I have just installed my Jupyter notebook to run Python . I have an active internet connection and python installed . I am getting an error saying "A connection to the notebook server could not be established. The notebook will continue trying to reconnect. Check your network connection or notebook server configuration."
The error is shown in the figure below
I tried running "conda info" on my terminal. This is what I got.
This is the output of my Jupyter notebook terminal
I tried reading many solutions on internet but it did not work .Can u please help me out?.
I think you may have too many variables affecting your install to be able to determine exactly what is wrong. I would recommend starting with a fresh install of Python use either 3.10.8 or 3.11.0:
https://www.python.org/ftp/python/3.10.8/python-3.10.8-amd64.exe
https://www.python.org/ftp/python/3.11.0/python-3.11.0-amd64.exe
Make sure you check the box for adding python.exe to PATH on the first step of the installer.
Check that the newly installed version is the correct one in your PATH:
c:\>python -V
If the version shown is different than the one you just installed, go look at your environemnt variables and make sure that your PATH is correct: the new install should be earlier in the PATH than other Python installs (or remove the others from PATH completely).
Then create an empty virtual environment from that Python install:
c:\>python -m venv c:\path\to\myenv
https://docs.python.org/3/library/venv.html#creating-virtual-environments
Then activate the fresh virtual environment:
C:\> c:\path\to\myenv\Scripts\activate.bat
Now install JupyterLab
pip install wheel jupyterlab
Finally, run JupyterLab:
jupyter lab
This should open the browser automagically. If you are still having problems, you have narrowed the number of variables because this is a clean basic install with nothing except for JupyterLab and nothing else. However, you may still have some configuration from a previous install. If you were working in that previous install and may have some valuable configuration settings, change the name of these directories to keep a copy of the old one to sort through on your own later: %PROGRAMDATA%\jupyter and %APPDATA%\jupyter. Or, if you have never gotten the previous install working at all, just delete these directories altogether. The next time you start Jupyter, they will be created fresh.
Related
I am working on a remote machine for my internship and ran into the following problem.
I ran conda install -c huggingface -c conda-forge datasets, which ended up taking ages (and for some reason downloaded a lot of useless packages) and seemingly got stuck, so I ctrl-c'ed the process. From there on, running source ./miniconda3/bin/activate would take upwards of 20 minutes. I tried deleting the entire folder ./miniconda3 and re-installing it from the shell file -- that didn't help.
I interact with conda using VSCode with Python and Jupyter Notebook extensions installed. I re-installed these extensions too out of despair, it also didn't fix the issue. I cannot run any cells in Jupyter, because activating the virtual environement times out. Is there something so that conda activation takes 1-2 seconds like it used to?
I'm not sure if this will fix it for you, but you could try making sure that you full uninstall miniconda before you re-install it. It makes changes to bashrc and has some other hidden folders. The vscode extension isn't going to be able to handle a 20 minute start up wait, so you'll need to resolve that issue first.
https://zditect.com/guide/python/uninstall-miniconda.html
Also I'm not sure that you should be calling source on the activation function of miniconda. At least for me, when using miniconda you should end up with conda on your terminal path. Then you just use conda activate to activate the environment you are working with.
I just updated my macOS to Catalina and I can't run python or open a jupyter notebook from terminal anymore. As an example, I get error message "ImportError: No module named pandas" when running my python code, and I get
zsh: command not found: jupyter
when running
jupyter notebook
This issue has brought me to anaconda (I would love someone to explain me why. Does python need anaconda to be ran?). I have tried several suggestions from https://github.com/ContinuumIO/anaconda-issues/issues/10998, e.g. I have tried copying folder "anaconda3" from "Relocated items" folder to "Users//", then
export PATH=''/Users/<username>/anaconda3/bin:$PATH"
but I get either
dquote>
or
zsh: /Users//Applications/anaconda3/bin/conda: bad interpreter: /anaconda3/bin/python: no such file or directory
I then tried to reinstall Anaconda using the graphic installer (from https://www.anaconda.com/distribution/#macos) following advice from someone from the anaconda team (https://www.anaconda.com/how-to-restore-anaconda-after-macos-catalina-update/) (I changed installation location to a folder I created in /Users//) but I still get the same error messages when running python3 or jupyter notebook.
