I recently bought a Mac and I just installed miniconda (Miniconda3 macOS Apple M1 64-bit pkg). However, when I try to install bowtie2 (conda install -c bioconda bowtie2), I get this message:
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
bowtie2
Current channels:
https://conda.anaconda.org/bioconda/osx-arm64
https://conda.anaconda.org/bioconda/noarch
https://conda.anaconda.org/conda-forge/osx-arm64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/osx-arm64
https://repo.anaconda.com/pkgs/main/noarch
However, the package looks to be in bioconda:
https://anaconda.org/bioconda/bowtie2
What is the problem there? I can install other packages with no further issues.
I realized that I couldn't install it using Miniconda3 macOS Apple M1 64-bit pkg, but I could install it with the Miniconda3 macOS Intel x86 64-bit pkg...
Related
I've been trying to install QIIME2 on Linux with the command
conda install -c qiime2 qiime2
and get this error message:
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: \
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort. failed
UnsatisfiableError: The following specifications were found
to be incompatible with the existing python installation in your environment:
Specifications:
- qiime2 -> python[version='>=3.6,<3.7.0a0|>=3.8,<3.9.0a0']
Your python: python=3.9
If python is on the left-most side of the chain, that's the version you've asked for.
When python appears to the right, that indicates that the thing on the left is somehow
not available for the python version you are constrained to. Note that conda will not
change your python version to a different minor version unless you explicitly specify
that.
The following specifications were found to be incompatible with your system:
- feature:/linux-64::__glibc==2.31=0
- feature:|#/linux-64::__glibc==2.31=0
Your installed version is: 2.31`
I even tried installing it another way using:
conda env create -n qiime2 --file qiime2.yml
and get another error:
Collecting package metadata (repodata.json): done
Solving environment: failed
ResolvePackageNotFound:
- libgfortran=4.0.0
- appnope=0.1.0
I'm very new to this so any help on how I could maybe solve this would be greatly appreciated.
Thanks!
./conda install -c anaconda appnope
./conda install -c anaconda libgfortran
This is a new anaconda3 installation on centos 7.9 and geopandas is not getting installed due to UnsatisfiableError.
$ conda --version is conda 4.13.0
$conda install geopandas
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: \
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort. failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versionsThe following specifications were found to be incompatible with your system:
- feature:/linux-64::__glibc==2.17=0
- python=3.9 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
Your installed version is: 2.17
Any thoughts how to fix install geopandas?
I have the same issue here, same version of conda (4.13.0).
I re-installed anaconda from the latest available script (2022.05), same issue.
I resolved the problem by installing geopandas using
pip install geopandas
I am working on a .py module, which requires me to use the python_speech_features package. I wrote the following command in the Anaconda Prompt:
conda install -c contango python_speech_features
But I am getting the following error:
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- python_speech_features
My system config:
Python: 3.8.8
Conda: 4.10.1
Since it is pure Python and no one is actively maintaining a Conda build, feel free to install from PyPI:
## activate environment
conda activate foo
## install dependencies
conda install pip numpy scipy
## install with pip
pip install python_speech_features
I have a problem with installing cot-reports module for Anaconda from the following page:
https://github.com/NDelventhal/cot-reports
I am trying the following command for installation from Anaconda terminal:
conda install git+https://github.com/NDelventhal/cot-reports
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
//github.com/ndelventhal/cot-reports
Any idea on how can I install this modeule for Anaconda?
I just released the package on PyPI three days ago, so it was only available through Github up to this week. It's a PyPI-only package, and is not listed among the Conda-Forge packages so far, so as of now it can only be found on PyPI. However, as for Conda-Forge it does not require the maintainer of the code to do the packaging, this can change any time.
Nevertheless, to install a pip package in a Conda environment, you should be able to just call: pip install cot_reports.
Try
pip install cot_reports
or
pip install git+https://github.com/NDelventhal/cot_reports
I am looking for help installing wand as a Conda newbie. I was successful installing and using wand outside of Conda on this machine. I am running ImageMagick-7.0.10-Q16-HDRI system-wide. When I run:
conda install -c conda-forge wand
or
conda install -c conda-forge/label/cf202003 wand
as recommended at conda forge, this is the result:
conda install -c conda-forge/label/cf202003 wand
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: /
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versionsThe following specifications were found to be incompatible with your CUDA driver:
- feature:/win-64::__cuda==10.2=0
Your installed CUDA driver is: 10.2
It turns out that the conda error message is misleading. The wand package at conda-forge is in error. Instead I installed wand through pip:
conda install pip
pip install Wand