Creating Corpus from wiki dump file using Jupyter notebook - python

I'm trying to follow this page to create a wiki corpus, but I'm using Jupiter notebook https://www.kdnuggets.com/2017/11/building-wikipedia-text-corpus-nlp.html
this is my code:
import sys
from gensim.test.utils import datapath
from gensim.corpora import WikiCorpus
path_to_wiki_dump = datapath("enwiki-latest-pages-articles.xml.bz2")
wiki = WikiCorpus(path_to_wiki_dump)
output = open('wiki_en.txt', 'w', encoding='utf-8')
i = 0
for text in wiki.get_texts():
output.write(bytes(' '.join(text), 'utf-8').decode('utf-8') + '\n')
i = i + 1
if (i % 10000 == 0):
print('Processed ' + str(i) + ' articles')
output.close()
print('Processing complete!')
The Error I got was
FileNotFoundError: [Errno 2] No such file or directory: '/opt/anaconda3/lib/python3.8/site-packages/gensim/test/test_data/enwiki-latest-pages-articles.xml.bz2'
All the files are in one place so I'm not sure what's wrong

Did you ever download the file enwiki-latest-pages-articles.xml.bz2 somehow, somewhere?
Did you specifically place it at the path /opt/anaconda3/lib/python3.8/site-packages/gensim/test/test_data/enwiki-latest-pages-articles.xml.bz2?
If not the datapath() function you're using won't construct the right path. (That particular function is meant to find a directory of test data bundled with Gensim, and shouldn't really be used to construct paths to your own dowloaded/created files!)
Instead of using that function, you should just specify the actual path, local to the Jupyter notebook server, where you put the file, as a string argument to WikiCorpus.

Related

how to do docx to pdf conversion using python library without subprocess in linux? [duplicate]

