Sql Alchemy Insert Statement failing to insert, but no error - python

I am attempting to execute a raw sql insert statement in Sqlalchemy, SQL Alchemy throws no errors when the constructed insert statement is executed but the lines do not appear in the database.
As far as I can tell, it isn't a syntax error (see no 2), it isn't an engine error as the ORM can execute an equivalent write properly (see no 1), it's finding the table it's supposed to write too (see no 3). I think it's a problem with a transaction not being commited and have attempted to address this (see no 4) but this hasn't solved the issue. Is it possible to create a nested transaction and what would start the 'first' so to speak?
Thankyou for any answers.
Some background:
I know that the ORM facilitates this and have used this feature and it works, but is too slow for our application. We decided to try using raw sql for this particular write function due to how often it's called and the ORM for everything else. An equivalent method using the ORM works perfectly, and the same engine is used for both, so it can't be an engine problem right?
I've issued an example of the SQL that the method using raw sql constructs to the database directly and that reads in fine, so I don't think it's a syntax error.
it's communicating with the database properly and can find the table as any syntax errors with table and column names throw a programmatic error so it's not just throwing stuff into the 'void' so to speak.
My first thought after reading around was that it was transaction error and that a transaction was being created and not closed, and so constructed the execute statement as such to ensure a transaction was properly created and commited.
with self.Engine.connect() as connection:
connection.execute(Insert_Statement)
connection.commit
The so called 'Insert Statement' has been converted to text using the sqlalchemy 'text' function, I don't quite understand why it won't execute if I pass the constructed string directly to the execute statement but mention it in case it's relevant.
Other things that may be relevant:
Python3 is running on an individual ec2 instance the postgres database on another. The table in particular is a timescaledb hypertable taking realtime data, hence the need for very fast writes, but probably not relevant.
Currently using pg8000 as dialect for no particular reason other than psycopg2 was throwing errors when trying the execute an equivalent method using the ORM.

Just so this question is answered in case anyone else ends up here:
The issue was a failure to call commit as a method, as #snakecharmerb pointed out. Gord Thompson also provided an alternate method using 'begin' which automatically commits rather than connection which is a 'commit as you go' style transaction.

Related

How to stop a "latent" Python Django cursor execute exception with SQLite

I am trying to automate a complete application schema rebuild in Django. Basically, drop all the old tables, delete the migration and cache file(s), delete the migration history, and then makemigrations and migrate. I understand this will have some scratching their heads but I like to configuration control my test data and load what I need from csv files and "starting from scratch" is much simpler with this model.
I'm hopeful the automation will work against all the different Django-supported databases so trying to come up with an approach that's generic (although some gaps and brute-force).
As noted above, the first step is to drop all the existing tables. Under the assumption that most model changes aren't deletes, I'm doing some class introspection to identify all the models and then attempting to discern if the related tables exist:
app_models = get_all_app_models(models.Model, app_label)
# Loop through and remove models that no longer exist by doing a count, which should
# work no matter the SQL DBMS.
with connection.cursor() as cursor:
for app_model in app_models[:]:
try:
cursor.execute (f'select count (*) from {app_model._meta.db_table}')
except OperationalError:
app_models.remove(app_model)
<lots more code, doing cursor and other stuff that works OK>
Once the above completes, app_models contains tables that remain and the code then works through dropping them (which itself isn't trivial in a generic way).
The processing is contained in a Django view/form and once complete it attempts to render a simple "okey dokey" page. The problem is that an exception is thrown during the render saying "no such table: xxx" and it refers to the execute statement. There is no other call stack context displayed.
The table mentioned was indeed referenced in the execute, in fact it was the last one in the original app_models. Somehow it seems that Django is retaining error information after the cursor is closed (the 'with' cleanup) and somehow executing against it during the render processing. I tried to execute a "good" SQL statement to "clear" the error, but no luck. I tried to "del" the cursor, also no luck.
Update 3/25: After many hours of trial and error, I have found that if I place the above code (along with the rest of the processing) in a separate function and call it from the view/form function I no longer get the spurious call-back to the execute statement. I researched SQLite quite a bit and it seems that OperationalError is handled differently than (say) DataError. I tried other approaches to clearing the error (e.g. closing the connection) without avail. I suspect the web server is doing something tricky with the stack and is treating the OperationalError incorrectly and the function nesting "hides" it. Cheers.

