run([cmd1, cmd2, cmd3]) means run cmd1 with cmd2 and cmd3 as command-line arguments to cmd1. You instead want to execute a single sequence of shell commands; several of the things you are trying to do here require the shell, so you do want shell=True, which dictates the use of a single string as input, rather than a list consisting of a command and its arguments.
(Windows has some finicky processing behind the scenes which makes it not completely impossible to use a list of strings as the first argument with shell=True; but this really isn't portable or obvious. Just don't.)
Regarding the requirement for shell=True here, commands like call and cd (and source or . in Bourne-family shells) are shell built-ins which do not exist as separate binaries; if you don't have shell=True you will simply get "command not found" or your local equivalent. (Under other circumstances, you should generally avoid shell=True when you can. But this is not one of those cases; here, it really is unavoidable without major code changes.)
If your shell is cmd I guess the command might look like
subprocess.run(
r"call C:\Users\my_user\anaconda3\Scripts\activate.bat & C:\Users\my_user\anaconda3\python.exe C:\myfolder\mysubfolder\test.py",
shell=True)
or equivalently the same without r before the string and with all backslashes doubled; the only difference between an r"..." string and a regular "..." string is how the former allows you to put in literal backslashes, whereas the latter requires you to escape them; in the former case, everything in the string is literal, whereas in the latter case, you can use symbolic notations like \n for a newline character, \t for tab, etc.
In Python, it doesn't really matter whether you use single or double quotes; you can switch between them freely, obviously as long as you use the same opening and closing quotes. If you need literal single quotes in the string, use double quotes so you don't have to backslash-escape the literal quote, and vice versa. There's also the triple-quoted string which accepts either quoting character, but is allowed to span multiple lines, i.e. contain literal newlines without quoting them.
If your preferred shell is sh or bash, the same syntax would look like
subprocess.run(r"""
source C:\Users\my_user\anaconda3\Scripts\activate.bat &&
C:\Users\my_user\anaconda3\python.exe C:\myfolder\mysubfolder\test.py""",
shell=True)
I left out the cd in both cases because nothing in your code seems to require the subprocess to run in a particular directory. If you do actually have that requirement, you can add cwd=r'C:\myfolder\mysubfolder' after shell=True to run the entire subprocess in a separate directory.
There are situations where the facilities of subprocess.run() are insufficient, and you need to drop down to bare subprocess.Popen() and do the surrounding plumbing yourself; but this emphatically is not one of those scenarios. You should stay far away from Popen() if you can, especially if your understanding of subprocesses is not very sophisticated.

Related

In Python, with subprocess.Popen, is it possible to pass literal quotes to the command to be run, when Popen's command line parameter is in list form?