I'am tasked with converting tons of .doc files to .pdf. And the only way my supervisor wants me to do this is through MSWord 2010. I know I should be able to automate this with python COM automation. Only problem is I dont know how and where to start. I tried searching for some tutorials but was not able to find any (May be I might have, but I don't know what I'm looking for).
Right now I'm reading through this. Dont know how useful this is going to be.
A simple example using comtypes, converting a single file, input and output filenames given as commandline arguments:
import sys
import os
import comtypes.client
wdFormatPDF = 17
in_file = os.path.abspath(sys.argv[1])
out_file = os.path.abspath(sys.argv[2])
word = comtypes.client.CreateObject('Word.Application')
doc = word.Documents.Open(in_file)
doc.SaveAs(out_file, FileFormat=wdFormatPDF)
doc.Close()
word.Quit()
You could also use pywin32, which would be the same except for:
import win32com.client
and then:
word = win32com.client.Dispatch('Word.Application')
You can use the docx2pdf python package to bulk convert docx to pdf. It can be used as both a CLI and a python library. It requires Microsoft Office to be installed and uses COM on Windows and AppleScript (JXA) on macOS.
from docx2pdf import convert
convert("input.docx")
convert("input.docx", "output.pdf")
convert("my_docx_folder/")
pip install docx2pdf
docx2pdf input.docx output.pdf
Disclaimer: I wrote the docx2pdf package. https://github.com/AlJohri/docx2pdf
I have tested many solutions but no one of them works efficiently on Linux distribution.
I recommend this solution :
import sys
import subprocess
import re
def convert_to(folder, source, timeout=None):
args = [libreoffice_exec(), '--headless', '--convert-to', 'pdf', '--outdir', folder, source]
process = subprocess.run(args, stdout=subprocess.PIPE, stderr=subprocess.PIPE, timeout=timeout)
filename = re.search('-> (.*?) using filter', process.stdout.decode())
return filename.group(1)
def libreoffice_exec():
# TODO: Provide support for more platforms
if sys.platform == 'darwin':
return '/Applications/LibreOffice.app/Contents/MacOS/soffice'
return 'libreoffice'
and you call your function:
result = convert_to('TEMP Directory', 'Your File', timeout=15)
All resources:
https://michalzalecki.com/converting-docx-to-pdf-using-python/
I have worked on this problem for half a day, so I think I should share some of my experience on this matter. Steven's answer is right, but it will fail on my computer. There are two key points to fix it here:
(1). The first time when I created the 'Word.Application' object, I should make it (the word app) visible before open any documents. (Actually, even I myself cannot explain why this works. If I do not do this on my computer, the program will crash when I try to open a document in the invisible model, then the 'Word.Application' object will be deleted by OS. )
(2). After doing (1), the program will work well sometimes but may fail often. The crash error "COMError: (-2147418111, 'Call was rejected by callee.', (None, None, None, 0, None))" means that the COM Server may not be able to response so quickly. So I add a delay before I tried to open a document.
After doing these two steps, the program will work perfectly with no failure anymore. The demo code is as below. If you have encountered the same problems, try to follow these two steps. Hope it helps.
import os
import comtypes.client
import time
wdFormatPDF = 17
# absolute path is needed
# be careful about the slash '\', use '\\' or '/' or raw string r"..."
in_file=r'absolute path of input docx file 1'
out_file=r'absolute path of output pdf file 1'
in_file2=r'absolute path of input docx file 2'
out_file2=r'absolute path of outputpdf file 2'
# print out filenames
print in_file
print out_file
print in_file2
print out_file2
# create COM object
word = comtypes.client.CreateObject('Word.Application')
# key point 1: make word visible before open a new document
word.Visible = True
# key point 2: wait for the COM Server to prepare well.
time.sleep(3)
# convert docx file 1 to pdf file 1
doc=word.Documents.Open(in_file) # open docx file 1
doc.SaveAs(out_file, FileFormat=wdFormatPDF) # conversion
doc.Close() # close docx file 1
word.Visible = False
# convert docx file 2 to pdf file 2
doc = word.Documents.Open(in_file2) # open docx file 2
doc.SaveAs(out_file2, FileFormat=wdFormatPDF) # conversion
doc.Close() # close docx file 2
word.Quit() # close Word Application
unoconv (writen in Python) and OpenOffice running as a headless daemon.
https://github.com/unoconv/unoconv
http://dag.wiee.rs/home-made/unoconv/
Works very nicely for doc, docx, ppt, pptx, xls, xlsx.
Very useful if you need to convert docs or save/convert to certain formats on a server.
As an alternative to the SaveAs function, you could also use ExportAsFixedFormat which gives you access to the PDF options dialog you would normally see in Word. With this you can specify bookmarks and other document properties.
doc.ExportAsFixedFormat(OutputFileName=pdf_file,
ExportFormat=17, #17 = PDF output, 18=XPS output
OpenAfterExport=False,
OptimizeFor=0, #0=Print (higher res), 1=Screen (lower res)
CreateBookmarks=1, #0=No bookmarks, 1=Heading bookmarks only, 2=bookmarks match word bookmarks
DocStructureTags=True
);
The full list of function arguments is: 'OutputFileName', 'ExportFormat', 'OpenAfterExport', 'OptimizeFor', 'Range', 'From', 'To', 'Item', 'IncludeDocProps', 'KeepIRM', 'CreateBookmarks', 'DocStructureTags', 'BitmapMissingFonts', 'UseISO19005_1', 'FixedFormatExtClassPtr'
It's worth noting that Stevens answer works, but make sure if using a for loop to export multiple files to place the ClientObject or Dispatch statements before the loop - it only needs to be created once - see my problem: Python win32com.client.Dispatch looping through Word documents and export to PDF; fails when next loop occurs
