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How to extract all comma delimited numbers inside () bracked and ignore any text

I am trying to extract the comma delimited numbers inside () brackets from a string. I can get the numbers if that are alone in a line. But i cant seem to find a solution to get the numbers when other surrounding text is involved. Any help will be appreciated. Below is the code that I current use in python.
line = """
Abuta has a history of use in the preparation of curares, an arrow poison to cause asphyxiation in hunting
It has also been used in traditional South American and Indian Ayurvedic medicines (101065,101066,101067)
The genus name Cissampelos is derived from the Greek words for ivy and vine (101065)
"""
line = each.strip()
regex_criteria = r'"^([1-9][0-9]*|\([1-9][0-9]*\}|\(([1-9][0-9]*,?)+[1-9][0-9]*\))$"gm'
if (line.__contains__('(') and line.__contains__(')') and not re.search('[a-zA-Z]', refline)):
refline = line[line.find('(')+1:line.find(')')]
if not re.search('[a-zA-Z]', refline):

Remove the ^, $ is whats preventing you from getting all the numbers. And gm flags wont work in python re.
You can change your regex to :([1-9][0-9]*|\([1-9][0-9]*\}|\(?:([1-9][0-9]*,?)+[1-9][0-9]*\)) if you want to get each number separately.
Or you can simplify your pattern to (?<=[(,])[1-9][0-9]+(?=[,)])
Test regex here: https://regex101.com/r/RlGwve/1
Python code:
import re
line = """
Abuta has a history of use in the preparation of curares, an arrow poison to cause asphyxiation in hunting
It has also been used in traditional South American and Indian Ayurvedic medicines (101065,101066,101067)
The genus name Cissampelos is derived from the Greek words for ivy and vine (101065)
"""
print(re.findall(r'(?<=[(,])[1-9][0-9]+(?=[,)])', line))
# ['101065', '101066', '101067', '101065']
(?<=[(,])[1-9][0-9]+(?=[,)])
The above pattern tells to match numbers which begin with 1-9 followed by one or more digits, only if the numbers begin with or end with either comma or brackets.

Here's another option:
pattern = re.compile(r"(?<=\()[1-9]+\d*(?:,[1-9]\d*)*(?=\))")
results = [match[0].split(",") for match in pattern.finditer(line)]
(?<=\(): Lookbehind for (
[1-9]+\d*: At least one number (would \d+ work too?)
(?:,[1-9]\d*)*: Zero or multiple numbers after a ,
(?=\)): Lookahead for )
Result for your line:
[['101065', '101066', '101067'], ['101065']]
If you only want the comma separated numbers:
pattern = re.compile(r"(?<=\()[1-9]+\d*(?:,[1-9]\d*)+(?=\))")
results = [match[0].split(",") for match in pattern.finditer(line)]
(?:,[1-9]\d*)+: One or more numbers after a ,
Result:
[['101065', '101066', '101067']]
Now, if your line could also look like
line = """
Abuta has a history of use in the preparation of curares, an arrow poison to cause asphyxiation in hunting
It has also been used in traditional South American and Indian Ayurvedic medicines ( 101065,101066, 101067 )
The genus name Cissampelos is derived from the Greek words for ivy and vine (101065)
"""
then you have to sprinkle the pattern with \s* and remove the whitespace afterwards (here with str.translate and str.maketrans):
pattern = re.compile(r"(?<=\()\s*[1-9]+\d*(?:\s*,\s*[1-9]\d*\s*)*(?=\))")
table = str.maketrans("", "", " ")
results = [match[0].translate(table).split(",") for match in pattern.finditer(line)]
Result:
[['101065', '101066', '101067'], ['101065']]

Using the pypi regex module you could also use capture groups:
\((?P<num>\d+)(?:,(?P<num>\d+))*\)
The pattern matches:
\( Match (
(?P<num>\d+) Capture group, match 1+ digits
(?:,(?P<num>\d+))* Optionally repeat matching , and 1+ digits in a capture group
\) Match )
Regex demo | Python demo
Example code
import regex
pattern = r"\((?P<num>\d+)(?:,(?P<num>\d+))*\)"
line = """
Abuta has a history of use in the preparation of curares, an arrow poison to cause asphyxiation in hunting
It has also been used in traditional South American and Indian Ayurvedic medicines (101065,101066,101067)
The genus name Cissampelos is derived from the Greek words for ivy and vine (101065)
"""
matches = regex.finditer(pattern, line)
for _, m in enumerate(matches, start=1):
print(m.capturesdict())
Output
{'num': ['101065', '101066', '101067']}
{'num': ['101065']}

