Develop Reference

Logits and labels must be broadcastable error?

I am very new to deep learning. I am training on anime illustration images and I am receiving the error: logits and labels must be broadcastable: logits_size=[214,2] labels_size=[214,173]
I am sure there are other errors in my code, but I am unsure where to look. I ran model.summary() and noticed
Total params: 12,219,618
Trainable params: 7,080,962
Non-trainable params: 5,138,656
I could really appreciate any help. Thanks.
import tensorflow as tf
from tensorflow.keras.applications.inception_v3 import InceptionV3
from tensorflow.keras.preprocessing.image import ImageDataGenerator
from tensorflow.keras.models import Sequential, Model
from tensorflow.keras.layers import Conv2D, MaxPooling2D, Activation, Dropout, Flatten, Dense
from tensorflow.keras import backend as K
from tensorflow.keras import metrics, optimizers
import matplotlib.pyplot as plt
train_datagen = ImageDataGenerator(
rescale=1. / 255,
rotation_range = 30,
zoom_range = 0.2,
width_shift_range=0.1,
height_shift_range=0.1,
validation_split = 0.15)
test_datagen = ImageDataGenerator(rescale=1. / 255)
train_generator = train_datagen.flow_from_directory(
train_dir,
target_size = (75,75),
batch_size = 214,
class_mode = 'categorical',
subset='training')
#validation_generator = test_datagen.flow_from_directory(
# validation_dir,
# target_size = (75,75),
# batch_size = 37,
# class_mode = 'categorical',
# subset = 'validation')
test_generator = test_datagen.flow_from_directory(
test_dir,
target_size=(75,75),
batch_size = 32,
class_mode = 'categorical')
# Inspect batch
sample_training_images, _ = next(train_generator)
from tensorflow.keras.applications.inception_v3 import InceptionV3
def model_output_for_TL (pre_trained_model, last_output):
x = Flatten()(last_output)
# Dense hidden layer
x = Dense(1024, activation='relu')(x)
x = Dropout(0.5)(x)
# Output neuron.
x = Dense(2, activation='softmax')(x)
model = Model(pre_trained_model.input, x)
return model
pre_trained_model = InceptionV3(input_shape = (75, 75, 3),
include_top = False,
classes=173,
weights = 'imagenet')
for layer in pre_trained_model.layers:
layer.trainable = False
last_layer = pre_trained_model.get_layer('mixed5')
last_output = last_layer.output
model_TL = model_output_for_TL(pre_trained_model, last_output)
model_TL.compile(optimizer='rmsprop', loss='categorical_crossentropy', metrics=['accuracy'])
history_TL = model_TL.fit(
train_generator,
steps_per_epoch=10,
epochs=60,
verbose=2)
#validation_data = validation_generator)
tf.keras.models.save_model(model_TL,'my_model.hdf5')

