Get data as dataframe from Look through API sdk package in python - python

I have the following code to get a look from Looker through an API. I stored the api in a .ini. All of that works, but now I want to get the data from this look as Dataframe in python, so that I can use the data for further analysis. How can i do that? I used this code, but that only saves it to png. I can't find a way to create a dataframe from this, as I want the data itself and not just the outcome image.
import sys
import textwrap
import time
import looker_sdk
from looker_sdk import models
sdk = looker_sdk.init40("/Name.ini")
def get_look(title: str) -> models.Look:
title = title.lower()
look = next(iter(sdk.search_looks(title=title)), None)
if not look:
raise Exception(f"look '{title}' was not found")
return look
def download_look(look: models.Look, result_format: str, width: int, height: int):
"""Download specified look as png/jpg"""
id = int(look.id)
task = sdk.create_look_render_task(id, result_format, width, height,)
if not (task and task.id):
raise sdk.RenderTaskError(
f"Could not create a render task for '{look.title}'"
)
# poll the render task until it completes
elapsed = 0.0
delay = 0.5 # wait .5 seconds
while True:
poll = sdk.render_task(task.id)
if poll.status == "failure":
print(poll)
raise Exception(f"Render failed for '{look.title}'")
elif poll.status == "success":
break
time.sleep(delay)
elapsed += delay
print(f"Render task completed in {elapsed} seconds")
result = sdk.render_task_results(task.id)
filename = f"{look.title}.{result_format}"
with open(filename, "wb") as f:
f.write(result)
print(f"Look saved to '{filename}'")
look_title = sys.argv[1] if len(sys.argv) > 1 else "Name"
image_width = int(sys.argv[2]) if len(sys.argv) > 2 else 545
image_height = int(sys.argv[3]) if len(sys.argv) > 3 else 842
image_format = sys.argv[4] if len(sys.argv) > 4 else "png"
if not look_title:
raise Exception(
textwrap.dedent(
"""
Please provide: <lookTitle> [<img_width>] [<img_height>] [<img_format>]
img_width defaults to 545
img_height defaults to 842
img_format defaults to 'png'"""
)
)
look = get_look(look_title)
#Dataframe storage
download_look(look, image_format, image_width, image_height)

The SDK function you are using (create_look_render_task), which is described here only allows you to download in either pdf, png, or jpg.
If you want to get the data from a Look into a dataframe then you may want to look into using the run_look function instead described here. When you use run_look you can change the result_format to CSV and then write your own code to convert to a dataframe.

Related

How to run multiple Azure Functions in parallel which scroll through Elasticsearch?

I have a setup where I need to extract data from Elasticsearch and store it on an Azure Blob. Now to get the data I am using Elasticsearch's _search and _scroll API. The indexes are pretty well designed and are formatted something like game1.*, game2.*, game3.* etc.
I've created a worker.py file which I stored in a folder called shared_code as Microsoft suggests and I have several Timer Trigger Functions which import and call worker.py. Due to the way ES was setup on our side I had to create a VNET and a static Outbound IP address which we've then whitelisted on ES. Conversely, the data is only available to be extracted from ES only on port 9200. So I've created an Azure Function App which has the connection setup and I am trying to create multiple Functions (game1-worker, game2-worker, game3-worker) to pull the data from ES running in parallel on minute 5. I've noticed if I add the FUNCTIONS_WORKER_PROCESS_COUNT = 1 setting then the functions will wait until the first triggered one finishes its task and then the second one triggers. If I don't add this app setting or increase the number, then once a function stopped because it finished working, it will try to start it again and then I get a OSError: [WinError 10048] Only one usage of each socket address (protocol/network address/port) is normally permitted error. Is there a way I can make these run in parallel but not have the mentioned error?
Here is the code for the worker.py:
#!/usr/bin/env python
# coding: utf-8
# # Elasticsearch to Azure Microservice
import json, datetime, gzip, importlib, os, re, logging
from elasticsearch import Elasticsearch
import azure.storage.blob as azsb
import azure.identity as azi
import os
import tempfile
def batch(game_name, env='prod'):
# #### Global Variables
env = env.lower()
connection_string = os.getenv('conn_storage')
lowerFormat = game_name.lower().replace(" ","_")
azFormat = re.sub(r'[^0-9a-zA-Z]+', '-', game_name).lower()
storageContainerName = azFormat
stateStorageContainerName = "azure-webjobs-state"
minutesOffset = 5
tempFilePath = tempfile.gettempdir()
curFileName = f"{lowerFormat}_cursor.py"
curTempFilePath = os.path.join(tempFilePath,curFileName)
curBlobFilePath = f"cursors/{curFileName}"
esUrl = os.getenv('esUrl')
# #### Connections
es = Elasticsearch(
esUrl,
port=9200,
timeout=300)
def uploadJsonGzipBlob(filePathAndName, jsonBody):
blob = azsb.BlobClient.from_connection_string(
conn_str=connection_string,
container_name=storageContainerName,
blob_name=filePathAndName
)
blob.upload_blob(gzip.compress(bytes(json.dumps(jsonBody), encoding='utf-8')))
def getAndLoadCursor(filePathAndName):
# Get cursor from blob
blob = azsb.BlobClient.from_connection_string(
conn_str=os.getenv('AzureWebJobsStorage'),
container_name=stateStorageContainerName,
blob_name=filePathAndName
)
# Stream it to Temp file
with open(curTempFilePath, "wb") as f:
data = blob.download_blob()
data.readinto(f)
# Load it by path
spec = importlib.util.spec_from_file_location("cursor", curTempFilePath)
cur = importlib.util.module_from_spec(spec)
spec.loader.exec_module(cur)
return cur
def writeCursor(filePathAndName, body):
blob = azsb.BlobClient.from_connection_string(
conn_str=os.getenv('AzureWebJobsStorage'),
container_name=stateStorageContainerName,
blob_name=filePathAndName
)
blob.upload_blob(body, overwrite=True)
# Parameter and state settings
if os.getenv(f"{lowerFormat}_maxSizeMB") is None:
maxSizeMB = 10 # Default to 10 MB
else:
maxSizeMB = int(os.getenv(f"{lowerFormat}_maxSizeMB"))
if os.getenv(f"{lowerFormat}_maxProcessTimeSeconds") is None:
maxProcessTimeSeconds = 300 # Default to 300 seconds
else:
maxProcessTimeSeconds = int(os.getenv(f"{lowerFormat}_maxProcessTimeSeconds"))
try:
cur = getAndLoadCursor(curBlobFilePath)
except Exception as e:
dtStr = f"{datetime.datetime.utcnow():%Y/%m/%d %H:%M:00}"
writeCursor(curBlobFilePath, f"# Please use format YYYY/MM/DD HH24:MI:SS\nlastPolled = '{dtStr}'")
logging.info(f"No cursor file. Generated {curFileName} file with date {dtStr}")
return 0
# # Scrolling and Batching Engine
lastRowDateOffset = cur.lastPolled
nrFilesThisInstance = 0
while 1:
# Offset the current time by -5 minutes to account for the 2-3 min delay in Elasticsearch
initTime = datetime.datetime.utcnow()