In Python, with subprocess.Popen, is it possible to pass literal quotes as an argument, when the command and its parameters are in list form?
I'll explain further what I mean. Some commands can have literal quotes in their arguments e.g. I'm trying "C:\Program Files (x86)\Google\Chrome\Application\chrome.exe" --profile-directory="Profile 1" Some might even require them.
Note that one answer points out that technically it is possible to get Chrome from the command line to launch whatever profile, without passing a literal quote C:\Users\User>"C:\Program Files....\chrome.exe" "--profile-directory=Profile 2"
Nevertheless, i'm asking about passing literal quotes so "C:\Program Files (x86)\Google\Chrome\Application\chrome.exe" --profile-directory="Profile 1"
For simplicity's sake i'll use calc.exe since it's in the path.
import time
import subprocess
proc=subprocess.Popen("calc.exe"+" "+'--profile-directory="Profile 3"')
proc2=subprocess.Popen(["calc.exe",'--profile-directory="Profile 4"'])
time.sleep(3)
proc.wait()
proc2.wait()
Now look at the difference in the command line as visible in task manager or via wmic.
C:\Users\User>wmic process where caption="calc.exe" get commandline | findstr calc
c:\windows\system32\calc.exe --profile-directory="Profile 3"
c:\windows\system32\calc.exe "--profile-directory=\"Profile 4\""
C:\Users\User>
You can see this from the python interpreter
>>> subprocess.Popen(["c:/windows/system32/calc.exe","abc"+'"'+"def"])
...
>>>
>>> subprocess.run("C:\Windows\System32\wbem\WMIC.exe process where caption=\"calc.exe\" get commandline")
...
c:/windows/system32/calc.exe abc\"def
....
>>>
You see it's sticking a backslash in there.
Some comments regarding some suggestions given.
One suggestion assumes that --profile-directory="Profile 1" is the same as --profile-directory "Profile 1" i.e. the assumption that you can replace the = with a space and chrome will work the same. But that isn't the case. So writing subprocess.Popen(["C:\...\chrome.exe", "--profile-directory", "Profile 3"]) will indeed produce "C:\....\chrome.exe" --profile-directory "Profile 1" but that won't work.. it leads chrome to either not open at all, or to open a browser window that offers profiles to click on. The equals sign is necessary.
Another suggestion does
subprocess.Popen(
" ".join(
[
"C:\\Program Files\\Google\\Chrome\\Application\\chrome.exe",
'--profile-directory="Person 1"',
]
)
That's not passing a list to Popen, that's passing a list to join, and join is converting it to a string.
Another suggestion is
subprocess.Popen('C:\\Program Files (x86)\\Google\\Chrome\\Application\\chrome.exe --profile-directory="Profile 3"')
That's using a string. But as you see from my question, I managed it using a string. I'm asking about using a list.
Another suggestion suggested "--profile-directory='Profile 1'"
If I run chrome with --profile-directory="Profile 1" I get a particular profile that I use sometimes. But if running chrome with "--profile-directory='Profile 1'" Then it doesn't load up that profile. It loads up a blank profile. And going to chrome://version shows "'profile 1'" rather than "profile 1" It's like a different profile, like you may as well have said chrome.exe --profile-directory="profile A". And it also creates directories starting with ' like C:\Users\User\AppData\Local\Google\Chrome\User Data\'Profile 1234' that should be removed.
Another suggestion suggested
subprocess.Popen(
[
"C:\\Program Files (x86)\\Google\\Chrome\\Application\\chrome.exe",
"--profile-directory=Profile 1",
]
That is interesting because it does "C:\...chrome.exe" "--profile-directory=Profile 1"
And it does infact load chrome with the specified profile. Though it doesn't try to pass literal quotes!
My question asks about when passing literal quotes. It's as if maybe it assumes it's a linux shell and inserts a backslash before it, which in a linux would ensure the quote makes it past the shell and to the program being run. Though i'm not sure it'd even go to the linux shell on linux. e.g. on Windows if I stick a cmd escape character in there like ^ so "--pro^file-directory=Profile 1" then the ^ just gets passed literally. So the cmd shell doesn't intervene.
Why is it that on Windows, subprocess.Popen calls list2cmdline when passed a list, which(and here's the big 'why'), then adds a backslash to any literal double quote within a string, meaning that when using the 'method' of passing a list to to Popen rather than passing a string to it, there is this problem, that you can't pass a literal double quote! So, why does it add that backslash!
I did here a suggestion that looking at argsv in windows vs linux might show a difference. I'm not sure that they would since both implement C.
I don't see why POpen in any situation should behave like Windows needs a backslash inserted more than Linux does.
$ cat ./testargs.py
#!/usr/bin/env python3
import sys
print(sys.argv)
C:\blah>type .\testargsw.py
import sys
print(sys.argv)
in both cases
C:\blah>.\testargsw.py abc\^"def
['C:\\Users\\User\\testargsw.py', 'abc"def']
>.\testargsw.py abc\"def
['C:\\Users\\User\\testargsw.py', 'abc"def']
C:\blah>
$ ./testargs.py abc\"def
['./testargs.py', 'abc"def']
