Minimum spanning tree, minimize sum of point distances - python

I have 10^6 points in 2D. Every point has to be connected, and I should minimize the sum of those distances (between points). My algorithm is this:
Make a dict 'Visited', that marks if the point is visited.
Find the closest point to all 10^6 points.
Then sort array of 10^6 points by a distance of a closest point.
Then for loop(1000000):(all points!) if p1 is not visited, connect it to the closest point
When I sort array by distance reversed, I get a different answer.
How is this possible, and how should I optimize this?
for i in range(1000000):
x1, y1 = arr[i][0], arr[i][1]
x2, y2 = arr[i][2], arr[i][3]
if (x1,y1) not in visited:
visited[(x1,y1)] +=1
visited[(x2,y2)] +=1
xs = (x1 + x2) / 2
ys = (y1 + y2) / 2
mid_point[(xs,ys)] = [(x1,y1), (x2,y2)]
I calculate radius (half distance*half distance*PI, not so important in this case, because r*r is also linear)

Related

Intersection coordinates (lat/lon) of two circles (given the coordinates of the center and the radius) on earth

I am not that experienced in python but improving it thanks to this community! I desperately need a function which takes the input and gives the ouput below:
Input:
1- Latitude/longitude coordinates of the center of circle 1 (e.g. (50.851295, 5.667969) )
2- The radius of circle 1 in meters (e.g. 200)
3- Latitude/longitude coordinates of the center of circle 2 (e.g. (50.844101, 5.725889) )
4- The radius of circle 2 in meters (e.g. 300)
Output: Possible output examples can be;
The intersection points are (50.848295, 5.707969) and (50.849295, 5.717969)
The circles are overlapping
The circles are tangential and the intersection point is (50.847295, 5.705969)
The circles do not intersect
I have examined the similar topics in this platform, other platforms, libraries, tried to combine different solutions but couldn't succeed. Any help is much appreciated!
EDIT:
The problem is solved many thanks to Ture Pålsson who commented below and directed me to whuber's brilliant work in this link https://gis.stackexchange.com/questions/48937/calculating-intersection-of-two-circles Based on that work, I wrote the code below and as far as I tested it works. I want to share it here in case someone might find it helpful. Any feedback is appreciated.
'''
FINDING THE INTERSECTION COORDINATES (LAT/LON) OF TWO CIRCLES (GIVEN THE COORDINATES OF THE CENTER AND THE RADII)
Many thanks to Ture Pålsson who directed me to the right source, the code below is based on whuber's brilliant logic and
explanation here https://gis.stackexchange.com/questions/48937/calculating-intersection-of-two-circles
The idea is that;
1. The points in question are the mutual intersections of three spheres: a sphere centered beneath location x1 (on the
earth's surface) of a given radius, a sphere centered beneath location x2 (on the earth's surface) of a given radius, and
the earth itself, which is a sphere centered at O = (0,0,0) of a given radius.
2. The intersection of each of the first two spheres with the earth's surface is a circle, which defines two planes.
The mutual intersections of all three spheres therefore lies on the intersection of those two planes: a line.
Consequently, the problem is reduced to intersecting a line with a sphere.
Note that "Decimal" is used to have higher precision which is important if the distance between two points are a few
meters.
'''
from decimal import Decimal
from math import cos, sin, sqrt
import math
import numpy as np
