i'm trying to use slicereg (https://github.com/brainglobe/slicereg) for data registration.
after import code from github page and install poetry to run slicereg i keep getting the following error :
The virtual environment found in ~\.conda\envs\sliceregenv seems to be broken.
Recreating virtualenv slicereg-6kSWvOuc-py3.8 in ~\AppData\Local\pypoetry\Cache\virtualenvs\slicereg-6kSWvOuc-py3.8
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "~\.conda\envs\sliceregenv\lib\importlib\__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1014, in _gcd_import
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 843, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "~\slicereg\slicereg\main.py", line 3, in <module>
from PySide2.QtWidgets import QApplication
ModuleNotFoundError: No module named 'PySide2'
Pyside2 is already installed in my env using pip.
Any advice on how to resolve this issue ?
Thx
Seems to be an issue, poetry fails to recognize conda environments as valid
see more at https://github.com/python-poetry/poetry/issues/4566
Remain unresolved for the current release (1.1.12)
Update : https://github.com/python-poetry/poetry/issues/5907
Related
After I converted my python project with NUITKA and I started running the following message appeared:
Owlready2 * Warning: optimized Cython parser module 'owlready2_optimized' is not available, defaulting to slower Python implementation
Traceback (most recent call last):
File "/user/try.dist/try.py", line 1, in <module>
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "/user/try.dist/owlready2/__init__.py", line 35, in <module owlready2>
File "<frozen importlib._bootstrap>", line 991, in _find_and_load
File "<frozen importlib._bootstrap>", line 975, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
File "/user/try.dist/owlready2/reasoning.py", line 41, in <module owlready2.reasoning>
FileNotFoundError: [Errno 2] No such file or directory: '/user/try.dist/owlready2/pellet'
Indicating that after I compiled the program some files were not found.
The code that I run was python3 -m nuitka --follow-imports --enable-plugin=numpy --onefile try.py
and the code that I compiled was just simple this:
from owlready2 import *
onto = get_ontology("file:///user/ontologies/try.owl").load()
with onto:
types.new_class("Drug", (Thing,))
onto.save()
So simple there was something wrong with the library.
If anyone knows what to do it will be helpful.
Thanks in advance.
I have changed the location of the file for privacy
I want to use PyCharm with IDAPython. I setup the Python Interpreter by adding the following path to the "Interpreter Paths":
C:\Program Files\IDA Pro 7.7\python\3
After that, it recognize the modules idaapi and idautils which is a good sign.
I wrote a simple scripts to test it:
import idaapi
import idautils
filename = idaapi.get_input_file_path()
I set a breakpoint on the filename... row and it failed with:
Traceback (most recent call last):
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 790, in exec_module
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "C:\Program Files\IDA Pro 7.7\python\3\ida_hexrays.py", line 12, in <module>
import _ida_hexrays
ModuleNotFoundError: No module named '_ida_hexrays'
It doesn't recognize the modules _ida_hexrays. How can I make it work?
I see that there is a file: C:\Program Files\IDA Pro 7.7\python\3\ida_64\_ida_hexrays.pyd.
In the ida_hexrays.py it throws the error when it try to import it like that:
# Import the low-level C/C++ module
if __package__ or "." in __name__:
from . import _ida_hexrays
else:
import _ida_hexrays
I'm tyring to use this program (https://github.com/tbabej/uadt) to test my pcap captures and do some machine learning. I use the command git clone to have everything on my pc, then I use "pip -r install requirements.txt" and then I execute "setup.py install".
Then I need to generate my dataset, so I go to /uadt/uadt/analysis/ and run dataset.py as stated in the Readme, but I get the error
from uadt import config
ImportError: cannot import name 'config' from 'uadt'
What am I doing wrong? Is there another way to install it?
I just need the files in the analysis folder because I've already done the other steps on my own.
Traceback (most recent call last):
File "/usr/local/bin/uadt-dataset", line 33, in <module>
sys.exit(load_entry_point('uadt==0.8.0', 'console_scripts', 'uadt-dataset')())
File "/usr/local/bin/uadt-dataset", line 25, in importlib_load_entry_point
return next(matches).load()
File "/usr/lib/python3.9/importlib/metadata.py", line 77, in load
module = import_module(match.group('module'))
File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 850, in exec_module
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "/usr/local/lib/python3.9/dist-packages/uadt-0.8.0-py3.9.egg/uadt/analysis/dataset.py", line 26, in <module>
from uadt.analysis.flow import Flow
File "/usr/local/lib/python3.9/dist-packages/uadt-0.8.0-py3.9.egg/uadt/analysis/flow.py", line 13, in <module>
from uadt import config
ImportError: cannot import name 'config' from 'uadt' (/usr/local/lib/python3.9/dist-packages/uadt-0.8.0-py3.9.egg/uadt/__init__.py)
You can copy the config.py.in file into the uadt folder.