If you don't mind using PowerShell have a look at this Hey, Scripting Guy! article. The code presented could be adopted to use the wdFormatPDF enumeration value of WdSaveFormat (see here).
This blog article presents a different implementation of the same idea.
I have modified it for ppt support as well. My solution support all the below-specified extensions.
word_extensions = [".doc", ".odt", ".rtf", ".docx", ".dotm", ".docm"]
ppt_extensions = [".ppt", ".pptx"]
My Solution: Github Link
I have modified code from Docx2PDF
I tried the accepted answer but wasn't particularly keen on the bloated PDFs Word was producing which was usually an order of magnitude bigger than expected. After looking how to disable the dialogs when using a virtual PDF printer I came across Bullzip PDF Printer and I've been rather impressed with its features. It's now replaced the other virtual printers I used previously. You'll find a "free community edition" on their download page.
The COM API can be found here and a list of the usable settings can be found here. The settings are written to a "runonce" file which is used for one print job only and then removed automatically. When printing multiple PDFs we need to make sure one print job completes before starting another to ensure the settings are used correctly for each file.
import os, re, time, datetime, win32com.client
def print_to_Bullzip(file):
util = win32com.client.Dispatch("Bullzip.PDFUtil")
settings = win32com.client.Dispatch("Bullzip.PDFSettings")
settings.PrinterName = util.DefaultPrinterName # make sure we're controlling the right PDF printer
outputFile = re.sub("\.[^.]+$", ".pdf", file)
statusFile = re.sub("\.[^.]+$", ".status", file)
settings.SetValue("Output", outputFile)
settings.SetValue("ConfirmOverwrite", "no")
settings.SetValue("ShowSaveAS", "never")
settings.SetValue("ShowSettings", "never")
settings.SetValue("ShowPDF", "no")
settings.SetValue("ShowProgress", "no")
settings.SetValue("ShowProgressFinished", "no") # disable balloon tip
settings.SetValue("StatusFile", statusFile) # created after print job
settings.WriteSettings(True) # write settings to the runonce.ini
util.PrintFile(file, util.DefaultPrinterName) # send to Bullzip virtual printer
# wait until print job completes before continuing
# otherwise settings for the next job may not be used
timestamp = datetime.datetime.now()
while( (datetime.datetime.now() - timestamp).seconds < 10):
if os.path.exists(statusFile) and os.path.isfile(statusFile):
error = util.ReadIniString(statusFile, "Status", "Errors", '')
if error != "0":
raise IOError("PDF was created with errors")
os.remove(statusFile)
return
time.sleep(0.1)
raise IOError("PDF creation timed out")
I was working with this solution but I needed to search all .docx, .dotm, .docm, .odt, .doc or .rtf and then turn them all to .pdf (python 3.7.5). Hope it works...
import os
import win32com.client
wdFormatPDF = 17
for root, dirs, files in os.walk(r'your directory here'):
for f in files:
if f.endswith(".doc") or f.endswith(".odt") or f.endswith(".rtf"):
try:
print(f)
in_file=os.path.join(root,f)
word = win32com.client.Dispatch('Word.Application')
word.Visible = False
doc = word.Documents.Open(in_file)
doc.SaveAs(os.path.join(root,f[:-4]), FileFormat=wdFormatPDF)
doc.Close()
word.Quit()
word.Visible = True
print ('done')
os.remove(os.path.join(root,f))
pass
except:
print('could not open')
# os.remove(os.path.join(root,f))
elif f.endswith(".docx") or f.endswith(".dotm") or f.endswith(".docm"):
try:
print(f)
in_file=os.path.join(root,f)
word = win32com.client.Dispatch('Word.Application')
word.Visible = False
doc = word.Documents.Open(in_file)
doc.SaveAs(os.path.join(root,f[:-5]), FileFormat=wdFormatPDF)
doc.Close()
word.Quit()
word.Visible = True
print ('done')
os.remove(os.path.join(root,f))
pass
except:
print('could not open')
# os.remove(os.path.join(root,f))
else:
pass
The try and except was for those documents I couldn't read and won't exit the code until the last document.
You should start from investigating so called virtual PDF print drivers.
As soon as you will find one you should be able to write batch file that prints your DOC files into PDF files. You probably can do this in Python too (setup printer driver output and issue document/print command in MSWord, later can be done using command line AFAIR).
import docx2txt
from win32com import client
import os
files_from_folder = r"c:\\doc"
directory = os.fsencode(files_from_folder)
amount = 1
word = client.DispatchEx("Word.Application")
word.Visible = True
for file in os.listdir(directory):
filename = os.fsdecode(file)
print(filename)
if filename.endswith('docx'):
text = docx2txt.process(os.path.join(files_from_folder, filename))
print(f'{filename} transfered ({amount})')
amount += 1
new_filename = filename.split('.')[0] + '.txt'
try:
with open(os.path.join(files_from_folder + r'\txt_files', new_filename), 'w', encoding='utf-8') as t:
t.write(text)
except:
os.mkdir(files_from_folder + r'\txt_files')
with open(os.path.join(files_from_folder + r'\txt_files', new_filename), 'w', encoding='utf-8') as t:
t.write(text)
elif filename.endswith('doc'):
doc = word.Documents.Open(os.path.join(files_from_folder, filename))
text = doc.Range().Text
doc.Close()
print(f'{filename} transfered ({amount})')
amount += 1
new_filename = filename.split('.')[0] + '.txt'
try:
with open(os.path.join(files_from_folder + r'\txt_files', new_filename), 'w', encoding='utf-8') as t:
t.write(text)
except:
os.mkdir(files_from_folder + r'\txt_files')
with open(os.path.join(files_from_folder + r'\txt_files', new_filename), 'w', encoding='utf-8') as t:
t.write(text)
word.Quit()
The Source Code, see here:
https://neculaifantanaru.com/en/python-full-code-how-to-convert-doc-and-docx-files-to-pdf-from-the-folder.html
I would suggest ignoring your supervisor and use OpenOffice which has a Python api. OpenOffice has built in support for Python and someone created a library specific for this purpose (PyODConverter).
If he isn't happy with the output, tell him it could take you weeks to do it with word.