def intersection(p1, r1_meter, p2, r2_meter):
# p1 = Coordinates of Point 1: latitude, longitude. This serves as the center of circle 1. Ex: (36.110174, -90.953524)
# r1_meter = Radius of circle 1 in meters
# p2 = Coordinates of Point 2: latitude, longitude. This serves as the center of circle 1. Ex: (36.110174, -90.953524)
# r2_meter = Radius of circle 2 in meters
'''
1. Convert (lat, lon) to (x,y,z) geocentric coordinates.
As usual, because we may choose units of measurement in which the earth has a unit radius
'''
x_p1 = Decimal(cos(math.radians(p1[1]))*cos(math.radians(p1[0]))) # x = cos(lon)*cos(lat)
y_p1 = Decimal(sin(math.radians(p1[1]))*cos(math.radians(p1[0]))) # y = sin(lon)*cos(lat)
z_p1 = Decimal(sin(math.radians(p1[0]))) # z = sin(lat)
x1 = (x_p1, y_p1, z_p1)
x_p2 = Decimal(cos(math.radians(p2[1]))*cos(math.radians(p2[0]))) # x = cos(lon)*cos(lat)
y_p2 = Decimal(sin(math.radians(p2[1]))*cos(math.radians(p2[0]))) # y = sin(lon)*cos(lat)
z_p2 = Decimal(sin(math.radians(p2[0]))) # z = sin(lat)
x2 = (x_p2, y_p2, z_p2)
'''
2. Convert the radii r1 and r2 (which are measured along the sphere) to angles along the sphere.
By definition, one nautical mile (NM) is 1/60 degree of arc (which is pi/180 * 1/60 = 0.0002908888 radians).
'''
r1 = Decimal(math.radians((r1_meter/1852) / 60)) # r1_meter/1852 converts meter to Nautical mile.
r2 = Decimal(math.radians((r2_meter/1852) / 60))
'''
3. The geodesic circle of radius r1 around x1 is the intersection of the earth's surface with an Euclidean sphere
of radius sin(r1) centered at cos(r1)*x1.
4. The plane determined by the intersection of the sphere of radius sin(r1) around cos(r1)*x1 and the earth's surface
is perpendicular to x1 and passes through the point cos(r1)x1, whence its equation is x.x1 = cos(r1)
(the "." represents the usual dot product); likewise for the other plane. There will be a unique point x0 on the
intersection of those two planes that is a linear combination of x1 and x2. Writing x0 = ax1 + b*x2 the two planar
equations are;
cos(r1) = x.x1 = (a*x1 + b*x2).x1 = a + b*(x2.x1)
cos(r2) = x.x2 = (a*x1 + b*x2).x2 = a*(x1.x2) + b
Using the fact that x2.x1 = x1.x2, which I shall write as q, the solution (if it exists) is given by
a = (cos(r1) - cos(r2)*q) / (1 - q^2),
b = (cos(r2) - cos(r1)*q) / (1 - q^2).
'''
q = Decimal(np.dot(x1, x2))
if q**2 != 1 :
a = (Decimal(cos(r1)) - Decimal(cos(r2))*q) / (1 - q**2)
b = (Decimal(cos(r2)) - Decimal(cos(r1))*q) / (1 - q**2)
'''
5. Now all other points on the line of intersection of the two planes differ from x0 by some multiple of a vector
n which is mutually perpendicular to both planes. The cross product n = x1~Cross~x2 does the job provided n is
nonzero: once again, this means that x1 and x2 are neither coincident nor diametrically opposite. (We need to
take care to compute the cross product with high precision, because it involves subtractions with a lot of
cancellation when x1 and x2 are close to each other.)
'''
n = np.cross(x1, x2)
'''
6. Therefore, we seek up to two points of the form x0 + t*n which lie on the earth's surface: that is, their length
equals 1. Equivalently, their squared length is 1:
1 = squared length = (x0 + t*n).(x0 + t*n) = x0.x0 + 2t*x0.n + t^2*n.n = x0.x0 + t^2*n.n
'''
x0_1 = [a*f for f in x1]
x0_2 = [b*f for f in x2]
x0 = [sum(f) for f in zip(x0_1, x0_2)]
'''
The term with x0.n disappears because x0 (being a linear combination of x1 and x2) is perpendicular to n.
The two solutions easily are t = sqrt((1 - x0.x0)/n.n) and its negative. Once again high precision