regex - 1. add space between string, 2. ignore certain pattern

I have two things that I would like to replace in my text files.
Add " " between String end with '#' (eg. ABC#) into (eg. A B C)
Ignore certain Strings end with 'H' or 'xx:xx:xx' (eg. 1111H - ignore), (eg. if is 1111, process into 'one one one one')
so far this is my code..
import re
dest1 = r"C:\\Users\CL\\Desktop\\Folder"
files = os.listdir(dest1)
#dictionary to process Int to Str
numbers = {"0":"ZERO ", "1":"ONE ", "2":"TWO ", "3":"THREE ", "4":"FOUR ", "5":"FIVE ", "6":"SIX ", "7":"SEVEN ", "8":"EIGHT ", "9":"NINE "}
for f in files:
text= open(dest1+ "\\" + f,"r")
text_read = text.read()
#num sub pattern
text = re.sub('[%s]\s?' % ''.join(numbers), lambda x: numbers[x.group().strip()]+' ', text)
#write result to file
data = f.write(text)
f.close()
sample .txt
1111H I have 11 ABC# apples
11:12:00 I went to my# room
output required
1111H I have ONE ONE A B C apples
11:12:00 I went to M Y room
also.. i realized when I write the new result, the format gets 'messy' without the breaks. not sure why.
#current output
ONE ONE ONE ONE H - I HAVE ONE ONE ABC# APPLES
ONE ONE ONE TWO H - I WENT TO MY# ROOM
#overwritten output
ONE ONE ONE ONE H - I HAVE ONE ONE ABC# APPLES ONE ONE ONE TWO H - I WENT TO MY# ROOM

You can use
def process_match(x):
if x.group(1):
return " ".join(x.group(1).upper())
elif x.group(2):
return f'{numbers[x.group(2)] }'
else:
return x.group()
print(re.sub(r'\b(?:\d+[A-Z]+|\d{2}:\d{2}:\d{2})\b|\b([A-Za-z]+)#|([0-9])', process_match, text_read))
# => 1111H I have ONE ONE A B C apples
# 11:12:00 I went to M Y room
See the regex demo. The main idea behind this approach is to parse the string only once capturing or not parts of it, and process each match on the go, either returning it as is (if it was not captured) or converted chunks of text (if the text was captured).
Regex details:
\b(?:\d+[A-Z]+|\d{2}:\d{2}:\d{2})\b - a word boundary, and then either one or more digits and one or more uppercase letters, or three occurrences of colon-separated double digits, and then a word boundary
| - or
\b([A-Za-z]+)# - Group 1: words with # at the end: a word boundary, then oneor more letters and a #
| - or
([0-9]) - Group 2: an ASCII digit.

Dealing with comma and fullstops as per convention

I have various instance of strings such as:
- hello world,i am 2000to -> hello world, i am 2000 to
- the state was 56,869,12th -> the state was 66,869, 12th
- covering.2% -> covering. 2%
- fiji,295,000 -> fiji, 295,000
For dealing with first case, I came up with two step regex:
re.sub(r"(?<=[,])(?=[^\s])(?=[^0-9])", r" ", text) # hello world, i am 20,000to
re.sub(r"(?<=[0-9])(?=[.^[a-z])", r" ", text) # hello world, i am 20,000 to
But this breaks the text in some different ways and other cases are not covered as well. Can anyone suggest a more general regex that solves all cases properly. I've tried using replace, but it does some unintended replacements which in turn raise some other problems. I'm not an expert in regex, would appreciate pointers.

This approach covers your cases above by breaking the text into tokens:
in_list = [
'hello world,i am 2000to',
'the state was 56,869,12th',
'covering.2%',
'fiji,295,000',
'and another example with a decimal 12.3not4,5 is right out',
'parrot,, is100.00% dead'
'Holy grail runs for this portion of 100 minutes,!, 91%. Fascinating'
]
tokenizer = re.compile(r'[a-zA-Z]+[\.,]?|(?:\d{1,3}(?:,\d{3})+|\d+)(?:\.\d+)?(?:%|st|nd|rd|th)?[\.,]?')
for s in in_list:
print(' '.join(re.findall(pattern=tokenizer, string=s)))
# hello world, i am 2000 to
# the state was 56,869, 12th
# covering. 2%
# fiji, 295,000
# and another example with a decimal 12.3 not 4, 5 is right out
# parrot, is 100.00% dead
# Holy grail runs for this portion of 100 minutes, 91%. Fascinating
Breaking up the regex, each token is the longest available substring with:
Only letters with or without a period or comma,[a-zA-Z]+[\.,]?
OR |
A number-ish expression which could be
1 to 3 digits \d{1,3} followed by any number of groups of comma + 3 digits (?:,\d{3})+
OR | any number of comma-free digits \d+
optionally a decimal place followed by at least one digit (?:\.\d+),
optionally a suffix (percent, 'st', 'nd', 'rd', 'th') (?:[\.,%]|st|nd|rd|th)?
optionally period or comma [\.]?
Note the (?:blah) is used to suppress re.findall's natural desire to tell you how every parenthesized group matches up on an individual basis. In this case we just want it to walk forward through the string, and the ?: accomplishes this.