Transfer learning using keras

I am trying to classify the medical images taken from publicly available datasets. I used transfer learning for this task. Initially, when I had used the following code on the same dataset with VGG, Resnet, Densenet, and Inception, the accuracy was above 85% without fine-tuning (TensorFlow version 1.15.2.) Now, after upgrading the TensorFlow to 2.x, when I try the same code on the same dataset, the accuracy is never crossing 32%. Can anyone please help me rectify the issue? Is it something to do with the TensorFlow version or something else? I have tried varying the learning rate, fine-tuning the model, etc. Is this the issue with batch normalization error in Keras?
import os
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
os.environ["CUDA_VISIBLE_DEVICES"] = "2"
import sys
import matplotlib.pyplot as plt
import tensorflow as tf
from tensorflow.keras.applications.resnet50 import ResNet50, preprocess_input
from tensorflow.keras.preprocessing.image import ImageDataGenerator
from tensorflow.keras.applications.densenet import DenseNet121
from tensorflow.keras.applications.vgg16 import VGG16
from tensorflow.keras.applications.inception_v3 import InceptionV3
import cv2
import glob
from tensorflow.keras.layers import Input, Dense, Flatten, Conv2D, MaxPooling2D, Dropout
from tensorflow.keras.models import Model
from tensorflow.keras.optimizers import Adam
import tensorflow.keras as keras
from tensorflow.keras.callbacks import ModelCheckpoint, EarlyStopping
import numpy as np
from sklearn.metrics import accuracy_score
from sklearn.metrics import confusion_matrix
from keras import backend as k
from mlxtend.evaluate import confusion_matrix
from mlxtend.plotting import plot_confusion_matrix
import math
import pandas as pd
from openpyxl import load_workbook
save_dir = '../new_tran/'
def extract_outputs(cnf_matrix, mdl_name):
cnf_matrix_T=np.transpose(cnf_matrix)
recall = np.diag(cnf_matrix) / np.sum(cnf_matrix, axis = 1)
precision = np.diag(cnf_matrix) / np.sum(cnf_matrix, axis = 0)
n_class=3
TP=np.zeros(n_class)
FN=np.zeros(n_class)
FP=np.zeros(n_class)
TN=np.zeros(n_class)
for i in range(n_class):
TP[i]=cnf_matrix[i,i]
FN[i]=np.sum(cnf_matrix[i])-cnf_matrix[i,i]
FP[i]=np.sum(cnf_matrix_T[i])-cnf_matrix[i,i]
TN[i]=np.sum(cnf_matrix)-TP[i]-FP[i]-FN[i]
P=TP+FN
N=FP+TN
classwise_sensitivity=np.true_divide(TP,P)
classwise_specificity=np.true_divide(TN,N)
classwise_accuracy=np.true_divide((TP+TN), (P+N))
OS=np.mean(classwise_sensitivity)
OSp=np.mean(classwise_specificity)
OA=np.sum(np.true_divide(TP,(P+N)))
Px=np.sum(P)
TPx=np.sum(TP)
FPx=np.sum(FP)
TNx=np.sum(TN)
FNx=np.sum(FN)
Nx=np.sum(N)
pox=OA
pex=((Px*(TPx+FPx))+(Nx*(FNx+TNx)))/(math.pow((TPx+TNx+FPx+FNx),2))
kappa_overall=[np.true_divide(( pox-pex ), ( 1-pex )),np.true_divide(( pex-pox ), ( 1-pox ))]
kappa=np.max(kappa_overall)
Rcl=np.mean(recall)
Prcn=np.mean(precision)
#######--------------------- Print all scores
print('classwise_sen',classwise_sensitivity*100)
print('classwise_spec',classwise_specificity*100)
print('classwise_acc',classwise_accuracy*100)
print('overall_sen',OS*100)
print('overall_spec',OSp*100)
print('overall_acc',OA*100)
print('overall recall', Rcl)
print('overall precision',Prcn)
f1score=(2 * Prcn * Rcl) / (Prcn + Rcl)
print('overall F1-score',f1score )
print('Kappa',kappa)
def preProcess(X):
X = X.astype('float32')
# scale from [0,255] to [-1,1]
X = (X - 127.5) / 127.5
return X
train_datagen = ImageDataGenerator(preprocessing_function=preProcess)
test_datagen = ImageDataGenerator(preprocessing_function=preProcess)
IMG_SIZE = 256
batch_size = 16
train_data_dir = '../data/train/'
test_dir = '../data/test/'
val_dir = '../data/val/'
train_generator = train_datagen.flow_from_directory(
train_data_dir,
target_size=(IMG_SIZE , IMG_SIZE),
batch_size=16,
class_mode='sparse')
valid_generator = train_datagen.flow_from_directory(
val_dir,
target_size=(IMG_SIZE , IMG_SIZE),
batch_size=16,
class_mode='sparse')
test_generator = train_datagen.flow_from_directory(
test_dir,
target_size=(IMG_SIZE , IMG_SIZE),
batch_size=16,
class_mode='sparse')
test_im=np.concatenate([test_generator.next()[0] for i in range(test_generator.__len__())])
test_lb=np.concatenate([test_generator.next()[1] for i in range(test_generator.__len__())])
t_x, t_y = next(train_generator)
checkpoint1 = ModelCheckpoint(save_dir+"best_res.hdf5", monitor='val_accuracy', verbose=1, save_best_only=True, mode='max')
checkpoint2 = EarlyStopping(monitor='val_loss', patience=10, verbose=0, mode='min')
callbacks_list1 = [checkpoint1, checkpoint2]
def new_model():
img_in = Input(t_x.shape[1:])
model = DenseNet121(include_top= False ,
layers=tf.keras.layers,
weights='imagenet',
input_tensor= img_in,
input_shape= t_x.shape[1:],
pooling ='avg')
x = model.output
predictions = Dense(3, activation="softmax", name="predictions")(x)
model = Model(inputs=img_in, outputs=predictions)
return model
model1 = new_model()
opt = Adam(lr=3E-4)
model1.compile(optimizer = opt, loss = 'sparse_categorical_crossentropy',metrics = ['accuracy'])
history1 = model1.fit(train_generator,
validation_data = valid_generator,
epochs = 200,
callbacks=callbacks_list1)
model1.load_weights(save_dir+'best_res.hdf5')
model1.compile(optimizer = opt, loss = 'sparse_categorical_crossentropy',metrics = ['accuracy'])
y_pred1 = model1.predict(test_im)
pred_class1=np.argmax(y_pred1,axis=1)
print('accuracy = ',accuracy_score(pred_class1,test_lb))
cm = confusion_matrix(y_target=test_lb,y_predicted=pred_class1, binary=False)
print(cm)
fig, ax = plot_confusion_matrix(conf_mat=cm)
plt.gcf().savefig(save_dir+"resnet.png", dpi=144)
plt.close()
extract_outputs(cm, 'Resnet')
Here are some of the screenshots of the output from tensorflow 2.x