Python pathlib not accepted by Pandas.ExcelWriter(..)

After finally getting Pandas to output my file as a spreadsheet (silly issue), I ran into an issue with the file path input not being read properly, even as a raw string. Eventually I stumbled upon the pathlib library, and it's been successful in allowing me to read and write to my file as needed. However, now I'm back to ExcelWriter complaining about my file again.
Here's my ugly attempt at using pathlib to create the paths (directories substituted):
import pandas as pd
core = input("Core number ('core_#k'): ")
part = input("Part name ('part_#'): ")
file_level = 'core_' + core + 'k'
in_file_name = file_level + '_part_' + part + '.txt'
out = in_file_name[:-4] + '.ods'
# format filenames
path_raw = Path("DRIVELABEL:\someDirectories\\")
raw_text_path = Path(path_raw) / "raw_text" / file_level / in_file_name
spreadsheet_path = Path(path_raw) / "spreadsheets" / file_level / out
Error:
FileNotFoundError: [Errno 2] No such file or directory: 'DRIVELABEL:/SomeDirectories/outputFile.ods'
I can't figure out how to get ExcelWriter to write this file properly. The only thing I can think right now is that the file_level for spreadsheet_path doesn't exist yet, but shouldn't it be created at write?
with pd.ExcelWriter(spreadsheet_path.as_posix(), engine='odf') as doc:
df.to_excel(doc, sheet_name="Sheet1", index=False)

Creating view in browser functionality with python

I have been struggling with this problem for a while but can't seem to find a solution for it. The situation is that I need to open a file in browser and after the user closes the file the file is removed from their machine. All I have is the binary data for that file. If it matters, the binary data comes from Google Storage using the download_as_string method.
After doing some research I found that the tempfile module would suit my needs, but I can't get the tempfile to open in browser because the file only exists in memory and not on the disk. Any suggestions on how to solve this?
This is my code so far:
import tempfile
import webbrowser
# grabbing binary data earlier on
temp = tempfile.NamedTemporaryFile()
temp.name = "example.pdf"
temp.write(binary_data_obj)
temp.close()
webbrowser.open('file://' + os.path.realpath(temp.name))
When this is run, my computer gives me an error that says that the file cannot be opened since it is empty. I am on a Mac and am using Chrome if that is relevant.
You could try using a temporary directory instead:
import os
import tempfile
import webbrowser
# I used an existing pdf I had laying around as sample data
with open('c.pdf', 'rb') as fh:
data = fh.read()
# Gives a temporary directory you have write permissions to.
# The directory and files within will be deleted when the with context exits.
with tempfile.TemporaryDirectory() as temp_dir:
temp_file_path = os.path.join(temp_dir, 'example.pdf')
# write a normal file within the temp directory
with open(temp_file_path, 'wb+') as fh:
fh.write(data)
webbrowser.open('file://' + temp_file_path)
This worked for me on Mac OS.