is called for, because when x1 and x2 are close, x0.x0 is very close to 1, leading to some loss of
floating point precision.
'''
if (np.dot(x0, x0) <= 1) & (np.dot(n,n) != 0): # This is to secure that (1 - np.dot(x0, x0)) / np.dot(n,n) > 0
t = Decimal(sqrt((1 - np.dot(x0, x0)) / np.dot(n,n)))
t1 = t
t2 = -t
i1 = x0 + t1*n
i2 = x0 + t2*n
'''
7. Finally, we may convert these solutions back to (lat, lon) by converting geocentric (x,y,z) to geographic
coordinates. For the longitude, use the generalized arctangent returning values in the range -180 to 180
degrees (in computing applications, this function takes both x and y as arguments rather than just the
ratio y/x; it is sometimes called "ATan2").
'''
i1_lat = math.degrees( math.asin(i1[2]))
i1_lon = math.degrees( math.atan2(i1[1], i1[0] ) )
ip1 = (i1_lat, i1_lon)
i2_lat = math.degrees( math.asin(i2[2]))
i2_lon = math.degrees( math.atan2(i2[1], i2[0] ) )
ip2 = (i2_lat, i2_lon)
return [ip1, ip2]
elif (np.dot(n,n) == 0):
return("The centers of the circles can be neither the same point nor antipodal points.")
else:
return("The circles do not intersect")
else:
return("The centers of the circles can be neither the same point nor antipodal points.")
'''
Example: the output of below is [(36.989311051533505, -88.15142628069133), (38.2383796094578, -92.39048549120287)]
intersection_points = intersection((37.673442, -90.234036), 107.5*1852, (36.109997, -90.953669), 145*1852)
print(intersection_points)
'''
Depending on the precision you need, you may or may not consider the Earth as a sphere. In the second case, calculations become more complex.
The best option for precise measurements when the radius is small (as in your example) is to use a projection (UTM for example) and then apply the common flat euclidean calculations.
Let's first copy the flat circle intersection function from https://stackoverflow.com/a/55817881/2148416:
def circle_intersection(x0, y0, r0, x1, y1, r1):
d = math.sqrt((x1 - x0) ** 2 + (y1 - y0) ** 2)
if d > r0 + r1: # non intersecting
return None
if d < abs(r0 - r1): # one circle within other
return None
if d == 0 and r0 == r1: # coincident circles
return None
a = (r0 ** 2 - r1 ** 2 + d ** 2) / (2 * d)
h = math.sqrt(r0 ** 2 - a ** 2)
x2 = x0 + a * (x1 - x0) / d
y2 = y0 + a * (y1 - y0) / d
x3 = x2 + h * (y1 - y0) / d
y3 = y2 - h * (x1 - x0) / d
x4 = x2 - h * (y1 - y0) / d
y4 = y2 + h * (x1 - x0) / d
return (x3, y3), (x4, y4)
The precise calculation for a small radius (up to a few kilometers) can be done in UTM coordinates with the help of the utm library. It handles all the complications regarding the fact the the Earth is more an ellipsoid than a sphere:
import utm
def geo_circle_intersection(latlon0, radius0, latlon1, radius1):
# Convert lat/lon to UTM
x0, y0, zone, letter = utm.from_latlon(latlon0[0], latlon0[1])
x1, y1, _, _ = utm.from_latlon(latlon1[0], latlon1 [1], force_zone_number=zone)
# Calculate intersections in UTM coordinates
a_utm, b_utm = circle_intersection(x0, y0, r0, x1, y1, r1)
# Convert intersections from UTM back to lat/lon
a = utm.to_latlon(a_utm[0], a_utm[1], zone, letter)
b = utm.to_latlon(b_utm[0], b_utm[1], zone, letter)
return a, b
Using your example (with slightly larger radii):
>>> p0 = 50.851295, 5.667969
>>> r0 = 2000
>>> p1 = 50.844101, 5.725889
>>> r1 = 3000
>>> a, b = geo_circle_intersection(p0, r0, p1, r1)
>>> print(a)
(50.836848562566004, 5.684869539768468)
>>> print(b)
(50.860635308778285, 5.692236858407678)