Maybe Windows , specifically the MS C Runtime.. The Code responsible for sending a program's arguments received from the shell, to the main method into argv, is requiring an extra backslash, in a sense because after escaping the double quote, a backslash is then required. (And [here] is put in by the user).
That said, I have heard though that looking at what a shell does on Linux is basically misleading, because a major part of the purpose of the subprocess module is to ensure that you can avoid using a shell entirely.
The script example is perhaps not that relevant(it was just something somebody suggested I check), but my issue is that POpen when passed a list is adding in a backslash as shown by WMIC output(also visible in task manager in the command line column).
added
I spoke to a person that has used python for a long time. They said subprocess was added somewhere in 2.x They still use os.popen(). That takes a string not a list. There have been moves to shift people from os.popen to subprocess.Popen https://docs.python.org/3/library/subprocess.html#replacing-os-popen-os-popen2-os-popen3
An issue with subprocess.Popen in Windows, is it has this list feature, that I think behaves funny.
The easy workaround to that is to not use the list feature of it. To not pass it a list. It's a new feature and not necessary. You can pass it a string.
The question includes an example from the python interpreter and shows how (on windows at least), python adds a backslash to the literal quote.
The person I spoke to pointed out to me two documents that relate to that.
A string is a sequence. A sequence could be a string or list or tuple, though in this document they use the term sequence to just mean list or tuple, and they don't mean string when they say sequence.
https://peps.python.org/pep-0324/
"class Popen(args........."
"args should be a string, or a sequence of program arguments"
It mentions about on unix, shell=True and shell=False
And then it says
"On Windows: the Popen class uses CreateProcess() to execute the child program, which operates on strings. If args is a sequence, it will be converted to a string using the list2cmdline method. Please note that not all MS Windows applications interpret the command line the same way: The list2cmdline is designed for applications using the same rules as the MS C runtime."
Technically a string is a sequence, but that document uses the term sequence in a funny way. But what it means is it's that on Windows, if args is not given a string, but is given a list or tuple, then it uses the list2cmdline method.
Be sure to use print otherwise it uses repr() of the string
>>> print(subprocess.list2cmdline(['a', '"b c"']))
a "\"b c\""
>>>
so that's the function that it's using behind the scenes, on windows, that is inserting a backslash in there.
The guy I spoke to pointed me to this document too
https://bugs.python.org/issue11827
a technical user comments, "list2cmdline() in subprocess is publicly accessible (doesn't begin with underscores) but it isn't documented."
And the point is made there that, let's say they made list2cmdline() private, the fact is that what Popen is doing to the list, in Windows, to get the command line, is undocumented.
So the question then becomes, what is the design trying to do, what is the justification for the insertion of backslash. If a programmer wanted to insert a backslash they could do so. It seeems to me to make more sense then to avoid passing a list to subprocess.POpen.
Windows cmd doesn't even use backslash as an escape character!!!! It uses caret.
C:\Users\User>echo \\
\\
C:\Users\User>echo ^\
\
C:\Users\User>
it's linux eg bash, that uses backslash as an escape character
$ echo \\
\
$
Some executables in windows might want a quote escaped and with a backslash, but then the technical user can do that just as a technical linux user does.
So given that they haven't even documented the "feature" (or bug), how they would justify it, I don't know, but they could start by documenting it!
So I don't understand why passing a list to subprocess.ppopen is adding a backslash?
I could take the list join it with space and pass it as a string to popen, so it won't add a backslash, but as mentioned, that'd be avoiding the question.
In Python, with subprocess.Popen, is it possible to pass literal
quotes as an argument, when the command and its parameters are in list
form?
I think yes, but to elements of argsv, not to the command line..
I'll explain further what I mean. Some commands can have literal
quotes in their arguments e.g. I'm trying "C:\Program Files (x86)\Google\Chrome\Application\chrome.exe" --profile-directory="Profile 1" Some might even require them.
Note that one answer points out that technically it is possible to get
Chrome from the command line to launch whatever profile, without
passing a literal quote C:\Users\User>"C:\Program Files....\chrome.exe" "--profile-directory=Profile 2"
Nevertheless, i'm asking about passing literal quotes so
"C:\Program Files (x86)\Google\Chrome\Application\chrome.exe" --profile-directory="Profile 1"
I think there was some confusion, that I might have resolved now.
When running a binary executable in windows(so, an exe, not a bat file) and giving it arguments
People often speak of how linux and windows behave differently..
Windows doesn't separate arguments out, it just dumps stuff to the command line. And there's no concept of space separating out arguments.