## Filter lt (less than) endDate to avoid infinite loops.
## Filter lt manually when compiling historical based on
endDate = initTime-datetime.timedelta(minutes=minutesOffset)
endDate = f"{endDate:%Y/%m/%d %H:%M:%S}"
doc = {
"query": {
"range": {
"baseCtx.date": {
"gt": lastRowDateOffset,
"lt": endDate
}
}
}
}
Index = lowerFormat + ".*"
if env == 'dev': Index = 'dev.' + Index
if nrFilesThisInstance == 0:
page = es.search(
index = Index,
sort = "baseCtx.date:asc",
scroll = "2m",
size = 10000,
body = doc
)
else:
page = es.scroll(scroll_id = sid, scroll = "10m")
pageSize = len(page["hits"]["hits"])
data = page["hits"]["hits"]
sid = page["_scroll_id"]
totalSize = page["hits"]["total"]
print(f"Total Size: {totalSize}")
cnt = 0
# totalSize might be flawed as it returns at times an integer > 0 but array is empty
# To overcome this, I've added the below check for the array size instead
if pageSize == 0: break
while 1:
cnt += 1
page = es.scroll(scroll_id = sid, scroll = "10m")
pageSize = len(page["hits"]["hits"])
sid = page["_scroll_id"]
data += page["hits"]["hits"]
sizeMB = len(gzip.compress(bytes(json.dumps(data), encoding='utf-8'))) / (1024**2)
loopTime = datetime.datetime.utcnow()
processTimeSeconds = (loopTime-initTime).seconds
print(f"{cnt} Results pulled: {pageSize} -- Cumulative Results: {len(data)} -- Gzip Size MB: {sizeMB} -- processTimeSeconds: {processTimeSeconds} -- pageSize: {pageSize} -- startDate: {lastRowDateOffset} -- endDate: {endDate}")
if sizeMB > maxSizeMB: break
if processTimeSeconds > maxProcessTimeSeconds: break
if pageSize < 10000: break
lastRowDateOffset = max([x['_source']['baseCtx']['date'] for x in data])
lastRowDateOffsetDT = datetime.datetime.strptime(lastRowDateOffset, '%Y/%m/%d %H:%M:%S')
outFile = f"elasticsearch/live/{lastRowDateOffsetDT:%Y/%m/%d/%H}/{lowerFormat}_live_{lastRowDateOffsetDT:%Y%m%d%H%M%S}.json.gz"
uploadJsonGzipBlob(outFile, data)
writeCursor(curBlobFilePath, f"# Please use format YYYY/MM/DD HH24:MI:SS\nlastPolled = '{lastRowDateOffset}'")
nrFilesThisInstance += 1
logging.info(f"File compiled: {outFile} -- {sizeMB} MB\n")
# If the while loop ran for more than maxProcessTimeSeconds then end it
if processTimeSeconds > maxProcessTimeSeconds: break
if pageSize < 10000: break
logging.info(f"Closing Connection to {esUrl}")
es.close()
return 0
And these are 2 of the timing triggers I am calling:
game1-worker
import logging
import datetime
import azure.functions as func
#from shared_code import worker
import importlib
def main(mytimer: func.TimerRequest) -> None:
utc_timestamp = datetime.datetime.utcnow().replace(
tzinfo=datetime.timezone.utc).isoformat()
if mytimer.past_due:
logging.info('The timer is past due!')
# Load a new instance of worker.py
spec = importlib.util.spec_from_file_location("worker", "shared_code/worker.py")
worker = importlib.util.module_from_spec(spec)
spec.loader.exec_module(worker)
worker.batch('game1name')
logging.info('Python timer trigger function ran at %s', utc_timestamp)
game2-worker
import logging
import datetime
import azure.functions as func
#from shared_code import worker
import importlib
def main(mytimer: func.TimerRequest) -> None:
utc_timestamp = datetime.datetime.utcnow().replace(
tzinfo=datetime.timezone.utc).isoformat()
if mytimer.past_due:
logging.info('The timer is past due!')
# Load a new instance of worker.py
spec = importlib.util.spec_from_file_location("worker", "shared_code/worker.py")
worker = importlib.util.module_from_spec(spec)
spec.loader.exec_module(worker)
worker.batch('game2name')
logging.info('Python timer trigger function ran at %s', utc_timestamp)
TL;DR
Based on what you described, multiple worker-processes share underlying runtime's resources (sockets).
For your usecase you just need to leave FUNCTIONS_WORKER_PROCESS_COUNT at 1. Default value is supposed to be 1, so not specifying it should mean the same as setting it to 1.
You need to understand how Azure Functions scale. It is very unnatural/confusing.
Assumes Consumption Plan.
Coding: You write Functions. Say F1 an F2. How you organize is up to you.
Provisioning:
You create a Function App.
You deploy F1 and F2 to this App.
You start the App. (not function).
Runtime:
At start
Azure spawns one Function Host. Think of this as a container/OS.
Inside the Host, one worker-process is created. This worker-process will host one instance of App.
If you change FUNCTIONS_WORKER_PROCESS_COUNT to say 10 then Host will spawn 10 processes and run your App inside each of them.
When a Function is triggered (function could be triggered due to timer, or REST calls or message in Q, ...)
Each worker-process is capable of servicing one request at a time. Be it a request for F1 or F2. One at a time.
Each Host is capable servicing one request per worker-process in it.
If backlog of requests grows, then Azure load balancer would trigger scale-out and create new Function Hosts.
Based on limited info, it seems like bad design to create 3 functions. You could instead create a single timer-triggered function, which sends out 3 messages to a Q (Storage Q should be more than plenty for such minuscule traffic), which in turn triggers your actual Function/implementation (which is storage Q triggered Function). Message would be something like {"game_name": "game1"}.

Custom audio input bytes to azure cognitive speech translation service in Python

I am in need to able to translate custom audio bytes which I can get from any source and translate the voice into the language I need (currently Hindi). I have been trying to pass custom audio bytes using following code in Python:
import azure.cognitiveservices.speech as speechsdk
from azure.cognitiveservices.speech.audio import AudioStreamFormat, PullAudioInputStream, PullAudioInputStreamCallback, AudioConfig, PushAudioInputStream
speech_key, service_region = "key", "region"
channels = 1
bitsPerSample = 16
samplesPerSecond = 16000
audioFormat = AudioStreamFormat(samplesPerSecond, bitsPerSample, channels)
class CustomPullAudioInputStreamCallback(PullAudioInputStreamCallback):
def __init__(self):
return super(CustomPullAudioInputStreamCallback, self).__init__()
def read(self, file_bytes):
print (len(file_bytes))
return len(file_bytes)
def close(self):
return super(CustomPullAudioInputStreamCallback, self).close()
class CustomPushAudioInputStream(PushAudioInputStream):
def write(self, file_bytes):
print (type(file_bytes))
return super(CustomPushAudioInputStream, self).write(file_bytes)
def close():
return super(CustomPushAudioInputStream, self).close()
translation_config = speechsdk.translation.SpeechTranslationConfig(subscription=speech_key, region=service_region)
fromLanguage = 'en-US'
toLanguage = 'hi'
translation_config.speech_recognition_language = fromLanguage
translation_config.add_target_language(toLanguage)
translation_config.voice_name = "hi-IN-Kalpana-Apollo"
pull_audio_input_stream_callback = CustomPullAudioInputStreamCallback()
# pull_audio_input_stream = PullAudioInputStream(pull_audio_input_stream_callback, audioFormat)
# custom_pull_audio_input_stream = CustomPushAudioInputStream(audioFormat)
audio_config = AudioConfig(use_default_microphone=False, stream=pull_audio_input_stream_callback)
recognizer = speechsdk.translation.TranslationRecognizer(translation_config=translation_config,
audio_config=audio_config)
def synthesis_callback(evt):
size = len(evt.result.audio)
print('AUDIO SYNTHESIZED: {} byte(s) {}'.format(size, '(COMPLETED)' if size == 0 else ''))
if size > 0:
t_sound_file = open("translated_output.wav", "wb+")
t_sound_file.write(evt.result.audio)
t_sound_file.close()
recognizer.stop_continuous_recognition_async()
def recognized_complete(evt):
if evt.result.reason == speechsdk.ResultReason.TranslatedSpeech:
print("RECOGNIZED '{}': {}".format(fromLanguage, result.text))
print("TRANSLATED into {}: {}".format(toLanguage, result.translations['hi']))
elif evt.result.reason == speechsdk.ResultReason.RecognizedSpeech:
print("RECOGNIZED: {} (text could not be translated)".format(result.text))
elif evt.result.reason == speechsdk.ResultReason.NoMatch:
print("NOMATCH: Speech could not be recognized: {}".format(result.no_match_details))
elif evt.reason == speechsdk.ResultReason.Canceled:
print("CANCELED: Reason={}".format(result.cancellation_details.reason))
if result.cancellation_details.reason == speechsdk.CancellationReason.Error:
print("CANCELED: ErrorDetails={}".format(result.cancellation_details.error_details))
def receiving_bytes(audio_bytes):
# audio_bytes contain bytes of audio to be translated
recognizer.synthesizing.connect(synthesis_callback)
recognizer.recognized.connect(recognized_complete)
pull_audio_input_stream_callback.read(audio_bytes)
recognizer.start_continuous_recognition_async()
receiving_bytes(audio_bytes)
Output:
Error: AttributeError: 'PullAudioInputStreamCallback' object has no attribute '_impl'
Packages and their versions:
Python 3.6.3
azure-cognitiveservices-speech 1.11.0
File Translation can be successfully performed but I do not want to save files for each chunk of bytes I receive.
