Develop Reference

How can I edit a line in .tcl file?

I need to run a .tcl file via command line which get invoked with a Python script. However, a single line in that .tcl file needs to change based on input from the user. For example:
info = input("Prompt for the user: ")
Now I need the string contained in info to replace one of the lines in .tcl file.

Rewriting the script is one of the trickier options to pick. It makes things harder to audit and it is tremendously easy to make a mess of. It's not recommended at all unless you take special steps, such as factoring out the bit you set into its own file:
File that you edit, e.g., settings.tcl (simple enough that it is pretty trivial to write and you can rewrite the whole lot each time without making a mess of it)
set value "123"
Use of that file:
set value 0
if {[file readable settings.tcl]} {
source settings.tcl
}
puts "value is $value"
More sophisticated versions of that are possible with safe interpreters and language profiling… but they're only really needed when the settings and the code are in different trust domains.
That said, there are other approaches that are usually easier. If you are invoking the Tcl script by running a subprocess, the easiest ways to pass an arbitrary parameter are to use one of:
A command line argument. These can be read on the Tcl side from the $argv global, which holds a list of all arguments after the script name. (The lindex and lassign commands tend to be useful here, e.g., set value [lindex $argv 0].)
An environment variable. These can be read on the Tcl side from the env global array, e.g., set value $env(MyVarName)
On standard input. A line can be read from that on the Tcl side using set line [gets stdin].
In more complex cases, you'd pass values in their own files, or by writing them into something like an SQLite database, or… well, there's lots of options.
If on the other hand the Tcl interpreter is in the same process, pass the values by setting the variables in it before asking for the script to run. (Tcl has almost no true globals — environment variables are a special exception, and only because the OS forces it upon us — so everything is specific to the interpreter context.)
Specifically, if you've got a Tcl instance object from tkinter (Tk is a subclass of that) then you can do:
import tkinter
interp = tkinter.Tcl()
interp.call("set", "value", 123)
interp.eval("source program.tcl")
# Or interp.call("source", "program.tcl")
That has the advantage of doing all the quoting for you.

Why does python3.7 pass argv elements alongside 'garbage'

I had this script working for me, before I decided I'm gonna rewrite everything and make it portable.
Without delving too much into the details, there's a central Bash script, which calls 5 other Bash scripts in their own respective folders. I have no intention of porting to Windows anytime soon, as of current this is just for Linux.
The execution path of the central Bash script is:
dos.1/1-init.sh dos.1/
dos.2/1-trace-to-file.sh dos.2/ dos.1/
dos.3/1-recognize-categories.sh dos.3/
dos.4/1-ping-in-groups.sh dos.4/ dos.3/
dos.5/init.sh dos.5/ dos.4/
I run with ./init.sh
Before the script was 'portable' I was using explicit file paths inside each respective script. All was well and good. The program itself is a combination of Bash and Python, and writes to files in one directory, so that they can be manipulated in various ways, before being read back into different parts of the program.
I understand that the fastest way to do this would be to write a monolithic Python script, using subprocess calls for the Bash side of things... However, I am doing it this way to ease maintenance, and (before I started making it 'portable') it was lightning fast.
My issue now is this: each time I have to read text into Python (either from SQL or from file) there's always this added garbage. Up until this point, I have been using sed, awk and Python's .rstrip() function to manage this... Which is all well and good, but this one damn function will not play nice... And I feel there must be a better way.
In bash I call it with:
$prog_dir=$1
$data_dir=$2
$prog_dir/2fast-ping.py $data_dir/group0.txt > $prog_dir/group0_averages.txt
$prog_dir/2fast-ping.py $data_dir/group1.txt > $prog_dir/group1_averages.txt
...
Now I know that I could write to file from within Python, but in this instance I have other reasons not to.
The issue, is that when the 2fast-ping.py script is ran, it reads the text file in with commas and a newline char. I have vigorously checked and I can confirm that the group#.txt files 100% do not contain commas. Here's the Python:
import sys
import subprocess
import select
from concurrent.futures import ThreadPoolExecutor
filename = sys.argv[1]
f = open(filename, "r")
ips = [elem.rstrip('\n') for elem in f]
print(ips)
f.close()
The script goes on to do some work on the IPs afterwards, but this is the painful part. If I call the script direct from CLI: ./2fast-ping.py ../dos.3/group0.txt, the text is processed PROPERLY and the superseding instructions actually function. But, when called from the first init script, the program basically sh*ts itself because each line is read in with commas. It works until the point where it starts to use the processed info, then:
<actual IP would be here>
ping: ('##.###.###.###',): Name or service not known
Of course, the issue is the ('',) But, Python is adding that in, and I don't know how to stop it :(
Any ideas?

Python code was okay, just passing an additional / with the argument :(

Python variable value from separate file?