Finding the distance between two polygons in numpy

I have two polygons, P and Q, where the exterior linear ring of a polygon is defined by two closed sets of points, stored as numpy arrays, connected in a counterclockwise direction. P and Q are in the following format:
P['x_coords'] = [299398.56 299402.16 299410.25 299419.7 299434.97 299443.75 299454.1 299465.3 299477. 299488.25 299496.8 299499.5 299501.28 299504. 299511.62 299520.62 299527.8 299530.06 299530.06 299525.12 299520.2 299513.88 299508.5 299500.84 299487.34 299474.78 299458.6 299444.66 299429.8 299415.4 299404.84 299399.47 299398.56 299398.56]
P['y_coords'] = [822975.2 822989.56 823001.25 823005.3 823006.7 823005.06 823001.06 822993.4 822977.2 822961. 822943.94 822933.6 822925.06 822919.7 822916.94 822912.94 822906.6 822897.6 822886.8 822869.75 822860.75 822855.8 822855.4 822857.2 822863.44 822866.6 822870.6 822876.94 822886.8 822903. 822920.3 822937.44 822954.94 822975.2]
Q['x_coords'] = [292316.94 292317.94 292319.44 292322.47 292327.47 292337.72 292345.75 292350. 292352.75 292353.5 292352.25 292348.75 292345.75 292342.5 292338.97 292335.97 292333.22 292331.22 292329.72 292324.72 292319.44 292317.2 292316.2 292316.94]
Q['y_coords'] = [663781. 663788.25 663794. 663798.06 663800.06 663799.3 663796.56 663792.75 663788.5 663782. 663773.25 663766. 663762. 663758.25 663756.5 663756.25 663757.5 663761. 663763.75 663767.5 663769.5 663772.25 663777.5 663781. ]
## SIMPLIFIED AND FORMATTED FOR EASY TESTING:
import numpy as np
px_coords = np.array([299398,299402,299410.25,299419.7,299398])
py_coords = np.array([822975.2,822920.3,822937.44,822954.94,822975.2])
qx_coords = np.array([292316,292331.22,292329.72,292324.72,292319.44,292317.2,292316])
qy_coords = np.array([663781,663788.25,663794,663798.06,663800.06,663799.3,663781])
The exterior ring of P is formed by joining P['x_coords'][0], P['y_coords'][0] -> P['x_coords'][1], P['y_coords'][1] etc. The last coordinate of each array is the same as the first, indicating that the shape is topologically closed.
Is it possible to calculate a simple minimum distance between the exterior rings of P and Q geometrically using numpy? I have searched high and low on SO without finding anything explicit, so I suspect this may be a drastic oversimplification of a very complex problem. I am aware that distance calculations can be done with out-of-the-box spatial libraries such as GDAL or Shapely, but I'm keen to understand how these work by building something from scratch in numpy.
Some things I have considered or tried:
Calculate the distance between each point in both arrays. This doesn't work as the closest point between P and Q can be an edge-vertex pair. Using the convex hull of each shape, calculated using scipy.spatial has the same problem.
An inefficient brute force approach calculating the distance between every pair of points, and every combination of edge-point pairs
Is there a better way to go about this problem?
There are many variations on a k-d tree for storing objects with extent, like the edges of your polygons. The approach with which I am most familiar (but have no link for) involves associating an axis-aligned bounding box with each node; the leaves correspond to the objects, and an internal node’s box is the smallest enclosing both of its children’s (which in general overlap). The usual median-cut approach is applied to the midpoints of the object’s boxes (for line segments, this is their midpoint).
Having built these for each polygon, the following dual recursion finds the closest approach:
def closest(k1,k2,true_dist):
return _closest(k1,0,k2,0,true_dist,float("inf"))
def _closest(k1,i1,k2,i2,true_dist,lim):
b1=k1.bbox[i1]
b2=k2.bbox[i2]
# Call leaves their own single children:
cc1=k1.child[i1] or (i1,)
cc2=k2.child[i2] or (i2,)
if len(cc1)==1 and len(cc2)==1:
return min(lim,true_dist(i1,i2))
# Consider 2 or 4 pairs of children, possibly-closest first:
for md,c1,c2 in sorted((min_dist(k1.bbox[c1],k2.bbox[c2]),c1,c2)
for c1 in cc1 for c2 in cc2):
if md>=lim: break
lim=min(lim,_closest(k1,c1,k2,c2,true_dist,lim)
return lim
Notes:
The closest approach true_dist between two non-intersecting line segments must involve at least one endpoint.
The distance between a point and a segment can be greater than that between the point and the line containing the segment.
No point-point checks are needed: such a pair will be found (four times) via the adjacent edges.
The bounding-box arguments to min_dist may be overlapping, in which case it must return 0.