joining multiple regular expression for readability

I have following requirements in date which can be any of the following format.
mm/dd/yyyy or dd Mon YYYY
Few examples are shown below
04/20/2009 and 24 Jan 2001
To handle this I have written regular expression as below
Few text scenarios are metnioned below
txt1 = 'Lithium 0.25 (7/11/77). LFTS wnl. Urine tox neg. Serum tox
+ fluoxetine 500; otherwise neg. TSH 3.28. BUN/Cr: 16/0.83. Lipids unremarkable. B12 363, Folate >20. CBC: 4.9/36/308 Pertinent Medical
Review of Systems Constitutional:'
txt2 = "s The patient is a 44 year old married Caucasian woman,
unemployed Decorator, living with husband and caring for two young
children, who is referred by Capitol Hill Hospital PCP, Dr. Heather
Zubia, for urgent evaluation/treatment till first visit with Dr. Toney
Winkler IN EIGHT WEEKS on 24 Jan 2001."
date = re.findall(r'(?:\b(?<!\.)[\d{0,2}]+)'
'(?:[/-]\d{0,}[/-]\d{2,4}) | (?:\b(?<!\.)[\d{1,2}]+)[th|st|nd]*'
' (?:[Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec][a-z]*) \d{2,4}', txtData)
I am not getting 24 Jan 2001 where as if I run individually (?:\b(?<!\.)[\d{1,2}]+)[th|st|nd]* (?:[Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec][a-z]*) \d{2,4}' I am able to get output.
Question 1: What is bug in above expression?
Question 2: I want to combine both to make more readable as I have to parse any other formats so I used join as shown below
RE1 = '(?:\b(?<!\.)[\d{0,2}]+) (?:[/-]\d{0,}[/-]\d{2,4})'
RE2 = '(?:\b(?<!\.)[\d{1,2}]+)[th|st|nd]* (?:[Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec][a-z]*) \d{2,4}'
regex_all = '|'.join([RE1, RE2])
regex_all = re.compile(regex_all)
date = regex_all.findall(txtData) // notice here txtData can be any one of the above string.
I am getting output as NaN in case of above for date.
Please suggest what is the mistake if I join.
Thanks for your help.

Note that it is a very bad idea to join such long patterns that also match at the same location within the string. That would cause the regex engine to backtrack too much, and possibly lead to crashes and slowdown. If there is a way to re-write the alternations so that they could only match at different locations, or even get rid of them completely, do it.
Besides, you should use grouping constructs (...) to groups sequences of patterns, and only use [...] character classes when you need to matches specific chars.
Also, your alternatives are overlapping, you may combine them easily. See the fixed regex:
\b(?<!\.)\d{1,2}(?:[/-]\d+[/-]|(?:th|st|[nr]d)?\s*(?:(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec)[a-z]*))\s*(?:\d{4}|\d{2})\b
See the regex demo.
Details
\b - a word boundary
(?<!\.) - no . immediately to the left of the current location
\d{1,2} - 1 or 2 digits
(?: - start of a non-capturing alternation group:
[/-]\d+[/-] - / or -, 1+ digits, - or /
| - or
(?:th|st|[nr]d)?\s*(?:
(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec)[a-z]*)) - th, st, nd or rd (optionally), followed with 0+ whitespaces, and then month names
\s* - 0+ whitespaces
(?:\d{4}|\d{2}) - 2 or 4 digits
\b - trailing word boundary.
Another note: if you want to match the date-like strings with two matching delimiters, you will need to capture the first one, and use a backreference to match the second one, see this regex demo. In Python, you would need a re.finditer to get those matches.
See this Python demo:
import re
rx = r"\b(?<!\.)\d{1,2}(?:([/-])\d+\1|(?:th|st|[nr]d)?\s*(?:(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec)[a-z]*))\s*(?:\d{4}|\d{4})\b"
s = "Lithium 0.25 (7/11/77). LFTS wnl. Urine tox neg. Serum tox\nfluoxetine 500; otherwise neg. TSH 3.28. BUN/Cr: 16/0.83. Lipids unremarkable. B12 363, Folate >20. CBC: 4.9/36/308 Pertinent Medical\nReview of Systems Constitutional:\n\nThe patient is a 44 year old married Caucasian woman, unemployed Decorator, living with husband and caring for two young children, who is referred by Capitol Hill Hospital PCP, Dr. Heather Zubia, for urgent evaluation/treatment till first visit with Dr. Toney Winkler IN EIGHT WEEKS on 24 Jan 2001"
print([x.group(0) for x in re.finditer(rx, s, re.I)])
# => ['7/11/77', '24 Jan 2001']