Make python save to a folder created in the directory of the py file being run

I'm trying to save a bunch of pages in a folder next to the py file that creates them. I'm on windows so when I try to make the trailing backslash for the file-path it makes a special character instead.
Here's what I'm talking about:
from bs4 import BeautifulSoup
import urllib2, urllib
import csv
import requests
from os.path import expanduser
print "yes"
with open('intjpages.csv', 'rb') as csvfile:
pagereader = csv.reader(open("intjpages.csv","rb"))
i=0
for row in pagereader:
print row
agentheader = {'User-Agent': 'Nerd'}
request = urllib2.Request(row[0],headers=agentheader)
url = urllib2.urlopen(request)
soup = BeautifulSoup(url)
for div in soup.findAll('div', {"class" : "side"}):
div.extract()
body = soup.find_all("div", { "class" : "md" })
name = "page" + str(i) + ".html"
path_to_file = "\cleanishdata\"
outfile = open(path_to_file + name, 'w')
#outfile = open(name,'w') #this works fine
body=str(body)
outfile.write(body)
outfile.close()
i+=1
I can save the files to the same folder that the .py file is in, but when I process the files using rapidminer it includes the program too. Also it would just be neater if I could save it in a directory.
I am surprised this hasn't already been answered on the entire internet.
EDIT: Thanks so much! I ended up using information from both of your answers. IDLE was making me use r'\string\' to concatenate the strings with the backslashes. I needed use the path_to_script technique of abamert to solve the problem of creating a new folder wherever the py file is. Thanks again! Here's the relevant coding changes:
name = "page" + str(i) + ".txt"
path_to_script_dir = os.path.dirname(os.path.abspath("links.py"))
newpath = path_to_script_dir + r'\\' + 'cleanishdata'
if not os.path.exists(newpath): os.makedirs(newpath)
outfile = open(path_to_script_dir + r'\\cleanishdata\\' + name, 'w')
body=str(body)
outfile.write(body)
outfile.close()
i+=1
Are you sure sure you're escaping your backslashes properly?
The \" in your string "\cleanishdata\" is actually an escaped quote character (").
You probably want
r"\cleanishdata\"
or
"\\cleanishdata\\"
You probably also want to check out the os.path library, particular os.path.join and os.path.dirname.
For example, if your file is in C:\Base\myfile.py and you want to save files to C:\Base\cleanishdata\output.txt, you'd want:
os.path.join(
os.path.dirname(os.path.abspath(sys.argv[0])), # C:\Base\
'cleanishdata',
'output.txt')
A better solution than hardcoding the path to the .py file is to just ask Python for it:
import sys
import os
path_to_script = sys.argv[0]
path_to_script_dir = os.path.dirname(os.path.abspath(path_to_script))
Also, it's generally better to use os.path methods instead of string manipulation:
outfile = open(os.path.join(path_to_script_dir, name), 'w')
Besides making your program continue to work as expected even if you move it to a different location or install it on another machine or give it to a friend, getting rid of the hardcoded paths and the string-based path concatenation means you don't have to worry about backslashes anywhere, and this problem never arises in the first place.