I have a Python script that runs 24hrs a day.
A module from this script is using variables values that I wish to change from time to time, without having to stop the script, edit the module file, then launch the script again (I need to avoid interruptions as much as I can).
I thought about storing the variables in a separate file, and the module would, when needed, fetch the new values from the file and use them.
Pickle seemed a solution but is not human readable and therefore not easily changeable. Maybe a JSON file, or another .py file I import over again ?
Another advantage of doing so, for me, is that in case of interruption (eg. server restart), I can resume the script with the latest variable values if I load them from a separate file.
Is there a recommended way of doing such things ?
Something along the lines :
# variables file:
variable1 = 10
variable2 = 25
# main file:
while True:
import variables
print('Sum:', str(variable1+variable2))
time.sleep(60)

An easy way to maintain a text file with variables would be the YAML format. This answer explains how to use it, basically:
import yaml
stream = open("vars.yaml", "r")
docs = yaml.load_all(stream)
If you have more than a few variables, it may be good to check the file descriptor to see if the file was recently updated, and only re-load variables when there was a change in the file.
import os
last_updated = os.path.getmtime('vars.yaml')
Finally, since you want avoid interruption of the script, it may be good to have the script catch any errors in the YAML file and warn the user, instead of just throwing an exception and die. But also remember that "errors should never pass silently". What is the best approach here would depend on your use-case.

Methods to avoid hard-coding file paths in Python

Working with scientific data, specifically climate data, I am constantly hard-coding paths to data directories in my Python code. Even if I were to write the most extensible code in the world, the hard-coded file paths prevent it from ever being truly portable. I also feel like having information about the file system of your machine coded in your programs could be security issue.
What solutions are out there for handling the configuration of paths in Python to avoid having to code them out explicitly?

One of the solution rely on using configuration files.
You can store all your path in a json file like so :
{
"base_path" : "/home/bob/base_folder",
"low_temp_area_path" : "/home/bob/base/folder/low_temp"
}
and then in your python code, you could just do :
import json
with open("conf.json") as json_conf :
CONF = json.load(json_conf)
and then you can use your path (or any configuration variable you like) like so :
print "The base path is {}".format(CONF["base_path"])

First off its always good practise to add a main function to go with each class to test that class or functions in the file. Along with this you determine the current working directory. This becomes incredibly important when running python from a cron job or from a directory that is not the current working directory. No JSON files or environment variables are then needed and you will obtain interoperation across Mac, RHEL and Debian distributions.
This is how you do it, and it will work on windows also if you use '\' instead of '/' (if that is even necessary, in your case).
if "__main__" == __name__:
workingDirectory = os.path.realpath(sys.argv[0])
As you can see when you run your command, the working directory is calculated if you provide a full path or relative path, meaning it will work in a cron job automatically.
After that if you want to work with data that is stored in the current directory use:
fileName = os.path.join( workingDirectory, './sub-folder-of-current-directory/filename.csv' )
fp = open( fileName,'r')
or in the case of the above working directory (parallel to your project directory):
fileName = os.path.join( workingDirectory, '../folder-at-same-level-as-my-project/filename.csv' )
fp = open( fileName,'r')

I believe there are many ways around this, but here is what I would do:
Create a JSON config file with all the paths I need defined.
For even more portability, I'd have a default path where I look for this config file but also have a command line input to change it.

In my opinion passing arguments from command line would be best solution. You should take a look at argparse . This allows you to create nice way to handle arguments from the command line. for example:
myDataScript.py /home/userName/datasource1/

Can't I run file in temporary folder using subprocess?

I was trying to using this code below...
**subprocess.Popen('%USERPROFILE%\\AppData\\Local\\Temp\\AdobeARM - Copy.log').communicate()**
but I got an error message.
Is there anyone can help this?

Since there's an environment variable in the path you can add shell=True to force running a batch process which will evaluate env. vars:
subprocess.Popen('"%USERPROFILE%\\AppData\\Local\\Temp\\AdobeARM - Copy.log"',shell=True).communicate()
Note the protection with quotes since there are spaces. You can also drop the quotes if you pass a list containing one element to Popen, which is cleaner:
subprocess.Popen(['%USERPROFILE%\\AppData\\Local\\Temp\\AdobeARM - Copy.log'],shell=True).communicate()
alternately if you just want to activate the default editor for your logfile, there's a simpler way (which does not block the executing script, so it's slightly different):
p = os.path.join(os.getenv('USERPROFILE'),r"AppData\Local\Temp\AdobeARM - Copy.log")
os.startfile(p)
Maybe it can be even simpler since that may be the temporary directory you're trying to reach:
p = os.path.join(os.getenv('TEMP'),r"AdobeARM - Copy.log")
os.startfile(p)