Preventing writable modifications to Oracle database, using Python.

Currently using cx_Oracle module in Python to connect to my Oracle database. I would like to only allow the user of the program to do read only executions, like Select, and NOT INSERT/DELETE queries.
Is there something I can do to the connection/cursor variables once I establish the connection to prevent writable queries?
I am using the Python Language.
Appreciate any help.
Thanks.
One possibility is to issue the statement "set transaction read only" as in the following code:
import cx_Oracle
conn = cx_Oracle.connect("cx_Oracle/welcome")
cursor = conn.cursor()
cursor.execute("set transaction read only")
cursor.execute("insert into c values (1, 'test')")
That will result in the following error:
ORA-01456: may not perform insert/delete/update operation inside a READ ONLY transaction
Of course you'll have to make sure that you create a Connection class that calls this statement when it is first created and after each and every commit() and rollback() call. And it can still be circumvented by calling a PL/SQL block that performs a commit or rollback.
The only other possibility that I can think of right now is to create a restricted user or role which simply doesn't have the ability to insert, update, delete, etc. and make sure the application uses that user or role. This one at least is fool proof, but a lot more effort up front!

Is there a way to see the raw SQL executed by a bulk_create on django?

I'm using Django's ORM to insert thousands of objects in a Postgre's DB. And it works fine, but sometimes one of those registers have a wrong format and the insert operation doesn't work.
I can't do this kind of insert ignoring errors so I'd like to see the SQL executed by the operation and the bulk_insert only returns a list of the objects.
When in debug-mode you could use the django.db.backends logger.
https://docs.djangoproject.com/en/1.8/topics/logging/#django-db-backends
In production I would use loggers for PostGres itself, because saving these queries from within a Django process will (probably) have major impact on your performance.

What is the proper way to do an INSERT query in Python MySQL?

I have a python script that connects to a local MySQL db. I know it is connecting correctly because I can do this and get the proper results:
cursor.execute("SELECT * FROM reel")
But when I try to do any insert statements it just does nothing. No error messages, no exceptions. Nothing shows up in the database when I check it from sqlyog. This is what my code looks like:
self.cursor.executemany("INSERT INTO reel (etime,etext) VALUES (%s,%s)", tups)
where tups is a list of tuples looking like this ('0000-00-00 00:00:00','text'). No errors show up and if I copy paste the generated SQL query into sqlyog it works. I've tried generating the query and doing cursor.execute() on it and no errors and no result either. Anyone know what I'm doing wrong?
You need to do a self.cursor.commit() after self.cursor.executemany("INSERT INTO reel (etime,etext) VALUES (%s,%s)", tups)
Starting with 1.2.0, MySQLdb disables autocommit by default, as required by the DB-API standard (PEP-249). If you are using InnoDB tables or some other type of transactional table type, you'll need to do connection.commit() before closing the connection, or else none of your changes will be written to the database.
Conversely, you can also use connection.rollback() to throw away any changes you've made since the last commit.
Important note: Some SQL statements -- specifically DDL statements like CREATE TABLE -- are non-transactional, so they can't be rolled back, and they cause pending transactions to commit.
Is a FAQ