Can you me pass custom audio bytes to the Azure Speech Translation Service and get the result in Python? If yes then how?
I got the solution to the problem by myself. I think it works with PullAudioInputStream too. But it worked for me using PushAudioInputStream. You don't need to create custom classes it would work like the following:
import azure.cognitiveservices.speech as speechsdk
from azure.cognitiveservices.speech.audio import AudioStreamFormat, PullAudioInputStream, PullAudioInputStreamCallback, AudioConfig, PushAudioInputStream
from threading import Thread, Event
speech_key, service_region = "key", "region"
channels = 1
bitsPerSample = 16
samplesPerSecond = 16000
audioFormat = AudioStreamFormat(samplesPerSecond, bitsPerSample, channels)
translation_config = speechsdk.translation.SpeechTranslationConfig(subscription=speech_key, region=service_region)
fromLanguage = 'en-US'
toLanguage = 'hi'
translation_config.speech_recognition_language = fromLanguage
translation_config.add_target_language(toLanguage)
translation_config.voice_name = "hi-IN-Kalpana-Apollo"
# Remove Custom classes as they are not needed.
custom_push_stream = speechsdk.audio.PushAudioInputStream(stream_format=audioFormat)
audio_config = AudioConfig(stream=custom_push_stream)
recognizer = speechsdk.translation.TranslationRecognizer(translation_config=translation_config, audio_config=audio_config)
# Create an event
synthesis_done = Event()
def synthesis_callback(evt):
size = len(evt.result.audio)
print('AUDIO SYNTHESIZED: {} byte(s) {}'.format(size, '(COMPLETED)' if size == 0 else ''))
if size > 0:
t_sound_file = open("translated_output.wav", "wb+")
t_sound_file.write(evt.result.audio)
t_sound_file.close()
# Setting the event
synthesis_done.set()
def recognized_complete(evt):
if evt.result.reason == speechsdk.ResultReason.TranslatedSpeech:
print("RECOGNIZED '{}': {}".format(fromLanguage, result.text))
print("TRANSLATED into {}: {}".format(toLanguage, result.translations['hi']))
elif evt.result.reason == speechsdk.ResultReason.RecognizedSpeech:
print("RECOGNIZED: {} (text could not be translated)".format(result.text))
elif evt.result.reason == speechsdk.ResultReason.NoMatch:
print("NOMATCH: Speech could not be recognized: {}".format(result.no_match_details))
elif evt.reason == speechsdk.ResultReason.Canceled:
print("CANCELED: Reason={}".format(result.cancellation_details.reason))
if result.cancellation_details.reason == speechsdk.CancellationReason.Error:
print("CANCELED: ErrorDetails={}".format(result.cancellation_details.error_details))
recognizer.synthesizing.connect(synthesis_callback)
recognizer.recognized.connect(recognized_complete)
# Read and get data from an audio file
open_audio_file = open("speech_wav_audio.wav", 'rb')
file_bytes = open_audio_file.read()
# Write the bytes to the stream
custom_push_stream.write(file_bytes)
custom_push_stream.close()
# Start the recognition
recognizer.start_continuous_recognition()
# Waiting for the event to complete
synthesis_done.wait()
# Once the event gets completed you can call Stop recognition
recognizer.stop_continuous_recognition()
I have used Event from thread since start_continuous_recognition starts in a different thread and you won't get data from callback events if you don't use threading. synthesis_done.wait will solve this problem by waiting for the event to complete and only then will call the stop_continuous_recognition. Once you obtain the audio bytes you can do whatever you wish in the synthesis_callback. I have simplified the example and took bytes from a wav file.
The example code provided uses a callback as the stream parameter to AudioConfig, which doesn’t seem to be allowed.
This code should work without throwing an error:
pull_audio_input_stream_callback = CustomPullAudioInputStreamCallback()
pull_audio_input_stream = PullAudioInputStream(pull_stream_callback=pull_audio_input_stream_callback, stream_format=audioFormat)
audio_config = AudioConfig(use_default_microphone=False, stream=pull_audio_input_stream)

how to add transfer syntax uid to the filemeta of dataset

I use pydicom library to generate .dcm files using the datasets coming from the CT and MRI machines, however in that dataset, the tag (0002,0010) is missing. As I dont have that tag, I am not able to detect the transfer syntax whether it is implicit VR little endian, explicit VR little endian, jpeg lossless etc. I need the transfer syntax for saving the dataset with flags like below
ds.is_little_endian = True
ds.is_implicit_VR = False
ds.file_meta.TransferSyntaxUID = JPEGLossless
ds.is_explicit_VR = True etc
If I dont use the above flags, then the dcm file that is generated will not be valid as there is no transfer syntax.
Since I dont know the transfer syntax, I am sending the transfer syntax in command line arguments when I run the program, and setting the above flags accordingly, and saving the dataset. I know this is wrong method but I just used it as a temporary solution. Is there any better way to detect the transfer syntax please as the tag (0002, 0010) is missing.