How can successfully run python and jupyter notebook with macOS Catalina?
After installed macOS Catalina, we can switch the terminal from bash to zsh. There are many advantages from using zsh instead of bash, but One of the issues with zsh is some of the frameworks (jupyter notebook,conda) are not supported directly. Once I typed jupyter notebook in terminal to run it. It displayed “zsh: no such file or directory”.
The solver is simple but very difficult to find online.
If jupyter was already installed before the update and stopped working after zsh, you should be able to fix it by:
1.open zshrc in terminal by typing: open .zshrc or $open .zschrc
2. add the following line at the end of the file:
source ~/.bash_profile
It will ask zsh to use all the information from bash like the path of jupyter.
Hope it can help you out!
I'm answering to my own question in case it can help others ;)
I found my answer here: https://medium.com/#singhaniatanay18/mac-os-catalina-update-zsh-instead-of-bash-d688f68f70b8
(see comments as well)
Mac OS BigSur:
Uninstall Anaconda:rm -f Anaconda-Navigator.app
re-install pip3 install jupyterlab
I just updated to Catalina, two days before Big Sur release.. oh well.
Catalina came with changes to security and bash, that will remain for future releases. So Catalina moves your anaconda3 folder to /Users/Shared/Previously Relocated Items/Security/anaconda3 I tried to move it back to home directory, but that didn't work. So I deleted it, and reinstalled Anaconda using the command line installer Not the GUI installer, and it worked for me. You can follow instructions here and use /Users/me/anaconda3 folder as recommended here.
Here are the commands that worked for me,
shasum -a 256 /Users/username/anaconda3 . Although not sure it did anything
bash ~/Downloads/Anaconda3-2020.02-MacOSX-x86_64.sh or whatever the name of the command line installer from Conda in your Download folder, or wherever else you downloaded it.
Use sudo in front of the command if permission was denied, then enter your log in password for your Mac
source /Users/username/anaconda3/bin/activate conda init zsh
sudo conda init zsh then enter your Mac's password.
You should be all set now, and all commands like ipython, conda info, jupyter notebook, pyspark will all work.
The last command will make step3 command persist i.e. initialize conda base environment, such that you can run conda, ipython, jupyter notebook the next time you use terminal.
Install the Jupyter using Homebrew in zsh shell
If you don't Python install 3.3or higher.
Open terminal
Using Homewbrew install jupyter
brew install jupyter
Now, you start a notebook
jupyter notebook
I want to follow along a course about deeplearning. This course has a github repo, where all of the codes are available. We need to use anaconda, create an environment based on the yaml file, and run a jupyter notebook within that environment.
There's even a test notebook to check whether the installation and environment creating process was successful. I have created the environment as the description said, the installation of the packages seemed to be good.
For the first few command, I get the required outputs, but the notebook doesn't seem to start from the correct environment, it gives me
C:\Users\user\Anaconda3\Lib\site-packages\jupyter.py
instead of
C:\Users\paperspace\Anaconda3\envs\ztdl\lib\site-packages\jupyter.py
And it can't find the packages that I have just installed before. For example, when it has to include sklearn it gives me:
No module named 'sklearn.__check_build._check_build'
Installing them from command line with pip/conda solves this.
I have tried to install manually ipykernel, nb_conda, jupyter as other posts say. I ran jupyter notebook after I activated the conda environment from the anaconda prompt. But none of these helped me. As I open the kernel menu, I can see that the proper ztdl anaconda environment is the active one.
I also removed anaconda from the %PATH%, and added it again afterwards with c:\Users\user\Anaconda3\ .
I have no idea what should I do to run the notebook within this given anaconda environment, so I can access the installed packages. Thanks in advance, any help is appreciated.
I updated the packages with conda update --all and was using jupyter to work. Before the update, everything was working, but now jupyter doesn't import any module beside the sys, os, copy and time. Numpy, matplotlib and theano are not being imported. But they are definitely in the conda list... the python version is 2.7.12
When I updated with conda, I remember that there was a message that numpy was being deprecieted due to conflicts. Now in the conda list I have numpy 1.11.1.