Basically the flow_from_directory by default shuffle the data and you didn't change it.
Just add shuffle=False to your test_generator should be enough.
Like
test_generator = train_datagen.flow_from_directory(
test_dir,
target_size=(IMG_SIZE, IMG_SIZE),
batch_size=16,
class_mode='sparse',
shuffle=False)
Or if you really want to have it shuffled then test_im and test_lb have to be in the same order. For example
test_im = []
test_lb = []
for im, lb in test_generator:
test_im.append(im)
test_lb.append(lb)
test_im = np.array(test_im)
test_lb = np.array(test_lb)

Poor Validation Acc and High Validation Loss for resnet50

After trying out VGG16 and having really good results, I was trying to train a ResNet50 Model from Imagenet. First I set all layers to trainable because I have a large Dataset and did the same with VGG16, but my results were quite bad.
Then I tried to set the layers to not trainable and see if it gets better, but the results were still bad.
My original images are of size 384x384 but I resized them to 224x224. Is that the issue? Or did I do something wrong while implementing it?
from keras import Input, Model
from keras.applications import ResNet50
from keras.layers import AveragePooling2D, Flatten, Dense, Dropout
from keras.optimizers import Adam
from keras_preprocessing.image import ImageDataGenerator
class example:
def __init__(self):
# define the names of the classes
self.CLASSES = ["nok", "ok"]
# initialize the initial learning rate, batch size, and number of
# epochs to train for
self.INIT_LR = 1e-4
self.BS = 32
self.NUM_EPOCHS = 32
def build_model(self, train_path):
train_data_path = train_path
train_datagen = ImageDataGenerator(rescale=1. / 255, validation_split=0.25)
train_generator = train_datagen.flow_from_directory(
train_data_path,
target_size=(224,224),
color_mode="rgb",
batch_size=self.BS,
class_mode='categorical',
subset='training')
validation_generator = train_datagen.flow_from_directory(
train_data_path,
target_size=(224, 224),
color_mode="rgb",
batch_size=self.BS,
class_mode='categorical',
subset='validation')
# load the ResNet-50 network, ensuring the head FC layer sets are left off
baseModel = ResNet50(weights="imagenet", include_top=False,
input_tensor = Input(shape=(224, 224, 3)))
# construct the head of the model that will be placed on top of the the base model
headModel = baseModel.output
headModel = AveragePooling2D(pool_size=(7, 7))(headModel)
headModel = Flatten(name="flatten")(headModel)
headModel = Dense(256, activation="relu")(headModel)
headModel = Dropout(0.5)(headModel)
headModel = Dense(len(self.CLASSES), activation="softmax")(headModel)
# place the head FC model on top of the base model (this will become the actual model we will train)
model = Model(inputs=baseModel.input, outputs=headModel)
for layer in baseModel.layers:
layer.trainable = True
# compile the model
opt = Adam(lr=self.INIT_LR)#, decay=self.INIT_LR / self.NUM_EPOCHS)
model.compile(loss="binary_crossentropy", optimizer=opt,
metrics=["accuracy"])
from keras.callbacks import ModelCheckpoint, EarlyStopping
import matplotlib.pyplot as plt
checkpoint = ModelCheckpoint('resnetModel.h5', monitor='val_accuracy', verbose=1, save_best_only=True,
save_weights_only=False, mode='auto', period=1)
early = EarlyStopping(monitor='val_accuracy', min_delta=0, patience=6, verbose=1, mode='auto')
hist = model.fit_generator(steps_per_epoch=self.BS, generator=train_generator,
validation_data=validation_generator, validation_steps=32, epochs=self.NUM_EPOCHS,
callbacks=[checkpoint, early])
plt.plot(hist.history['accuracy'])
plt.plot(hist.history['val_accuracy'])
plt.plot(hist.history['loss'])
plt.plot(hist.history['val_loss'])
plt.title("model accuracy")
plt.ylabel("Accuracy")
plt.xlabel("Epoch")
plt.legend(["Accuracy", "Validation Accuracy", "loss", "Validation Loss"])
plt.show()
plt.figure(1)
import tensorflow as tf
if __name__ == '__main__':
x = example()
config = tf.compat.v1.ConfigProto()
config.gpu_options.allow_growth = True
sess = tf.compat.v1.Session(config=config)
x.build_model("C:/Users/but/Desktop/dataScratch/Train")
I have 2 Classes which contain images of integrated circuits with defect and non defect images. My Batch Size is 32, Epoches is 32, LR is 1e-4.
Here are example images:
This is a defect image
This is an ok image