Below is my code that I use for saving the dcm file using the dataset coming from the CT machine. For now i am sending the transfer syntax as command line argument
from pynetdicom3 import AE, VerificationPresentationContexts, StoragePresentationContexts, QueryRetrievePresentationContexts
from pydicom.uid import ImplicitVRLittleEndian, ExplicitVRLittleEndian, JPEGLossless
from pynetdicom3.sop_class import CTImageStorage, MRImageStorage
from pynetdicom3 import pynetdicom_uid_prefix
from pydicom.dataset import Dataset, FileDataset
import argparse
import uuid
import os
import django
import logging
ttt = []
ttt.extend(VerificationPresentationContexts)
ttt.extend(StoragePresentationContexts)
ttt.extend(QueryRetrievePresentationContexts)
os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'lh_dcm_viewer.settings')
django.setup()
from dcm_app.models import DCMFile, DCMFileException
def _setup_argparser():
parser = argparse.ArgumentParser(
description="The getscp application implements a Service Class "
"Provider (SCP) for the Query/Retrieve (QR) Service Class "
"and the Basic Worklist Management (BWM) Service Class. "
"getscp only supports query functionality using the C-GET "
"message. It receives query keys from an SCU and sends a "
"response. The application can be used to test SCUs of the "
"QR and BWM Service Classes.",
usage="getscp [options] port")
# Parameters
# Transfer Syntaxes
ts_opts = parser.add_argument_group('Preferred Transfer Syntaxes')
ts_opts.add_argument("--type",
help="prefer explicit VR local byte order (default)")
ts_opts.add_argument("--detect_transfer_syntax",
help="Detect transfer syntax")
ts_opts.add_argument("--port",
help="port at which the SCP listens")
return parser.parse_args()
args = _setup_argparser()
ae = AE(ae_title=b'MY_ECHO_SCP', port=int(args.port))
if args.type == "jpeg_lossless":
ae.add_supported_context('1.2.840.10008.1.2.4.57')
elif args.type == "implicit":
ae.add_supported_context('1.2.840.10008.1.2')
print("ImplicitVRLittleEndian")
elif args.type == "explicit":
ae.add_supported_context('1.2.840.10008.1.2.1')
ae.requested_contexts = ttt
ae.supported_contexts = ttt
DICOM_IP = '192.168.1.11'
DICOM_IP = '127.0.0.1'
DICOM_PORT = 5678
def save_file(dataset, context, info):
try:
random_str = uuid.uuid4().hex
meta = Dataset()
meta.MediaStorageSOPClassUID = dataset.SOPClassUID
meta.MediaStorageSOPInstanceUID = dataset.SOPInstanceUID
meta.ImplementationClassUID = pynetdicom_uid_prefix
meta.FileMetaInformationGroupLength = 202
received_file_path = "../received_dcms/%s.dcm" % random_str
dataset_vr = None
try:
dataset_vr = dataset[("6000", "3000")].VR
except KeyError:
pass
print(dataset_vr)
if args.type == "implicit" or dataset_vr == "OB or OW":
ds = FileDataset(received_file_path, {}, file_meta=meta, preamble=b"\0" * 128)
ds.update(dataset)
ds.is_little_endian = True
ds.is_implicit_VR = True
if(dataset_vr == "OB or OW"):
print("forced ImplicitVRLittleEndian")
ds.file_meta.TransferSyntaxUID = ImplicitVRLittleEndian
elif args.type == "jpeg_lossless":
ds = FileDataset(received_file_path, {}, file_meta=meta, preamble=b"\0" * 128)
ds.update(dataset)
ds.is_little_endian = True
ds.is_implicit_VR = False
ds.file_meta.TransferSyntaxUID = JPEGLossless
ds.is_explicit_VR = True
elif args.type == "explicit":
meta.TransferSyntaxUID = "1.2.840.10008.1.2.1"
ds = FileDataset(received_file_path, {}, file_meta=meta, preamble=b"\0" * 128)
ds.update(dataset)
ds.is_little_endian = True
ds.is_implicit_VR = False
ds.file_meta.TransferSyntaxUID = ExplicitVRLittleEndian
ds.is_explicit_VR = True
ds.save_as(received_file_path)
f = open(received_file_path, "rb")
f.close()
return 0XC200
return status
except Exception as e:
logger.error(e)
ae.on_c_store = save_file
ae.start()
I hate to send you away but this is a very specialized tool and it has it's own support community. I looked up your issue and found it might be a bug. There is a user who is having a similar problem and he said the transfer syntax is not missing if he uses an older version of the library.
SIMILAR ISSUE:
https://groups.google.com/forum/#!topic/pydicom/Oxd7cbCwseU
Support for this library is found here:
https://groups.google.com/forum/#!forum/pydicom
The code itself is maintained on GitHub where you can open bug reports and view all other bug reports: https://github.com/pydicom/pydicom/issues

Speed up reading wav in python

Evening,
I am working on a project that requires me to read in multichannel wav files in 32-bit float.
When I read a specific file (1 minute long, 6 channels, 48k fs) in into Matlab and measure it with tic/toc it parses the file in 2.456482 seconds.
Matlab Code for file reading speed measurement
tic
wavread('C:/data/testData/6ch.wav');
toc
When I do it in python (mind you, I'm pretty unfamiliar with python) it takes 18.1655315617 seconds!
It seems to me like the way I am doing it is inefficient (I did get it down to 18 from 28 but it's still too much...)
I stripped the code to what is relevant to this subject:
Python Code for file reading speed measurement
import wave32
import struct
import time
import numpy as np
def getWavData(inFile)
wavFile = wave32.open(inFile, 'r')
wavParams = wavFile.getparams()
nChannels = wavParams[0]
byteDepth = wavParams[1]
nFrames = wavParams[3]
wavData = np.empty([nFrames, nChannels], np.float32)
frames = wavFile.readframes(nFrames)
for i in range(nFrames):
for j in range(nChannels):
start = ( i * nChannels + j ) * byteDepth
stop = start + byteDepth
wavData[i][j] = struct.unpack('<f', frames[start:stop])[0]
return wavData
inFile = 'C:/data/testData/6ch.wav'
start = time.clock()
data2 = getWavData(inFile)
elapsed = time.clock()
elapsedNew = elapsed - start
print str(elapsedNew)
please not that wav32 is a small hack I had to perform on wave.py to enable 32-bit float reading.
"""Stuff to parse WAVE files.
Usage.
Reading WAVE files:
f = wave.open(file, 'r')
where file is either the name of a file or an open file pointer.
The open file pointer must have methods read(), seek(), and close().
When the setpos() and rewind() methods are not used, the seek()
method is not necessary.
This returns an instance of a class with the following public methods:
getnchannels() -- returns number of audio channels (1 for
mono, 2 for stereo)
getsampwidth() -- returns sample width in bytes
getframerate() -- returns sampling frequency
getnframes() -- returns number of audio frames
getcomptype() -- returns compression type ('NONE' for linear samples)
getcompname() -- returns human-readable version of
compression type ('not compressed' linear samples)
getparams() -- returns a tuple consisting of all of the
above in the above order
getmarkers() -- returns None (for compatibility with the
aifc module)
getmark(id) -- raises an error since the mark does not
exist (for compatibility with the aifc module)
readframes(n) -- returns at most n frames of audio
rewind() -- rewind to the beginning of the audio stream
setpos(pos) -- seek to the specified position
tell() -- return the current position
close() -- close the instance (make it unusable)
The position returned by tell() and the position given to setpos()
are compatible and have nothing to do with the actual position in the
file.
The close() method is called automatically when the class instance
is destroyed.
Writing WAVE files:
f = wave.open(file, 'w')
where file is either the name of a file or an open file pointer.
The open file pointer must have methods write(), tell(), seek(), and
close().