I'm new in python, so I don't understand the import error. Before uninstalling everything again, I would like to understand what the problem is to learn and of course to continue using jupyter ;)
I found this post https:// github.com/jupyter/notebook/issues/397 (sorry I can't link it, I'm new here) which seems to be a problem related to mine or similar, but I don't think I understand it so well... so before I break more I wanted to ask here!
Is jupyter badly "connected" to anaconda? How can I check where the packages are being searched? For any comment on this I would be very grateful!!
Here are the cells of jupyter:
cells of jupyter
and the Error I get:
ImportError
Thanks!
That import error is due to change in environment of the jupyter notebook. You might have installed the packages in one environment and you are running the jupyter notebook in another environment.
I have got two environments (envs) in my Anaconda folder. I have Anaconda3 folder to be specific).
(windows key+cmd) -> open the windows command prompt run as administrator.
Activate (name of the environment) -> eg.: activate tensorflow-gpu
Start installing packages using conda install
Note: For each environment you need to install all the packages you want to use, separately using the same process. This solution is for windows users, might work for linux users not sure though.
Additionally to make sure your conda environment is up to date run:
conda update conda
conda update anaconda
For more information: https://pradyumnamajumder.wordpress.com/2017/09/30/solution-to-the-python-packages-import-error-in-jupyter/
I followed the idea as in here and changed the file that launches the root jupyter command (cf. cat /dir_where_installed/anaconda2/bin/jupyter and the jupyter-notebook ( cf. cat /dir_where_installed/anaconda2/bin/jupyter-notebook).
It was set as in the anaconda environment conda info --envs as expected (both files had in the first line something like #! /dir_where_installed/anaconda2/bin/python), but for some reason after the update I did and even after installing again everything(!), jupyter wasn't taking that path, instead it was importing from the 'stock' python (apparently).
Anyway, I changed both lines with #! to take the path as in the output of which python.
Summary:
check path in cat /dir_where_installed/anaconda2/bin/jupyter and cat /dir_where_installed/anaconda2/bin/jupyter-notebook
which python out put should be something like /usr/bin/python
substitute the lines in both files starting with #! with #! /usr/bin/python
I'm not sure if this is a good idea, but it worked for me and now I can import all packages in jupyter. If anyone has any idea if this is a bad idea or a better solution, please let me know!
I encountered the following error message, when I was in python mode.
Error (jedi): Failed to start Jedi EPC server.
*** You may need to run "M-x jedi:install-server". ***
This could solve the problem especially if you haven't run the command yet
since Jedi.el installation or update and if the server complains about
Python module imports.
Then I tried M-x jedi:install-server. Then it complained that
Program named "virtualenv" does not exist
Now from the results I got from google, I added the following line to my emacs.d/init.el file, but still I am getting the same error. Please note that I am using Windows 7
(when (memq window-system '(mac ns))
(exec-path-from-shell-initialize))
Trying to set up jedi in emacs under Windows environment has caused me so much time and trouble already, I just want to complete this once and for all.
Ideally, I am looking for an answer that lists out all the steps I need to setup the virtualenv (on Windows 7) in emacs.
I had the same problem but on Windows 10. I got it working by these steps:
In terminal (cmd/powershell/..):
pip install virtualenv
After that, in emacs:
M-x jedi:install-server
And Emacs could install the server.
FYI, I'm running python3.5, pip version 19.2.3, emacs26.2, W10
I think it is clear that virtualenv is missing. So you need to do
just two things. With this way you don't bother with PATH variable and all
that.
install virtualenv however you feel comfortable, (I use conda package manager for everything python related and have the installation instructions for that, feel free to use pip or whatever)
conda activate yourenv
conda install virtualenv
conda list virtualenv #check if virtualenv is actually installed
Find where the virtualenv is located (as I use conda, I know the files are in bin folder in my installation)
and then show jedi where virtualenv is in emacs C-h v jedi:environment-virtualenv "~/path-to-conda-env/bin/virtualenv"). For more help look in the documentation in Configuration or
comment below.
M-x jedi:install-server in emacs
Test on a .py file.