Thanks to Davis Herring for his answer - his is not the solution I ended up using (because I'm not very familiar with recursion) but I used the principals he outlined to develop a solution. I am planning on building an index into this solution, as suggested by Davis, to help with very large polygons.
I ended using a brute force approach that compares the distance between each edge of both polygons against each other, calculates the distance, and keeps track the minimum distance. I adapted the answers provided in this question: Shortest distance between two line segments. This method is very loop heavy and was running very slowly, so I adapted it to run in cython to improve efficiency.
pure python
shape a edges: 33
shape b edges: 15
total loops: 1000
total time = 6.889256715774536
average time per loop = 0.006896152868643179
max time per loop = 0.022176027297973633
min time per loop = 0.0
cython loop
shape a edges: 33
shape b edges: 15
total loops: 1000
total time = 0.046829938888549805
average time per loop = 4.687681570425406e-05
max time per loop = 0.015621423721313477
min time per loop = 0.0
I have attached the pure python version of the code below for clarity, and can provide the cython one if needed.
import numpy as np
import time
import math
def segments_distance(x11, y11, x12, y12, x21, y21, x22, y22):
if segments_intersect(x11, y11, x12, y12, x21, y21, x22, y22): return 0
distances = []
distances.append(point_segment_distance(x11, y11, x21, y21, x22, y22))
distances.append(point_segment_distance(x12, y12, x21, y21, x22, y22))
distances.append(point_segment_distance(x21, y21, x11, y11, x12, y12))
distances.append(point_segment_distance(x22, y22, x11, y11, x12, y12))
return min(distances)
def segments_intersect(x11, y11, x12, y12, x21, y21, x22, y22):
dx1 = x12 - x11
dy1 = y12 - y11
dx2 = x22 - x21
dy2 = y22 - y21
delta = dx2 * dy1 - dy2 * dx1
if delta == 0: return False # parallel segments
s = (dx1 * (y21 - y11) + dy1 * (x11 - x21)) / delta
t = (dx2 * (y11 - y21) + dy2 * (x21 - x11)) / (-delta)
return (0 <= s <= 1) and (0 <= t <= 1)
def point_segment_distance(px, py, x1, y1, x2, y2):
dx = x2 - x1
dy = y2 - y1
if dx == dy == 0: # the segment's just a point
return math.hypot(px - x1, py - y1)
# Calculate the t that minimizes the distance.
t = ((px - x1) * dx + (py - y1) * dy) / (dx * dx + dy * dy)
# See if this represents one of the segment's
# end points or a point in the middle.
if t < 0:
dx = px - x1
dy = py - y1
elif t > 1:
dx = px - x2
dy = py - y2
else:
near_x = x1 + t * dx
near_y = y1 + t * dy
dx = px - near_x
dy = py - near_y
return math.hypot(dx, dy)
px_coords=np.array([299398.56,299402.16,299410.25,299419.7,299434.97,299443.75,299454.1,299465.3,299477.,299488.25,299496.8,299499.5,299501.28,299504.,299511.62,299520.62,299527.8,299530.06,299530.06,299525.12,299520.2,299513.88,299508.5,299500.84,299487.34,299474.78,299458.6,299444.66,299429.8,299415.4,299404.84,299399.47,299398.56,299398.56])
py_coords=np.array([822975.2,822989.56,823001.25,823005.3,823006.7,823005.06,823001.06,822993.4,822977.2,822961.,822943.94,822933.6,822925.06,822919.7,822916.94,822912.94,822906.6,822897.6,822886.8,822869.75,822860.75,822855.8,822855.4,822857.2,822863.44,822866.6,822870.6,822876.94,822886.8,822903.,822920.3,822937.44,822954.94,822975.2])
qx_coords=np.array([384072.1,384073.2,384078.9,384085.7,384092.47,384095.3,384097.12,384097.12,384093.9,384088.9,384082.47,384078.9,384076.03,384074.97,384073.53,384072.1])
qy_coords=np.array([780996.8,781001.1,781003.6,781003.6,780998.25,780993.25,780987.9,780981.8,780977.5,780974.7,780974.7,780977.2,780982.2,780988.25,780992.5,780996.8])
px_edges = np.stack((px_coords, np.roll(px_coords, -1)),1)
py_edges = np.stack((py_coords, np.roll(py_coords, -1)),1)
p_edges = np.stack((px_edges, py_edges), axis=-1)[:-1]
qx_edges = np.stack((qx_coords, np.roll(qx_coords, -1)),1)
qy_edges = np.stack((qy_coords, np.roll(qy_coords, -1)),1)
q_edges = np.stack((qx_edges, qy_edges), axis=-1)[:-1]
timings = []
for i in range(1,1000):
start = time.time()
edge_distances = [segments_distance(p_edges[n][0][0],p_edges[n][0][1],p_edges[n][1][0],p_edges[n][1][1],q_edges[m][0][0],q_edges[m][0][1],q_edges[m][1][0],q_edges[m][1][1]) for m in range(0,len(q_edges)) for n in range(0,len(p_edges))]
end = time.time() - start
timings.append(end)
print(f'shape a edges: {len(px_coords)}')
print(f'shape b edges: {len(qy_coords)}')
print(f'total loops: {i+1}')
print(f'total time = {sum(timings)}')
print(f'average time per loop = {sum(timings)/len(timings)}')
print(f'max time per loop = {max(timings)}')
print(f'min time per loop = {min(timings)}')