This returns an instance of a class with the following public methods:
setnchannels(n) -- set the number of channels
setsampwidth(n) -- set the sample width
setframerate(n) -- set the frame rate
setnframes(n) -- set the number of frames
setcomptype(type, name)
-- set the compression type and the
human-readable compression type
setparams(tuple)
-- set all parameters at once
tell() -- return current position in output file
writeframesraw(data)
-- write audio frames without pathing up the
file header
writeframes(data)
-- write audio frames and patch up the file header
close() -- patch up the file header and close the
output file
You should set the parameters before the first writeframesraw or
writeframes. The total number of frames does not need to be set,
but when it is set to the correct value, the header does not have to
be patched up.
It is best to first set all parameters, perhaps possibly the
compression type, and then write audio frames using writeframesraw.
When all frames have been written, either call writeframes('') or
close() to patch up the sizes in the header.
The close() method is called automatically when the class instance
is destroyed.
"""
import __builtin__
__all__ = ["open", "openfp", "Error"]
class Error(Exception):
pass
WAVE_FORMAT_PCM = 0x0001
WAVE_FORMAT_IEEE_FLOAT = 0x0003
_array_fmts = None, 'b', 'h', None, 'l'
# Determine endian-ness
import struct
if struct.pack("h", 1) == "\000\001":
big_endian = 1
else:
big_endian = 0
from chunk import Chunk
class Wave_read:
"""Variables used in this class:
These variables are available to the user though appropriate
methods of this class:
_file -- the open file with methods read(), close(), and seek()
set through the __init__() method
_nchannels -- the number of audio channels
available through the getnchannels() method
_nframes -- the number of audio frames
available through the getnframes() method
_sampwidth -- the number of bytes per audio sample
available through the getsampwidth() method
_framerate -- the sampling frequency
available through the getframerate() method
_comptype -- the AIFF-C compression type ('NONE' if AIFF)
available through the getcomptype() method
_compname -- the human-readable AIFF-C compression type
available through the getcomptype() method
_soundpos -- the position in the audio stream
available through the tell() method, set through the
setpos() method
These variables are used internally only:
_fmt_chunk_read -- 1 iff the FMT chunk has been read
_data_seek_needed -- 1 iff positioned correctly in audio
file for readframes()
_data_chunk -- instantiation of a chunk class for the DATA chunk
_framesize -- size of one frame in the file
"""
def initfp(self, file):
self._convert = None
self._soundpos = 0
self._file = Chunk(file, bigendian = 0)
if self._file.getname() != 'RIFF':
raise Error, 'file does not start with RIFF id'
if self._file.read(4) != 'WAVE':
raise Error, 'not a WAVE file'
self._fmt_chunk_read = 0
self._data_chunk = None
while 1:
self._data_seek_needed = 1
try:
chunk = Chunk(self._file, bigendian = 0)
except EOFError:
break
chunkname = chunk.getname()
if chunkname == 'fmt ':
self._read_fmt_chunk(chunk)
self._fmt_chunk_read = 1
elif chunkname == 'data':
if not self._fmt_chunk_read:
raise Error, 'data chunk before fmt chunk'
self._data_chunk = chunk
self._nframes = chunk.chunksize // self._framesize
self._data_seek_needed = 0
break
chunk.skip()
if not self._fmt_chunk_read or not self._data_chunk:
raise Error, 'fmt chunk and/or data chunk missing'
def __init__(self, f):
self._i_opened_the_file = None
if isinstance(f, basestring):
f = __builtin__.open(f, 'rb')
self._i_opened_the_file = f
# else, assume it is an open file object already
try:
self.initfp(f)
except:
if self._i_opened_the_file:
f.close()
raise
def __del__(self):
self.close()
#
# User visible methods.
#
def getfp(self):
return self._file
def rewind(self):
self._data_seek_needed = 1
self._soundpos = 0
def close(self):
if self._i_opened_the_file:
self._i_opened_the_file.close()
self._i_opened_the_file = None
self._file = None
def tell(self):
return self._soundpos
def getnchannels(self):
return self._nchannels
def getnframes(self):
return self._nframes
def getsampwidth(self):
return self._sampwidth
def getframerate(self):
return self._framerate
def getcomptype(self):
return self._comptype
def getcompname(self):
return self._compname
def getparams(self):
return self.getnchannels(), self.getsampwidth(), \
self.getframerate(), self.getnframes(), \
self.getcomptype(), self.getcompname()
def getmarkers(self):
return None
def getmark(self, id):
raise Error, 'no marks'
def setpos(self, pos):
if pos < 0 or pos > self._nframes:
raise Error, 'position not in range'
self._soundpos = pos
self._data_seek_needed = 1
def readframes(self, nframes):
if self._data_seek_needed:
self._data_chunk.seek(0, 0)
pos = self._soundpos * self._framesize
if pos:
self._data_chunk.seek(pos, 0)
self._data_seek_needed = 0
if nframes == 0:
return ''
if self._sampwidth > 1 and big_endian:
# unfortunately the fromfile() method does not take
# something that only looks like a file object, so
# we have to reach into the innards of the chunk object
import array
chunk = self._data_chunk
data = array.array(_array_fmts[self._sampwidth])
nitems = nframes * self._nchannels
if nitems * self._sampwidth > chunk.chunksize - chunk.size_read:
nitems = (chunk.chunksize - chunk.size_read) / self._sampwidth
data.fromfile(chunk.file.file, nitems)
# "tell" data chunk how much was read
chunk.size_read = chunk.size_read + nitems * self._sampwidth
# do the same for the outermost chunk
chunk = chunk.file
chunk.size_read = chunk.size_read + nitems * self._sampwidth
data.byteswap()
data = data.tostring()
else:
data = self._data_chunk.read(nframes * self._framesize)
if self._convert and data:
data = self._convert(data)
self._soundpos = self._soundpos + len(data) // (self._nchannels * self._sampwidth)
return data
#
# Internal methods.
#
def _read_fmt_chunk(self, chunk):
wFormatTag, self._nchannels, self._framerate, dwAvgBytesPerSec, wBlockAlign = struct.unpack('<hhllh', chunk.read(14))
if wFormatTag == WAVE_FORMAT_PCM or wFormatTag==WAVE_FORMAT_IEEE_FLOAT:
sampwidth = struct.unpack('<h', chunk.read(2))[0]
self._sampwidth = (sampwidth + 7) // 8
else:
#sampwidth = struct.unpack('<h', chunk.read(2))[0]
#self._sampwidth = (sampwidth + 7) // 8
raise Error, 'unknown format: %r' % (wFormatTag,)
self._framesize = self._nchannels * self._sampwidth
self._comptype = 'NONE'
self._compname = 'not compressed'
class Wave_write:
"""Variables used in this class:
These variables are user settable through appropriate methods
of this class:
_file -- the open file with methods write(), close(), tell(), seek()
set through the __init__() method
_comptype -- the AIFF-C compression type ('NONE' in AIFF)
set through the setcomptype() or setparams() method
_compname -- the human-readable AIFF-C compression type
set through the setcomptype() or setparams() method
_nchannels -- the number of audio channels
set through the setnchannels() or setparams() method
_sampwidth -- the number of bytes per audio sample
set through the setsampwidth() or setparams() method
_framerate -- the sampling frequency
set through the setframerate() or setparams() method
_nframes -- the number of audio frames written to the header
set through the setnframes() or setparams() method
These variables are used internally only:
_datalength -- the size of the audio samples written to the header
_nframeswritten -- the number of frames actually written
_datawritten -- the size of the audio samples actually written
"""
def __init__(self, f):
self._i_opened_the_file = None
if isinstance(f, basestring):
f = __builtin__.open(f, 'wb')
self._i_opened_the_file = f
try:
self.initfp(f)
except:
if self._i_opened_the_file:
f.close()
raise
def initfp(self, file):
self._file = file
self._convert = None
self._nchannels = 0
self._sampwidth = 0
self._framerate = 0
self._nframes = 0
self._nframeswritten = 0
self._datawritten = 0
self._datalength = 0
self._headerwritten = False
def __del__(self):
self.close()