Apparently in linux, the command line is parsed by the shell and split into arguments and the arguments are passed by the shell to a POSIX function called execv, which then get passed to main's argsv.
Whereas in windows, there's an aspect of C pertaining to Windows called the MS C Runtime, that parses the command line and splits it into arguments.
So when looking in task manager or from WMIC, at the command line, it's just a dump when it comes to quotes. The quotes aren't some special some literal. But when the MS C Runtime looks at it then the quotes will have that meaning of some special some literal, a special one will not go to argsv, and a literal one will. Usually they are all special, none are literal.
>calc """"""""""^G
>wmic process where caption="calc.exe" get commandline | findstr calc
calc """"""""""G
One we see what's in the command line then one can consider what the arguments are.. what would would go to argsv.
In the case of the two Chrome examples, there's actually no literal quote, in the sense of a literal quote that'd go to argsv. in either example
Example 1
"C:\Program Files(x86)\Google\Chrome\Application\chrome.exe" --profile-directory="Profile 1"
Example 2
"C:\Program Files....\chrome.exe" "--profile-directory=Profile 2"
Looking at "Example 1"
It's not that there's an argument --profile-directory="Profile 1" that has two literal quotes.
The quotes when read by MS CRT(MS C runtime), will just preserve space keeping that "1" as part of the same argument.
So a program that displays argv will show
C:\blah>type w.c
#include <stdio.h>
int main(int argc, char *argv[]) {
int i = 0;
while (argv[i]) {
printf("argv[%d] = %s\n", i, argv[i]);
i++;
}
return 0;
}
C:\blah>w.exe --profile-directory="Profile 1"
argv[0] = w.exe
argv[1] = --profile-directory=Profile 1
C:\blah>
See, no literal quotes there
Infact both different command lines, will produce the same thing going to argv
>w.exe "--profile-directory=Profile 1"
argv[0] = w.exe
argv[1] = --profile-directory=Profile 1
>w.exe --profile-directory="Profile 1"
argv[0] = w.exe
argv[1] = --profile-directory=Profile 1
>
So, how would you even get a literal quote there, well, this link mentions it https://learn.microsoft.com/en-us/cpp/c-language/parsing-c-command-line-arguments?view=msvc-170
the find command might have funny parsing, but if you are using find or a windows implementation of grep.. and wanted to look for a quote.. Then, you'd want one of the argsv parameters to contain a quote.
And that's when you'd put a backslash in there
>w.exe \"
argv[0] = w.exe
argv[1] = "
>
The command line would have a backslash.. So that the argv would have a literal quote.
And that's what passing a list to subprocess.Popen is all about..
You are putting in what you want to be in the argv.
It is then producing the command line that would result in those things being in the argv.
That's why it's inserting a backslash before the double quotes!
So..
When I trying to use list, I was under the mistaken impression that I needed to get literal quotes into the arguments. And I thought I was forming the command line. Both of those premises were wrong.
I suppose if a python script has two options.. one to run an executable for linux users, and one to run an executable for windows users. The command line might be different, because on the one hand, the windows command line (either what's typed or it, what windows dumps as it), and on the other hand, what's typed on the linux command line.
And with using a list where each element is an element of argsv, it lets the library do the work, in the case of windows, using the list2cmd function, to produce whatever the command line would be in order for the MS C Runtime to produce the result you want in argsv.
side note
In the testargs.py file used in the question, it'd not give expected output https://learn.microsoft.com/en-us/cpp/c-language/parsing-c-command-line-arguments?view=msvc-170 for some strings e.g. `"ab\"c" "\\" d` because it is giving the repl representation Adjust it as follows.
user#comp:~# cat ./testargs.py
#!/usr/bin/env python3
import sys
print(sys.argv)
user#comp:~# cat ./testargs_corrected.py
#!/usr/bin/env python3
import sys
# print(sys.argv) would behaves unintended for "ab\"c" "\\" d
# (it's escaping strings for output in an repr)
# so not using print(sys.argv), using below line instead.
# '//' that it shows, means / 'cos '//' is a single character in python
# but much clearer to show it not in the repl form.
for n, a in enumerate(sys.argv): print(f"argv[{n}] = {a}")
user#comp:~# ./testargs.py "ab\"c" "\\" d
['./testargs.py', 'ab"c', '\\', 'd']
user#comp:~#
user#comp:~# ./testargs_corrected.py "ab\"c" "\\" d
argv[0] = ./testargs_corrected.py
argv[1] = ab"c
argv[2] = \
argv[3] = d
user#comp:~#
Should do the trick (might wanna pass shell=True to Popen if it doesn't):
subprocess.Popen(["C:\Program Files (x86)\Google\Chrome\Application\chrome.exe", "--profile-directory", "Profile 3"]);
This is possible because --some-flag="some value" is the same as --some-flag "some value"
ChRomE solution (working, omg):
import subprocess
subprocess.Popen(
[
"C:\\Program Files (x86)\\Google\\Chrome\\Application\\chrome.exe",
"--profile-directory=Profile 1",
]
)