Using SQLite in a Python program

I have created a Python module that creates and populates several SQLite tables. Now, I want to use it in a program but I don't really know how to call it properly. All the tutorials I've found are essentially "inline", i.e. they walk through using SQLite in a linear fashion rather than how to actually use it in production.
What I'm trying to do is have a method check to see if the database is already created. If so, then I can use it. If not, an exception is raised and the program will create the database. (Or use if/else statements, whichever is better).
I created a test script to see if my logic is correct but it's not working. When I create the try statement, it just creates a new database rather than checking if one already exists. The next time I run the script, I get an error that the table already exists, even if I tried catching the exception. (I haven't used try/except before but figured this is a good time to learn).
Are there any good tutorials for using SQLite operationally or any suggestions on how to code this? I've looked through the pysqlite tutorial and others I found but they don't address this.
Don't make this more complex than it needs to be. The big, independent databases have complex setup and configuration requirements. SQLite is just a file you access with SQL, it's much simpler.
Do the following.
Add a table to your database for "Components" or "Versions" or "Configuration" or "Release" or something administrative like that.
CREATE TABLE REVISION(
RELEASE_NUMBER CHAR(20)
);
In your application, connect to your database normally.
Execute a simple query against the revision table. Here's what can happen.
The query fails to execute: your database doesn't exist, so execute a series of CREATE statements to build it.
The query succeeds but returns no rows or the release number is lower than expected: your database exists, but is out of date. You need to migrate from that release to the current release. Hopefully, you have a sequence of DROP, CREATE and ALTER statements to do this.
The query succeeds, and the release number is the expected value. Do nothing more, your database is configured correctly.
AFAIK an SQLITE database is just a file.
To check if the database exists, check for file existence.
When you open a SQLITE database it will automatically create one if the file that backs it up is not in place.
If you try and open a file as a sqlite3 database that is NOT a database, you will get this:
"sqlite3.DatabaseError: file is encrypted or is not a database"
so check to see if the file exists and also make sure to try and catch the exception in case the file is not a sqlite3 database
SQLite automatically creates the database file the first time you try to use it. The SQL statements for creating tables can use IF NOT EXISTS to make the commands only take effect if the table has not been created This way you don't need to check for the database's existence beforehand: SQLite can take care of that for you.
The main thing I would still be worried about is that executing CREATE TABLE IF EXISTS for every web transaction (say) would be inefficient; you can avoid that by having the program keep an (in-memory) variable saying whether it has created the database today, so it runs the CREATE TABLE script once per run. This would still allow for you to delete the database and start over during debugging.
As #diciu pointed out, the database file will be created by sqlite3.connect.
If you want to take a special action when the file is not there, you'll have to explicitly check for existance:
import os
import sqlite3
if not os.path.exists(mydb_path):
#create new DB, create table stocks
con = sqlite3.connect(mydb_path)
con.execute('''create table stocks
(date text, trans text, symbol text, qty real, price real)''')
else:
#use existing DB
con = sqlite3.connect(mydb_path)
...
Sqlite doesn't throw an exception if you create a new database with the same name, it will just connect to it. Since sqlite is a file based database, I suggest you just check for the existence of the file.
About your second problem, to check if a table has been already created, just catch the exception. An exception "sqlite3.OperationalError: table TEST already exists" is thrown if the table already exist.
import sqlite3
import os
database_name = "newdb.db"
if not os.path.isfile(database_name):
print "the database already exist"
db_connection = sqlite3.connect(database_name)
db_cursor = db_connection.cursor()
try:
db_cursor.execute('CREATE TABLE TEST (a INTEGER);')
except sqlite3.OperationalError, msg:
print msg
Doing SQL in overall is horrible in any language I've picked up. SQLalchemy has shown to be easiest from them to use because actual query and committing with it is so clean and absent from troubles.
Here's some basic steps on actually using sqlalchemy in your app, better details can be found from the documentation.
provide table definitions and create ORM-mappings
load database
ask it to create tables from the definitions (won't do so if they exist)
create session maker (optional)
create session
After creating a session, you can commit and query from the database.
See this solution at SourceForge which covers your question in a tutorial manner, with instructive source code :
y_serial.py module :: warehouse Python objects with SQLite
"Serialization + persistance :: in a few lines of code, compress and annotate Python objects into SQLite; then later retrieve them chronologically by keywords without any SQL. Most useful "standard" module for a database to store schema-less data."
http://yserial.sourceforge.net
Yes, I was nuking out the problem. All I needed to do was check for the file and catch the IOError if it didn't exist.
Thanks for all the other answers. They may come in handy in the future.

Categories

Resources