#
# User visible methods.
#
def setnchannels(self, nchannels):
if self._datawritten:
raise Error, 'cannot change parameters after starting to write'
if nchannels < 1:
raise Error, 'bad # of channels'
self._nchannels = nchannels
def getnchannels(self):
if not self._nchannels:
raise Error, 'number of channels not set'
return self._nchannels
def setsampwidth(self, sampwidth):
if self._datawritten:
raise Error, 'cannot change parameters after starting to write'
if sampwidth < 1 or sampwidth > 4:
raise Error, 'bad sample width'
self._sampwidth = sampwidth
def getsampwidth(self):
if not self._sampwidth:
raise Error, 'sample width not set'
return self._sampwidth
def setframerate(self, framerate):
if self._datawritten:
raise Error, 'cannot change parameters after starting to write'
if framerate <= 0:
raise Error, 'bad frame rate'
self._framerate = framerate
def getframerate(self):
if not self._framerate:
raise Error, 'frame rate not set'
return self._framerate
def setnframes(self, nframes):
if self._datawritten:
raise Error, 'cannot change parameters after starting to write'
self._nframes = nframes
def getnframes(self):
return self._nframeswritten
def setcomptype(self, comptype, compname):
if self._datawritten:
raise Error, 'cannot change parameters after starting to write'
if comptype not in ('NONE',):
raise Error, 'unsupported compression type'
self._comptype = comptype
self._compname = compname
def getcomptype(self):
return self._comptype
def getcompname(self):
return self._compname
def setparams(self, params):
nchannels, sampwidth, framerate, nframes, comptype, compname = params
if self._datawritten:
raise Error, 'cannot change parameters after starting to write'
self.setnchannels(nchannels)
self.setsampwidth(sampwidth)
self.setframerate(framerate)
self.setnframes(nframes)
self.setcomptype(comptype, compname)
def getparams(self):
if not self._nchannels or not self._sampwidth or not self._framerate:
raise Error, 'not all parameters set'
return self._nchannels, self._sampwidth, self._framerate, \
self._nframes, self._comptype, self._compname
def setmark(self, id, pos, name):
raise Error, 'setmark() not supported'
def getmark(self, id):
raise Error, 'no marks'
def getmarkers(self):
return None
def tell(self):
return self._nframeswritten
def writeframesraw(self, data):
self._ensure_header_written(len(data))
nframes = len(data) // (self._sampwidth * self._nchannels)
if self._convert:
data = self._convert(data)
if self._sampwidth > 1 and big_endian:
import array
data = array.array(_array_fmts[self._sampwidth], data)
data.byteswap()
data.tofile(self._file)
self._datawritten = self._datawritten + len(data) * self._sampwidth
else:
self._file.write(data)
self._datawritten = self._datawritten + len(data)
self._nframeswritten = self._nframeswritten + nframes
def writeframes(self, data):
self.writeframesraw(data)
if self._datalength != self._datawritten:
self._patchheader()
def close(self):
if self._file:
self._ensure_header_written(0)
if self._datalength != self._datawritten:
self._patchheader()
self._file.flush()
self._file = None
if self._i_opened_the_file:
self._i_opened_the_file.close()
self._i_opened_the_file = None
#
# Internal methods.
#
def _ensure_header_written(self, datasize):
if not self._headerwritten:
if not self._nchannels:
raise Error, '# channels not specified'
if not self._sampwidth:
raise Error, 'sample width not specified'
if not self._framerate:
raise Error, 'sampling rate not specified'
self._write_header(datasize)
def _write_header(self, initlength):
assert not self._headerwritten
self._file.write('RIFF')
if not self._nframes:
self._nframes = initlength / (self._nchannels * self._sampwidth)
self._datalength = self._nframes * self._nchannels * self._sampwidth
self._form_length_pos = self._file.tell()
self._file.write(struct.pack('<l4s4slhhllhh4s',
36 + self._datalength, 'WAVE', 'fmt ', 16,
WAVE_FORMAT_PCM, self._nchannels, self._framerate,
self._nchannels * self._framerate * self._sampwidth,
self._nchannels * self._sampwidth,
self._sampwidth * 8, 'data'))
self._data_length_pos = self._file.tell()
self._file.write(struct.pack('<l', self._datalength))
self._headerwritten = True
def _patchheader(self):
assert self._headerwritten
if self._datawritten == self._datalength:
return
curpos = self._file.tell()
self._file.seek(self._form_length_pos, 0)
self._file.write(struct.pack('<l', 36 + self._datawritten))
self._file.seek(self._data_length_pos, 0)
self._file.write(struct.pack('<l', self._datawritten))
self._file.seek(curpos, 0)
self._datalength = self._datawritten
def open(f, mode=None):
if mode is None:
if hasattr(f, 'mode'):
mode = f.mode
else:
mode = 'rb'
if mode in ('r', 'rb'):
return Wave_read(f)
elif mode in ('w', 'wb'):
return Wave_write(f)
else:
raise Error, "mode must be 'r', 'rb', 'w', or 'wb'"
openfp = open # B/W compatibility
Sorry for the long code BTW :)
So my question is: is the wave.py module inherently slow (any alternatives to fix this?) or am I doing something inefficient?
I suppose I could just read in the wav header with a custom function and read the file in in a different way, but it seems like this is going to be A LOT of work, especially since I don't know a lot about 1) python and 2) file handling
Kind regards,
K.
Edit: I tried unutbu's suggestion but that does not work as scipy does not accept >16 bit.
When I try to parse the wav file through the scipy wavreader I get this message:
C:\Users\King Broos\AppData\Local\Enthought\Canopy32\System\lib\site-packages\scipy\io\wavfile.py:31: WavFileWarning: Unfamiliar format bytes
warnings.warn("Unfamiliar format bytes", WavFileWarning)
C:\Users\King Broos\AppData\Local\Enthought\Canopy32\System\lib\site-packages\scipy\io\wavfile.py:121: WavFileWarning: chunk not understood
warnings.warn("chunk not understood", WavFileWarning)
Looking into the code of wavfile.py this is the line where it throws the exception:
if (comp != 1 or size > 16):
warnings.warn("Unfamiliar format bytes", WavFileWarning)
I really need either 24 or 32 bit so I guess scipy not an option?
If you can install or have scipy, then use wavfile.read:
import scipy.io.wavfile as wavfile
sample_rate, x = wavfile.read(filename)
You might also want to study the source code, here.
Note that scipy.io.wavfile does not use Python's wave module. I'm not sure if it reads your IEEE_FLOAT format or not, but it does not do the same check as wave.py:
if wFormatTag == WAVE_FORMAT_PCM or wFormatTag==WAVE_FORMAT_IEEE_FLOAT:
sampwidth = struct.unpack('<h', chunk.read(2))[0]
self._sampwidth = (sampwidth + 7) // 8
else:
#sampwidth = struct.unpack('<h', chunk.read(2))[0]
#self._sampwidth = (sampwidth + 7) // 8
raise Error, 'unknown format: %r' % (wFormatTag,)
so perhaps it will work out-of-the-box.