Bash script to read file line by line with some words quoted and containing spaces [duplicate]

This question already has an answer here:
Honoring quotes while reading shell arguments from a file
(1 answer)
Closed 1 year ago.
I am trying to create a shell script that reads a file with parameters for a python script the shell script is supposed to execute in a loop:
#!/bin/bash
while read -r i ; do python catfisher.py $i ; done < fishes
where 'fishes' might contain:
vesper "purplish green" fender
vespa "dimmer grey" "stradivarius veil"
The problem is that the python script's argparser interprets the parameters like so:
python purplish green fender
even when echoing $1 in the bash script outputs:
vesper "purplish green" fender
The python script is fine if run manually:
python catfisher.py "purplish green" fender
so I'm assuming it's my lacking bash script skills that are the culprit, rather than my lacking argparser skills but pray advice if I'm mistaken.
Well, the problem is that to do this 100% correctly, you'd have to define a data format for your fishes file and create a parser for it.
You could approximate your desired results by saying "ok, I'd like anything in fishes to be interpreted like a shell would interpret commands to an argument", but that also entails other metacharacters than spaces and quotes which you already have, such as dollar signs, braces, tildes, parentheses, etc.
Since you are using variable expansion to feed your line to Python, your shell is already past the quoting phase, thus not interpreting quotes contained in the variable.
Unfortunately, there are no mechanisms to selectively carry out shell parsing phases, like you want to do, ignoring dangerous parts.
You can pass the text to a new shell, but that allows your data to contain commands, making your software vulnerable to code injection:
while read -r i ; do bash -c "python catfisher.py $i" ; done < fishes
The best solution would probably be close to the first suggestion, except rather than defining your own data format, you could use an existing one, such as CSV, some dialects of which already allow for quoting, and are widely supported by libraries, like the csv module, built into Python's standard library.