Extracting a .app from a zip file in Python, using ZipFile

I'm trying to extract new revisions of Chromium.app from their snapshots, and I can download the file fine, but when it comes to extracting it, ZipFile either extracts the chrome-mac folder within as a file, says that directories don't exist, etc. I am very new to python, so these errors make little sense to me. Here is what I have so far.
import urllib2
response = urllib2.urlopen('http://build.chromium.org/buildbot/snapshots/chromium-rel-mac/LATEST')
latestRev = response.read()
print latestRev
# we have the revision, now we need to download the zip and extract it
latestZip = urllib2.urlopen('http://build.chromium.org/buildbot/snapshots/chromium-rel-mac/%i/chrome-mac.zip' % (int(latestRev)), '~/Desktop/ChromiumUpdate/%i-update' % (int(latestRev)))
#declare some vars that hold paths n shit
workingDir = '/Users/slehan/Desktop/ChromiumUpdate/'
chromiumZipPath = '%s%i-update.zip' % (workingDir, (int(latestRev)))
chromiumAppPath = 'chrome-mac/' #the path of the chromium executable within the zip file
chromiumAppExtracted = '%s/Chromium.app' % (workingDir) # path of the extracted executable
output = open(chromiumZipPath, 'w') #delete any current file there
output.write(latestZip.read())
output.close()
# we have the .zip now we need to extract the Chromium.app file, it's in ziproot/chrome-mac/Chromium.app
import zipfile, os
zippedFile = open(chromiumZipPath)
zippedChromium = zipfile.ZipFile(zippedFile, 'r')
zippedChromium.extract(chromiumAppPath, workingDir)
#print zippedChromium.namelist()
zippedChromium.close()
#zippedChromium.close()
Any ideas?
It seems you have encountered a bug in Python. This other question details the problem and workarounds. You can elect to use one of those workarounds, or update to Python 2.6.5 or 2.7b2.
One of the workarounds suggests copying the patched zipfile.py module from the fixed Python.
Best of luck!
This seems to be working for me:
import os
import urllib2
import zipfile
from StringIO import StringIO
response = urllib2.urlopen('http://build.chromium.org/buildbot/snapshots/chromium-rel-mac/LATEST')
latestRev = response.read()
print 'getting revision', latestRev
# we have the revision, now we need to download the zip and extract it
locRef='http://build.chromium.org/buildbot/snapshots/chromium-rel-mac/%i/chrome-mac.zip' % (int(latestRev))
latestZip = StringIO(urllib2.urlopen(locRef).read())
# we have the .zip now we need to extract the Chromium.app file, it's in chrome-mac/Chromium.app/
zippedChromium = zipfile.ZipFile(latestZip)
# find all zip members in chrome-mac/Chromium.app
members = [m for m in zippedChromium.namelist() if m.startswith('chrome-mac/Chromium.app/')]
#zippedChromium.extract(chromiumAppPath, workingDir)
target = 'chromium-%s' % latestRev
if os.path.isdir(target):
print 'destination already exists, exiting'
raise SystemExit(1)
os.makedirs(target)
zippedChromium.extractall(target, members)
#zippedChromium.close()
Here's another cut - this is the same technique, but it walks the result to demonstrate that it works.
import os
import urllib2
import zipfile
from StringIO import StringIO
response = urllib2.urlopen('http://build.chromium.org/buildbot/snapshots/chromium-rel-mac/LATEST')
latestRev = response.read()
print 'getting revision', latestRev
# we have the revision, now we need to download the zip and extract it
locRef='http://build.chromium.org/buildbot/snapshots/chromium-rel-mac/%i/chrome-mac.zip' % (int(latestRev))
latestZip = StringIO(urllib2.urlopen(locRef).read())
# we have the .zip now we need to extract the Chromium.app file, it's in chrome-mac/Chromium.app/
zippedChromium = zipfile.ZipFile(latestZip)
# find all zip members in chrome-mac/Chromium.app
members = [m for m in zippedChromium.namelist() if m.startswith('chrome-mac/Chromium.app/')]
#zippedChromium.extract(chromiumAppPath, workingDir)
target = 'chromium-%s' % latestRev
if os.path.isdir(target):
print 'destination already exists, exiting'
raise SystemExit(1)
os.makedirs(target)
zippedChromium.extractall(target, members)
lengths = [
(len(dirnames), len(filenames))
for dirpath, dirnames, filenames in os.walk(target)
]
dirlengths, filelengths = zip(*lengths)
ndirs = sum(dirlengths)
nfiles = sum(filelengths)
print 'extracted %(nfiles)d files in %(ndirs)d dirs' % vars()
#zippedChromium.close()
The output I get when I run it is
> .\getapp.py
getting revision 48479
extracted 537 files in 184 dirs
There is another problem extracting an .app from a zip in Python (which doesn't happen with a typically zip utility). No one else seems to have mentioned this...
The .app can ceases to function post extraction this way, as a result of losing the execution permission bit on the nested binary. You can fix this though, by simply granting that again.
Here's a loose snippet of code that I'm using. Revise this as needed for your purposes (or write a more generic function to handle this situation in a more universal manner):
import os, zipfile
...
ZIP_PATH = APP_PATH + ".zip"
APP_BIN_DIR = os.path.join( APP_PATH, "Contents/MacOS" )
zipfile.ZipFile( ZIP_PATH, 'r' ).extractall( WORK_DIR )
BIN_PATH = os.path.join( APP_BIN_DIR, os.listdir( APP_BIN_DIR )[0] )
os.chmod( BIN_PATH, 0o777 )
My program already knew where to expect the APP_PATH to be found (i.e. within the WORK_DIR). I had to zip it up though, and shoe horn that detail in after the fact. I name my zip like XXXXX.app.zip. I resolve the BIN_PATH here pretty simply without the need to know the name of binary inside the .app, because I know there is only going to be one file in there for my use case. I grant full (777) permissions to it, because I simply delete the .app at the end of my script anyway.

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