What is an efficient way to check if any point of a contour is intersected by a line?

Note: While this question Finding intersection between straight line and contour addresses a similar problem, my preference would be to not pull in another dependency if possible.
I have an image where I have detected multiple lines and multiple contours. As an example, the image below has three lines detected and two contours detected. My task is to find which contours have a line intersecting them. In this case, only one contour has a line intersecting it.
The collections that I have are below.
lines = cv2.HoughLines(img,1,np.pi/180, 200)
contours, _ = cv2.findContours(edges,cv2.RETR_TREE,cv2.CHAIN_APPROX_SIMPLE)
My original thought process was to calculate the distance of the centroid coordinates to the line, but there might be edge cases where there are very large contours, so that would be unreliable since the centroid would be too far away from the line.
Maybe find all possible coordinates in the contour, loop over each point and check if the distance of that point to the line is zero?
I wrote some code to calculate the distance between a point and a line:
def shortest_distance_to_line(point, line):
x, y = point
rho, theta = line
a = np.cos(theta)
b = np.sin(theta)
x0 = a*rho
y0 = b*rho
x1 = int(x0 + 10000*(-b))
y1 = int(y0 + 10000*(a))
x2 = int(x0 - 10000*(-b))
y2 = int(y0 - 10000*(a))
if theta == 0: # vertical line
return abs(x - x1)
else:
c = (y2 - y1) / (x2 - x1)
return abs(a*x + b*y + c) / math.sqrt(a**2 + b**2)
What is an efficient way to detect contours that have lines intersecting them?
If looping over each of the points inside of each contours is an efficient approach, how do I generate all points for a contour?
The equation of a line in the plane is of the shape $ax+by+c=0$, where (x,y) is a point in the plane. The line separates the plane in two half-planes, and if we omit this boundary line, the (open) half planes are given by the equations:
ax + by + c > 0
ax + by + c < 0
I assume the domains to be crossed to be connected.
Then i would start a Monte-Carlo random generation of points, and record the sign of the function (x,y) -> ax + by + c each time. (Some error can be implemented.) After a first detection of both signs we have an intersection. Else, after a number of trials we stop and consider there is no intersection.
If the "domains" have only a few points, we loop of course, no Monte-Carlo is needed. (And we can restrict to boundary points, if we have them already.)