Passing newline within string into a python script from the command line

I have a script that I run from the command line which I would like to be able to pass string arguments into. As in
script.py --string "thing1\nthing2"
such that the program would interpret the '\n' as a new line. If string="thing1\nthing2" I want to get
print string
to return:
thing1
thing2
rather than thing1\nthing2
If I simply hard-code the string "thing1\nthing2" into the script, it does this, but if it's entered as a command line argument via getopt, it doesn't recognize it. I have tried a number of approaches to this: reading in the cl string as r"%s" % arg, various ways of specifying it on the commandline, etc, and nothing seems to work. Ideas? Is this completely impossible?
From https://stackoverflow.com/a/4918413/478656 in Bash, you can use:
script.py --string $'thing1\nthing2'
e.g.
$ python test.py $'1\n2'
1
2
But that's Bash-specific syntax.
This is really a shell question since the shell does all the command parsing. Python doesn't care what's happening with that and only gets what comes through in the exec system call. If you're using bash, it doesn't do certain kinds of escaping between double quotes. If you want things like \n, \t, or \xnn to be escaped, the following syntax is a bash extension:
python test.py $'thing1\nthing2'
Note that the above example uses single quotes and not double quotes. That's important. Using double quotes causes different rules to apply. You can also do:
python test.py "thing1
thing2"
Here's some more info on bash quoting if you're interested. Even if you're not using bash, it's still good reading:
http://mywiki.wooledge.org/Quotes
This one is relatively simple and I am surprised no one has said it.
In your python script just write the following code
print string.replace("\\n", "\n")
and you will get the string printed with the new line and not the \n.

Passing arguments to a Python script from a shell variable containing quoted spaces

I am calling a python script through a bash wrapper, but I'm having trouble dealing with arguments that contain quoted spaces.
I assemble the arguments to the python script into a bash variable, such as
opt="-c start.txt"
opt+="--self 'name Na'"
Then call the python script with something like:
python test_args.py $opt
When printing sys.argv in Python, I get
['test-args.py', '-c', 'start.txt', '--self', "'name", "Na'"]
instead of the expected
['test-args.py', '-c', 'start.txt', '--self', 'name Na']
I tried using an array when calling the script, such as
python test_args.py ${opt[#]}
but then I get
['test-args.py', "-c start.txt --self 'name Na'"]
Any other ideas?
Use an array, but store each argument as a separate element in the array:
opt=(-c start.txt)
opt+=(--self 'name Na')
python test_args.py "${opt[#]}"
See BashFAQ #050.
This is what the shlex module is for.
The shlex class makes it easy to write lexical analyzers for simple
syntaxes resembling that of the Unix shell. This will often be useful
for writing minilanguages, (for example, in run control files for
Python applications) or for parsing quoted strings.
Your instinct to embed spaces inside the variable's value was good, but when the value is simply expanded during the command line parsing their special meaning is lost as you saw. You need to expand the variable before the command line to your python script is parsed:
set -f
eval python test_args.py $opt
set +f
That will expand to:
python test_args.py -c start.txt --self 'name Na'
Which will then be parsed correctly with the quotes regaining their special meaning.
Edit: I've added set -f/+f (aka -/+o noglob) around the eval to disable file globbing although that wasn't an issue in the OP's example that's not an unheard of issue with eval. (Another, stronger caveat is to never eval user input unless you take extreme care to make sure it won't blow up into something nasty. If you don't control the value being eval-ed, you can't be sure what will happen.)

How do I get the ORIGINAL command line in Python? with spaces, tabs, etc [duplicate]

This question already has answers here:
Closed 11 years ago.
Possible Duplicate:
Full command line as it was typed
sys.argv is already a parsed array, losing double quotes, double spaces and maybe even tab characters (it all depends on the OS/shell, of course).
How can I access the original string before parsing?
Shortly, you don't.
Long: on Unix command line is parsed by the calling program and by the time python starts you already have the command line parsed.
PS. On Windows it is possible, but I suppose you are looking for a general response.
You can't do that explicitly because, this is how a shell passes the arguments to a program.
The sys.argv is all Python got. The shell processed the filename generation (globs), parameter (variable) expansion, quotes, and word splitting before passing the arguments to the Python process (in Unix; in Windows it's the startup actually parsing it, but for portability, you can't rely on that).
However, remember that POSIX shell quoting rules allow passing any characters you may want (except NUL bytes that terminate strings).
Compare starting a process from Python using subprocess.call with or without the shell argument set. With shell=False the list of strings is what comes up in the sys.argv in the started process (starting with the script path; parameters processed by Python itself are removed) while with shell=True the string is passed to the shell which interprets it according to its own rules.

Categories

Resources