By the way, instead of making your own module, wave32.py which is almost exactly the same as wave.py from the standard library, you could use monkey-patching:
import wave
import struct
WAVE_FORMAT_IEEE_FLOAT = 0x0003
def _read_fmt_chunk(self, chunk):
wFormatTag, self._nchannels, self._framerate, dwAvgBytesPerSec, wBlockAlign = struct.unpack('<hhllh', chunk.read(14))
if wFormatTag == WAVE_FORMAT_PCM or wFormatTag == WAVE_FORMAT_IEEE_FLOAT:
sampwidth = struct.unpack('<h', chunk.read(2))[0]
self._sampwidth = (sampwidth + 7) // 8
else:
raise Error, 'unknown format: %r' % (wFormatTag,)
self._framesize = self._nchannels * self._sampwidth
self._comptype = 'NONE'
self._compname = 'not compressed'
wave.Wave_read._read_fmt_chunk = _read_fmt_chunk
You can also use numpy directly:
import numpy as np
fs = np.fromfile(filename, dtype=np.int32, count=1, offset=24)[0] # Hz
byte_length = np.fromfile(filename, dtype=np.int32, count=1, offset=40)[0]
To manually read pieces of metadata. I recommend using a hex editor and wave format reference to verify the locations for pieces of metadata and the offset to the start of the data chunk (might not be 40 or 44 bytes in).
To read 32-bit WAVE_FORMAT_IEEE_FLOAT:
data = np.fromfile(filename, dtype=np.float32, count=byte_length // 4, offset=44)
To read 24-bit WAVE_FORMAT_PCM:
# prepend zero-byte to each sample (since there's no np.int24)
# then flatten, convert normally and byte-shift to correct for extra byte
data = np.zeros([byte_length // 3, 4], dtype=np.int8)
data[:, 1:] = np.fromfile(filename, dtype=np.int8, count=byte_length, offset=44).reshape(-1, 3)
data = np.right_shift(data.reshape(-1).view(dtype=np.int32), 8)
data = data / 2 ** 23 # if you want to normalize
Depends on the wavefile and machine, but this seems to be ~120 times faster than a loop for a 4.4 MB 24-bit .wav file, but there's likely bigger performance gains for bigger files (until swap is required, I think there's ~5 memory copies performed, including normalization).
This assumes:
No extra chunks at the start of the file, else offset= parameters are wrong
Single channel - reshape the array and/or change the byte order for multi-channel, with something like .reshape(num_channels, -1, order='F')
Little-endian I think

Automatic background changer using Python 2.7.3 not working, though it should

I'm very new to Ubuntu/Python/Bash/Gnome in general, so I still feel like there's a chance I'm doing something wrong, but it's been 3 days now without success...
Here's what the script is supposed to do:
* [✓] Download 1 random image from wallbase.cc
* [✓] Save it to the same directory that the script is running from
* [x] Set it as the wallpaper
There are two attempts made to set the wallpaper two using different commands and NEITHER work when in the script. There is a print statement (2nd line from the bottom) that spits out the correct terminal command because I can C&P the print result and it works fine, it just doesn't work when it's executed in the script.
#!/usr/bin/env python
import urllib2
import os
from gi.repository import Gio
response = urllib2.urlopen("http://wallbase.cc/random/12/eqeq/1366x768/0.000/100/32")
page_source = response.read()
thlink_pos = page_source.find("ico-X")
address_start = (page_source.find("href=\"", thlink_pos) + 6)
address_end = page_source.find("\"", address_start + 1)
response = urllib2.urlopen(page_source[address_start:address_end])
page_source = response.read()
bigwall_pos = page_source.find("bigwall")
address_start = (page_source.find("src=\"", bigwall_pos) + 5)
address_end = page_source.find("\"", address_start + 1)
address = page_source[address_start:address_end]
slash_pos = address.rfind("/") + 1
pic_name = address[slash_pos:]
bashCommand = "wget " + page_source[address_start:address_end]
os.system(bashCommand)
print "Does my new image exists?", os.path.exists(os.getcwd() + "/" + pic_name)
#attempt 1
settings = Gio.Settings.new("org.gnome.desktop.background")
settings.set_string("picture-uri", "file://" + os.getcwd() + "/" + pic_name)
settings.apply()
#attempt 2
bashCommand = "gsettings set org.gnome.desktop.background picture-uri file://" + os.getcwd() + "/" + pic_name
print bashCommand
os.system(bashCommand)
settings.apply()
You've successfully changed your settings, but they're still left unapplied, try next:
settings.apply()
after setting "picture-uri" string.
It works for me (Ubuntu 12.04).
I've modified your script (unrelated to your error):
#!/usr/bin/python
"""Set desktop background using random images from http://wallbase.cc
It uses `gi.repository.Gio.Settings` to set the background.
"""
import functools
import itertools
import logging
import os
import posixpath
import random
import re
import sys
import time
import urllib
import urllib2
import urlparse
from collections import namedtuple
from bs4 import BeautifulSoup # $ sudo apt-get install python-bs4
from gi.repository.Gio import Settings # pylint: disable=F0401,E0611
DEFAULT_IMAGE_DIR = os.path.expanduser('~/Pictures/backgrounds')
HTMLPAGE_SIZE_MAX = 1 << 20 # bytes
TIMEOUT_MIN = 300 # seconds
TIMEOUT_DELTA = 30 # jitter
# "Anime/Manga", "Wallpapers/General", "High Resolution Images"
CATEGORY_W, CATEGORY_WG, CATEGORY_HR = range(1, 4)
PURITY_SFW, PURITY_SKETCHY, PURITY_NSFW, PURITY_DEFAULT = 4, 2, 1, 0
DAY_IN_SECONDS = 86400
UrlRetreiveResult = namedtuple('UrlRetreiveResult', "path headers")
def set_background(image_path, check_exist=True):
"""Change desktop background to image pointed by `image_path`.
"""
if check_exist: # make sure we can read it (at this time)
with open(image_path, 'rb') as f:
f.read(1)
# prepare uri
path = os.path.abspath(image_path)
if isinstance(path, unicode): # quote() doesn't like unicode
path = path.encode('utf-8')
uri = 'file://' + urllib.quote(path)
# change background
bg_setting = Settings.new('org.gnome.desktop.background')
bg_setting.set_string('picture-uri', uri)
bg_setting.apply()
def url2filename(url):
"""Return basename corresponding to url.
>>> url2filename('http://example.com/path/to/file?opt=1')
'file'
"""
urlpath = urlparse.urlsplit(url).path # pylint: disable=E1103
basename = posixpath.basename(urllib.unquote(urlpath))
if os.path.basename(basename) != basename:
raise ValueError # refuse 'dir%5Cbasename.ext' on Windows
return basename
def download(url, dirpath, extensions=True, filename=None):
"""Download url to dirpath.
Use basename of the url path as a filename.
Create destination directory if necessary.
Use `extensions` to require the file to have an extension or any
of in a given sequence of extensions.
Return (path, headers) on success.
Don't retrieve url if path exists (headers are None in this case).