Computing the distance to a convex hull

I am using the ConvexHull class of scipy to construct a convex hull for a set of points. I am interested in a way to compute the minimum distance of a new point P from the convex hull.
With the help of the internet and a little tweaking by myself I came up with this formula to compute the distance of a point P or a set of points points to the convex hull facets:
np.max(np.dot(self.equations[:, :-1], points.T).T + self.equations[:, -1], axis=-1)
For a convex hull in 2D the equation above will result in the following plot:
As you can see the result is pretty good and correct for points within the convex hull (The distance here is negative and would need to be multiplied with -1). It is also correct for points that are closest to a facet but incorrect for points that are closest to a vertex of the convex hull. (I marked these regions with the dashed lines) For these points the correct minimum distance would be the minimum distance to the convex hull vertices.
How can I distinguish between points that are closest to a facet or closest to a vertex to correctly compute the minimum distance to the convex hull for a point P or a set of points points in an n-Dimensional space (At least 3D)?
if the points of the convex hull are given as a NX2 array and the point is given as p=[x,y]
import math
#from http://stackoverflow.com/questions/849211/shortest-distance-between-a-point-and-a-line-segment
def dist(x1,y1, x2,y2, x3,y3): # x3,y3 is the point
px = x2-x1
py = y2-y1
something = px*px + py*py
u = ((x3 - x1) * px + (y3 - y1) * py) / float(something)
if u > 1:
u = 1
elif u < 0:
u = 0
x = x1 + u * px
y = y1 + u * py
dx = x - x3
dy = y - y3
# Note: If the actual distance does not matter,
# if you only want to compare what this function
# returns to other results of this function, you
# can just return the squared distance instead
# (i.e. remove the sqrt) to gain a little performance
dist = math.sqrt(dx*dx + dy*dy)
return dist
dists=[]
for i in range(len(points)-1):
dists.append(dist(points[i][0],points[i][1],points[i+1][0],points[i+1][1],p[0],p[1]))
dist = min(dists)

Identify 90'degree projection between two points

In python I have two points, A and B in 2D.
I have a user who is traveling between these 2 points (now a vector?).
These points are arbitrarily far apart.
I want to calculate 2 projections(?) at half way between these 2 points 100m away from the original line, one projection at 90 degrees and the other at 180 degrees.
In the above image, I have points A and B, while I want to calculate points C and D.
Can somebody help me with this math calculation?
Consider the direction vector from A to B:
ab = (x2 - x, y2 - y)
Then, the vector that is orthogonal to this line is:
orth = (y - y2, x2 - x)
The length of this vector (and of the direction vector) is:
l = sqrt((x2-x)^2 + (y2-y)^2)
The midpoint on the line is
m = 1/2 * (x + x2, y + y2)
Finally, the two points C and D are:
C/D = m +- orth * 100 / l

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