model.predict() function always returns 1 for binary image classification model

I was working on a binary image classification deep learning model using transfer learning in Google colab.
!wget https://storage.googleapis.com/mledu-datasets/inception_v3_weights_tf_dim_ordering_tf_kernels_notop.h5 -O /tmp/inception_v3_weights_tf_dim_ordering_tf_kernels_notop.h5
local_weights_file = '/tmp/inception_v3_weights_tf_dim_ordering_tf_kernels_notop.h5'
pre_trained_model = InceptionV3(input_shape = (300, 300, 3),
include_top = False,
weights = None)
pre_trained_model.load_weights(local_weights_file)
for layer in pre_trained_model.layers:
layer.trainable = False
last_layer = pre_trained_model.get_layer('mixed7')
last_output = last_layer.output
x = layers.Flatten()(last_output)
x = layers.Dense(512, activation='relu')(x)
x = layers.Dropout(0.2)(x)
x = layers.Dense(1, activation='sigmoid')(x)
model = Model(pre_trained_model.input, x)
from tensorflow.keras.optimizers import RMSprop
model.compile(optimizer=RMSprop(lr=0.0001),
loss='binary_crossentropy',
metrics=['accuracy'])
from tensorflow.keras.preprocessing.image import ImageDataGenerator
train_datagen = ImageDataGenerator(
rescale=1/255,
rotation_range=40,
width_shift_range=0.2,
height_shift_range=0.2,
shear_range=0.2,
zoom_range=0.2,
horizontal_flip=True,
fill_mode="nearest")
validation_datagen = ImageDataGenerator(rescale=1/255)
train_generator = train_datagen.flow_from_directory(
train_dir,
target_size=(300, 300),
batch_size=100,
class_mode='binary')
validation_generator = validation_datagen.flow_from_directory(
validation_dir,
target_size=(300, 300),
batch_size=100,
class_mode='binary')
history = model.fit(
train_generator,
steps_per_epoch=20,
epochs=30,
verbose=1,
validation_data=validation_generator,
validation_steps=10,
callbacks=[callbacks])
import numpy as np
from google.colab import files
from tensorflow.keras.preprocessing import image
uploaded=files.upload()
for fn in uploaded.keys():
path='/content/' + fn
img=image.load_img(path, target_size=(300, 300))
x=image.img_to_array(img)
x=np.expand_dims(x, axis=0)
images = np.vstack([x])
classes = model.predict(images, batch_size=10)
print(classes)
Even though after training the model and obtaining a quite good accuracy on training and validation data, the model is always predicting 1 for any new image. I have tried changing the batch size, epochs, learning rate, etc. But, no luck.
Can anyone explain what's the problem here?