I think your approach is too complicated. I suggest using a combination of a simple regex and strptime().
import re
from datetime import datetime
date_formats = ['%m/%d/%Y', '%d %b %Y']
pattern = re.compile(r'\b(\d\d?/\d\d?/\d{4}|\d\d? \w{3} \d{4})\b')
data = "... your string ..."
for match in re.findall(pattern, data):
print("Trying to parse '%s'" % match)
for fmt in date_formats:
try:
date = datetime.strptime(match, fmt)
print(" OK:", date)
break
except:
pass
The advantage of this approach is, besides a much more manageable regex, that it won't pick dates that look plausible but do not exist, like 2/29/2000 (whereas 2/29/2004 works).

r'(?:\b(?<!\.)[\d{0,2}]+)'
'(?:[/-]\d{0,}[/-]\d{2,4}) | (?:\b(?<!\.)[\d{1,2}]+)[th|st|nd]*'
' (?:[Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec][a-z]*) \d{2,4}'
you should use raw strings (r'foo') for each string, not only the first one. This way backslashes (\) will be considered as normal character and usable by the re library.
[abc|def] matches any character between the [], while (one|two|three) matches any expression (one, two, or three)

Regex to match strings in quotes that contain only 3 or less capitalized words

I've searched and searched, but can't find an any relief for my regex woes.
I wrote the following dummy sentence:
Watch Joe Smith Jr. and Saul "Canelo" Alvarez fight Oscar de la Hoya and Genaddy Triple-G Golovkin for the WBO belt GGG. Canelo Alvarez and Floyd 'Money' Mayweather fight in Atlantic City, New Jersey. Conor MacGregor will be there along with Adonis Superman Stevenson and Mr. Sugar Ray Robinson. "Here Goes a String". 'Money Mayweather'. "this is not a-string", "this is not A string", "This IS a" "Three Word String".
I'm looking for a regular expression that will return the following when used in Python 3.6:
Canelo, Money, Money Mayweather, Three Word String
The regex that has gotten me the closest is:
(["'])[A-Z](\\?.)*?\1
I want it to only match strings of 3 capitalized words or less immediately surrounded by single or double quotes. Unfortunately, so far it seem to match any string in quotes, no matter what the length, no matter what the content, as long is it begins with a capital letter.
I've put a lot of time into trying to hack through it myself, but I've hit a wall. Can anyone with stronger regex kung-fu give me an idea of where I'm going wrong here?

Try to use this one: (["'])((?:[A-Z][a-z]+ ?){1,3})\1
(["']) - opening quote
([A-Z][a-z]+ ?){1,3} - Capitalized word repeating 1 to 3 times separated by space
[A-Z] - capital char (word begining char)
[a-z]+ - non-capital chars (end of word)
_? - space separator of capitalized words (_ is a space), ? for single word w/o ending space
{1,3} - 1 to 3 times
\1 - closing quote, same as opening
Group 2 is what you want.
Match 1
Full match 29-37 `"Canelo"`
Group 1. 29-30 `"`
Group 2. 30-36 `Canelo`
Match 2
Full match 146-153 `'Money'`
Group 1. 146-147 `'`
Group 2. 147-152 `Money`
Match 3
Full match 318-336 `'Money Mayweather'`
Group 1. 318-319 `'`
Group 2. 319-335 `Money Mayweather`
Match 4
Full match 398-417 `"Three Word String"`
Group 1. 398-399 `"`
Group 2. 399-416 `Three Word String`
RegEx101 Demo: https://regex101.com/r/VMuVae/4

Working with the text you've provided, I would try to use regular expression lookaround to get the words surrounded by quotes and then apply some conditions on those matches to determine which ones meet your criterion. The following is what I would do:
[p for p in re.findall('(?<=[\'"])[\w ]{2,}(?=[\'"])', txt) if all(x.istitle() for x in p.split(' ')) and len(p.split(' ')) <= 3]
txt is the text you've provided here. The output is the following:
# ['Canelo', 'Money', 'Money Mayweather', 'Three Word String']
Cleaner:
matches = []
for m in re.findall('(?<=[\'"])[\w ]{2,}(?=[\'"])', txt):
if all(x.istitle() for x in m.split(' ')) and len(m.split(' ')) <= 3:
matches.append(m)
print(matches)
# ['Canelo', 'Money', 'Money Mayweather', 'Three Word String']

Here's my go at it: ([\"'])(([A-Z][^ ]*? ?){1,3})\1