"""
if not os.path.isdir(dirpath):
os.makedirs(dirpath)
logging.info('created directory %s', dirpath)
# get filename from the url
filename = url2filename(url) if filename is None else filename
if os.path.basename(filename) != filename:
logging.critical('filename must not have path separator in it "%s"',
filename)
return
if extensions:
# require the file to have an extension
root, ext = os.path.splitext(filename)
if root and len(ext) > 1:
# require the extension to be in the list
try:
it = iter(extensions)
except TypeError:
pass
else:
if ext not in it:
logging.warn(("file extension is not in the list"
" url=%s"
" extensions=%s"),
url, extensions)
return
else:
logging.warn("file has no extension url=%s", url)
return
# download file
path = os.path.join(dirpath, filename)
logging.info("%s\n%s", url, path)
if os.path.exists(path): # don't retrieve if path exists
logging.info('path exists')
return UrlRetreiveResult(path, None)
try:
return UrlRetreiveResult(*urllib.urlretrieve(url, path,
_print_download_status))
except IOError:
logging.warn('failed to download {url} -> {path}'.format(
url=url, path=path))
def _print_download_status(block_count, block_size, total_size):
logging.debug('%10s bytes of %s', block_count * block_size, total_size)
def min_time_between_calls(min_delay):
"""Enforce minimum time delay between calls."""
def decorator(func):
lastcall = [None] # emulate nonlocal keyword
#functools.wraps(func)
def wrapper(*args, **kwargs):
if lastcall[0] is not None:
delay = time.time() - lastcall[0]
if delay < min_delay:
_sleep(min_delay - delay)
lastcall[0] = time.time()
return func(*args, **kwargs)
return wrapper
return decorator
#min_time_between_calls(5)
def _makesoup(url):
try:
logging.info(vars(url) if isinstance(url, urllib2.Request) else url)
page = urllib2.urlopen(url)
soup = BeautifulSoup(page.read(HTMLPAGE_SIZE_MAX))
return soup
except (IOError, OSError) as e:
logging.warn('failed to return soup for %s, error: %s',
getattr(url, 'get_full_url', lambda: url)(), e)
class WallbaseImages:
"""Given parameters it provides image urls to download."""
def __init__(self,
categories=None, # default; sequence of CATEGORY_*
resolution_exactly=True, # False means 'at least'
resolution=None, # all; (width, height)
aspect_ratios=None, # all; sequence eg, [(5,4),(16,9)]
purity=PURITY_DEFAULT, # combine with |
thumbs_per_page=None, # default; an integer
):
"""See usage below."""
self.categories = categories
self.resolution_exactly = resolution_exactly
self.resolution = resolution
self.aspect_ratios = aspect_ratios
self.purity = purity
self.thumbs_per_page = thumbs_per_page
def _as_request(self):
"""Create a urllib2.Request() using given parameters."""
# make url
if self.categories is not None:
categories = "".join(str(n) for n in (2, 1, 3)
if n in self.categories)
else: # default
categories = "0"
if self.resolution_exactly:
at_least_or_exactly_resolution = "eqeq"
else:
at_least_or_exactly_resolution = "gteq"
if self.resolution is not None:
resolution = "{width:d}x{height:d}".format(
width=self.resolution[0], height=self.resolution[1])
else:
resolution = "0x0"
if self.aspect_ratios is not None:
aspect_ratios = "+".join("%.2f" % (w / float(h),)
for w, h in self.aspect_ratios)
else: # default
aspect_ratios = "0"
purity = "{0:03b}".format(self.purity)
thumbs = 20 if self.thumbs_per_page is None else self.thumbs_per_page
url = ("http://wallbase.cc/random/"
"{categories}/"
"{at_least_or_exactly_resolution}/{resolution}/"
"{aspect_ratios}/"
"{purity}/{thumbs:d}").format(**locals())
logging.info(url)
# make post data
data = urllib.urlencode(dict(query='', board=categories, nsfw=purity,
res=resolution,
res_opt=at_least_or_exactly_resolution,
aspect=aspect_ratios,
thpp=thumbs))
req = urllib2.Request(url, data)
return req
def __iter__(self):
"""Yield background image urls."""
# find links to bigwall pages
# css-like: #thumbs div[class="thumb"] \
# a[class~="thlink" and href^="http://"]
soup = _makesoup(self._as_request())
if not soup:
logging.warn("can't retrieve the main page")
return
thumbs_soup = soup.find(id="thumbs")
for thumb in thumbs_soup.find_all('div', {'class': "thumb"}):
bigwall_a = thumb.find('a', {'class': "thlink",
'href': re.compile(r"^http://")})
if bigwall_a is None:
logging.warn("can't find thlink link")
continue # try the next thumb
# find image url on the bigwall page
# css-like: #bigwall > img[alt and src^="http://"]
bigwall_soup = _makesoup(bigwall_a['href'])
if bigwall_soup is not None:
bigwall = bigwall_soup.find(id='bigwall')
if bigwall is not None:
img = bigwall.find('img',
src=re.compile(r"(?i)^http://.*\.jpg$"),
alt=True)
if img is not None:
url = img['src']
filename = url2filename(url)
if filename.lower().endswith('.jpg'):
yield url, filename # successfully found image url
else:
logging.warn('suspicious url "%s"', url)
continue
logging.warn("can't parse bigwall page")
def main():
level = logging.INFO
if '-d' in sys.argv:
sys.argv.remove('-d')
level = logging.DEBUG
# configure logging
logging.basicConfig(format='%(levelname)s: %(asctime)s %(message)s',
level=level, datefmt='%Y-%m-%d %H:%M:%S %Z')
if len(sys.argv) > 1:
backgrounds_dir = sys.argv[1]
else:
backgrounds_dir = DEFAULT_IMAGE_DIR
# infinite loop: Press Ctrl+C to interrupt it
#NOTE: here's some arbitrary logic: modify for you needs e.g., break
# after the first image found
timeout = TIMEOUT_MIN # seconds
for i in itertools.cycle(xrange(timeout, DAY_IN_SECONDS)):
found = False
try:
for url, filename in WallbaseImages(
categories=[CATEGORY_WG, CATEGORY_HR, CATEGORY_W],
purity=PURITY_SFW,
thumbs_per_page=60):
res = download(url, backgrounds_dir, extensions=('.jpg',),
filename=filename)
if res and res.path:
found = True
set_background(res.path)
# don't hammer the site
timeout = max(TIMEOUT_MIN, i % DAY_IN_SECONDS)
_sleep(random.randint(timeout, timeout + TIMEOUT_DELTA))
except Exception: # pylint: disable=W0703
logging.exception('unexpected error')
_sleep(timeout)
else:
if not found:
logging.error('failed to retrieve any images')
_sleep(timeout)
timeout = (timeout * 2) % DAY_IN_SECONDS
def _sleep(timeout):
"""Add logging to time.sleep() call."""
logging.debug('sleep for %s seconds', timeout)
time.sleep(timeout)
main()
Tried to implement a python script that used the PIL library to write text on an image then update the Gnome background "picture-uri" to point to that image using the Gio class. The python script would ping pong between two images to always modify the one not in use and then attempt to "switch" by updating the Settings. Did this to avoid any flicker as modifying the current background directly drops it out temporarily. While in the shell and calling the script directly I rarely saw any issue, but in the cronjob it simply wouldn't update on the pong. I used both sync and apply and would wait several minutes before trying to switch the images. Didn't work. Tried cron as user (su -c "cmd" user) and that didn't work either.
Finally gave up on the ping pong approach when I noticed that Gnome will detect any change in the background file and update. So dropped the ping pong method and went to a temp file that I just copy over the current background using the shutil library. Works like a charm.

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