This could fix your import issue.
system: windows 10,
language: python 3.6.5
I installed the quickfix 1.15.1 by pip install quickfix-1.15.1-cp36-cp36m-win_amd64.whl downloaded from web.
When I try like:
import quickfix
errors:
*Connected to pydev debugger (build 202.6948.78)
Traceback (most recent call last):
File "C:\ProgramData\Anaconda3\lib\site-packages\quickfix.py", line 18, in swig_import_helper
return importlib.import_module(mname)
File "C:\ProgramData\Anaconda3\lib\importlib\__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 994, in _gcd_import
File "<frozen importlib._bootstrap>", line 971, in _find_and_load
File "<frozen importlib._bootstrap>", line 955, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 658, in _load_unlocked
File "<frozen importlib._bootstrap>", line 571, in module_from_spec
File "<frozen importlib._bootstrap_external>", line 922, in create_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
ImportError: DLL load failed: The specified module could not be found.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<frozen importlib._bootstrap>", line 971, in _find_and_load
File "<frozen importlib._bootstrap>", line 955, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 665, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 678, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "C:\ProgramData\Anaconda3\lib\site-packages\quickfix.py", line 21, in <module>
_quickfix = swig_import_helper()
File "C:\ProgramData\Anaconda3\lib\site-packages\quickfix.py", line 20, in swig_import_helper
return importlib.import_module('_quickfix')
File "C:\ProgramData\Anaconda3\lib\importlib\__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
ImportError: DLL load failed: The specified module could not be found.
Process finished with exit code 1*
And I had installed .Net 5.0
If you are sure that quickfix is correctly installed in your environment and the PYTHONPATH has access to this environment, then you can try to check the option 'Load conda env vars before run?' on Window -> Preferences -> PyDev -> Interpreters -> Python Interpreter.
It's possible that the import is failing because that package is using an environment variable to load the modules, and PyDev by default is not loading this variable before running the script.
I’m running into an issue getting pyInstaller to bundle a module that contains SWIG modules. I have followed each of the guidelines listed in the pyInstaller doc which details SWIG support.
I get the following error when running the exe:
# sphinxbase._ad_win32 not found in PYZ
Traceback (most recent call last):
File "StartListening.py", line 10, in <module>
File "<frozen importlib._bootstrap>", line 971, in _find_and_load
File "<frozen importlib._bootstrap>", line 941, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 971, in _find_and_load
File "<frozen importlib._bootstrap>", line 955, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 665, in _load_unlocked
File "c:\users\allen\appdata\local\programs\python\python36-32\lib\site-packages\PyInstaller\loader\pyimod03_importers.py", line 627, in exec_module
exec(bytecode, module.__dict__)
File "site-packages\sphinxbase\__init__.py", line 35, in <module>
File "<frozen importlib._bootstrap>", line 971, in _find_and_load
File "<frozen importlib._bootstrap>", line 955, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 665, in _load_unlocked
File "c:\users\allen\appdata\local\programs\python\python36-32\lib\site-packages\PyInstaller\loader\pyimod03_importers.py", line 627, in exec_module
exec(bytecode, module.__dict__)
File "site-packages\sphinxbase\ad_win32.py", line 32, in <module>
File "site-packages\sphinxbase\ad_win32.py", line 31, in swig_import_helper
File "importlib\__init__.py", line 126, in import_module
File "<frozen importlib._bootstrap>", line 994, in _gcd_import
File "<frozen importlib._bootstrap>", line 971, in _find_and_load
File "<frozen importlib._bootstrap>", line 953, in _find_and_load_unlocked
ModuleNotFoundError: No module named 'sphinxbase._ad_win32'
However, sphinxbase._ad_win32 does exists as a pyd file. I’m running Windows 10; why is pyInstaller having trouble bundling this module?
The third-party package I’m ultimately trying to import is SpeechRecognition which depends on pocketsphinx which depends on sphinxbase which is the module that is having issues.
Here is the object reference returned by
importlib.import_module('sphinxbase._ad_win32')
in the SWIG-generated python wrapper if that is helpful to someone:
<module 'sphinxbase._ad_win32' from 'C:\\Users\\bob\\AppData\\Local\\Programs\\Python\\Python36-32\\lib\\site-packages\\sphinxbase\\_ad_win32.pyd'>
Python version: 3.6.5
Edit: After some more research, I tried adding the .pyd to the 'binaries' list in the .spec file as well as adding 'sphinxbase._ad_win32' to the 'hidden-imports' list and combinations there-between, but this did not work either. The binary is there, in the correct location, I can't figure out why the bundled app can't find it.