How to give 2 different dataset to 2 different cnn

Hi everyone, i'm the new on keras and i'm in trouble. I've found to how to combine to cnn model but i cant give datasets to models. is the anyone who can help me ?
Here is my code :
# -*- coding: utf-8 -*-
"""
Created on Mon Dec 16 08:20:24 2019
#author: TECHFEA
"""
from keras import applications
from keras.layers import GlobalAveragePooling2D, Dense,Flatten,Conv2D,MaxPooling2D,Add,Input
from keras.layers import Concatenate
from keras.preprocessing.image import ImageDataGenerator
from sklearn.metrics import log_loss
from keras.models import Model
from keras.optimizers import SGD
from sklearn.metrics import roc_curve, auc
from sklearn.metrics import classification_report,confusion_matrix,accuracy_score
import matplotlib.pyplot as plt
from keras.models import load_model
from scipy import interp
from itertools import cycle
from glob import glob
from keras.optimizers import Adam
train_path ="C:/Users/Monster/Desktop/furkan_ecevit/Datasets/fer_orj/train/"
validation_path ="C:/Users/Monster/Desktop/furkan_ecevit/Datasets/fer_orj/validation/"
train_path2="C:/Users/Monster/Desktop/furkan_ecevit/Datasets/fer_lbp/train_lbp/"
validation_path2="C:/Users/Monster/Desktop/furkan_ecevit/Datasets/fer_lbp/validation_lbp/"
className = glob(train_path + "*/")
numberOfClass = len(className)
batch_size=32
train_datagen = ImageDataGenerator(rescale= 1./255,
vertical_flip=False,
horizontal_flip=True)
validation_datagen = ImageDataGenerator(rescale = 1./255)
train_generator = train_datagen.flow_from_directory(train_path, target_size =(72,72),
batch_size = batch_size,
color_mode = "rgb",
class_mode = "categorical")
validation_generator = validation_datagen.flow_from_directory(validation_path, target_size =(72,72),
batch_size = 10,
color_mode = "rgb",
class_mode = "categorical")
train_generator2 = train_datagen.flow_from_directory(train_path2, target_size =(72,72),
batch_size = batch_size,
color_mode = "rgb",
class_mode = "categorical")
validation_generator2 = validation_datagen.flow_from_directory(validation_path2, target_size =(72,72),
batch_size = 10,
color_mode = "rgb",
class_mode = "categorical")
base_model1 = applications.VGG16(weights='imagenet', include_top=False, input_shape=(72,72,3))
base_model1.summary()
x1=base_model1.output
x1=Flatten()(x1)
x1=Dense(100,activation='relu')(x1)
model1 = Model(inputs=base_model1.input, outputs=x1)
model1.summary()
input_shallow = Input(shape = (72,72,3))
conv1 = Conv2D(16, (3,3), activation = 'relu', padding = "same")(input_shallow)
pool1 = MaxPooling2D(pool_size = (2,2), strides = 2)(conv1)
conv2 = Conv2D(32, (3,3), activation = 'relu', padding = "same")(pool1)
pool2 = MaxPooling2D(pool_size = (2,2), strides = 2)(conv2)
flat1=Flatten()(pool2)
dense_1=Dense(100,activation='relu')(flat1)
model2=Model(inputs=input_shallow,outputs=dense_1)
model2.summary()
mergedOut = Add()([model1.output,model2.output])
out=Dense(2048, activation='relu')(mergedOut)
out = Dense(7, activation='softmax', name='predictions')(out)
model = Model(inputs=[model1.input,model2.input], outputs=out)
model.summary()
opt = Adam(lr=0.001, beta_1=0.9, beta_2=0.999)
model.compile(optimizer=opt, loss="categorical_crossentropy", metrics=["accuracy"])
hist = model.fit_generator(
generator=(train_generator,train_generator2),
steps_per_epoch = 10,
epochs=16,
validation_data =(validation_generator,validation_generator2),
validation_steps = 2,
shuffle=True)
Here is the what i want to do with image :
Here is the what i got error :
'DirectoryIterator' object has no attribute 'ndim'